BLASTX nr result
ID: Coptis24_contig00000935
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00000935
(1002 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003537716.1| PREDICTED: WD-40 repeat-containing protein M... 151 4e-71
ref|NP_001241978.1| uncharacterized protein LOC100791834 [Glycin... 150 2e-70
ref|XP_002306184.1| nucleosome/chromatin assembly factor group [... 161 1e-62
ref|XP_002534420.1| retinoblastoma-binding protein, putative [Ri... 158 1e-62
ref|XP_002278931.1| PREDICTED: WD-40 repeat-containing protein M... 155 2e-61
>ref|XP_003537716.1| PREDICTED: WD-40 repeat-containing protein MSI3-like [Glycine max]
Length = 403
Score = 151 bits (381), Expect(3) = 4e-71
Identities = 79/155 (50%), Positives = 104/155 (67%), Gaps = 8/155 (5%)
Frame = +3
Query: 294 AQVIHLDDDDDTSLPRVQITHQIPLDDSDGELNRARYMPQNPHLIAAKTTASDVCVFDSS 473
+Q I D + LP+V+I+ +IP+D GE+NRAR M QNP ++AAKT S+V VFD +
Sbjct: 88 SQPIVASDPNYPVLPKVEISQRIPVD---GEVNRARCMLQNPSIVAAKTCNSEVYVFDFT 144
Query: 474 SQ-----NQCYRLKGHSQEGYGLSWSPHKQGYLLSGSNDSNICLWDI---STTPLTLHPM 629
+ N RL+GH +EGYGLSWSP K GYLLSGS+D +CLWD+ ++ L
Sbjct: 145 KEHGSECNPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPAAASQDKVLDAF 204
Query: 630 STYQFHEDVVEDVSWHSKSENLFGSVGDDNRLAIW 734
Y+ HE+VVEDVSW+ K EN+FGS GDD +L IW
Sbjct: 205 HVYEGHENVVEDVSWNLKDENMFGSGGDDCKLIIW 239
Score = 103 bits (258), Expect(3) = 4e-71
Identities = 48/66 (72%), Positives = 53/66 (80%)
Frame = +1
Query: 805 LRSNVPQSSVIAHEKEVNYLSFNPFNEWILATASSDTTVNLFDLRKLTAALHSFSGHTDE 984
LR+N PQ S+ HEKEVN+LSFNP+NEWILATASSDT V LFD RKL LH + HTDE
Sbjct: 241 LRTNKPQQSIKPHEKEVNFLSFNPYNEWILATASSDTIVGLFDTRKLAVPLHVLTSHTDE 300
Query: 985 VFQVEW 1002
VFQVEW
Sbjct: 301 VFQVEW 306
Score = 61.6 bits (148), Expect(3) = 4e-71
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +1
Query: 73 YKVWKKNTPFLYDLVISHALEWPSLTVQWLPSS 171
+ VWKKNTP LYD ISH L+WPSLTV WLPSS
Sbjct: 16 FSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSS 48
>ref|NP_001241978.1| uncharacterized protein LOC100791834 [Glycine max]
gi|255636643|gb|ACU18659.1| unknown [Glycine max]
Length = 401
Score = 150 bits (380), Expect(3) = 2e-70
Identities = 78/154 (50%), Positives = 106/154 (68%), Gaps = 7/154 (4%)
Frame = +3
Query: 294 AQVIHLDDDDDTSLPRVQITHQIPLDDSDGELNRARYMPQNPHLIAAKTTASDVCVFDSS 473
+Q I D ++ LP+V+I+ +I +D GE+NRAR MPQNP ++ AKT S+V VFD +
Sbjct: 87 SQHIVATDPNNPVLPKVEISQRISVD---GEVNRARCMPQNPSIVGAKTCNSEVYVFDFT 143
Query: 474 SQ--NQC---YRLKGHSQEGYGLSWSPHKQGYLLSGSNDSNICLWDI--STTPLTLHPMS 632
+ + C RL+GH +EGYGLSWSP K GYLLSGS+D +CLWD+ ++ L +
Sbjct: 144 KERGSACDPDLRLRGHDKEGYGLSWSPFKNGYLLSGSHDHKVCLWDVPGASQEKVLDALH 203
Query: 633 TYQFHEDVVEDVSWHSKSENLFGSVGDDNRLAIW 734
Y+ HE+VVEDVSW+ K EN+FGS GDD +L IW
Sbjct: 204 IYEGHENVVEDVSWNLKDENMFGSSGDDCKLIIW 237
Score = 102 bits (254), Expect(3) = 2e-70
Identities = 49/66 (74%), Positives = 52/66 (78%)
Frame = +1
Query: 805 LRSNVPQSSVIAHEKEVNYLSFNPFNEWILATASSDTTVNLFDLRKLTAALHSFSGHTDE 984
LR+N Q SV HEKEVN+LSFNP+NEWILATASSDT V LFD RKL LH S HTDE
Sbjct: 239 LRTNKAQQSVKPHEKEVNFLSFNPYNEWILATASSDTDVGLFDTRKLAVPLHILSSHTDE 298
Query: 985 VFQVEW 1002
VFQVEW
Sbjct: 299 VFQVEW 304
Score = 61.6 bits (148), Expect(3) = 2e-70
Identities = 25/33 (75%), Positives = 27/33 (81%)
Frame = +1
Query: 73 YKVWKKNTPFLYDLVISHALEWPSLTVQWLPSS 171
+ VWKKNTP LYD ISH L+WPSLTV WLPSS
Sbjct: 15 FSVWKKNTPLLYDFFISHPLQWPSLTVHWLPSS 47
>ref|XP_002306184.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]
gi|222849148|gb|EEE86695.1| nucleosome/chromatin
assembly factor group [Populus trichocarpa]
Length = 417
Score = 161 bits (408), Expect(2) = 1e-62
Identities = 83/148 (56%), Positives = 104/148 (70%), Gaps = 11/148 (7%)
Frame = +3
Query: 324 DTSLPRVQITHQIPLDDSDGELNRARYMPQNPHLIAAKTTASDVCVFDSSSQNQ------ 485
D+ +P+V+IT +I +D GE+NRAR MPQNP ++ AKT+ +V VFDS+ Q +
Sbjct: 106 DSVIPKVEITQKIRVD---GEVNRARCMPQNPAIVGAKTSGCEVYVFDSTKQAERKQRDG 162
Query: 486 C---YRLKGHSQEGYGLSWSPHKQGYLLSGSNDSNICLWDIS--TTPLTLHPMSTYQFHE 650
C RL GH +EGYGLSWSP KQGYL+SGS+D+ ICLWD+S L + Y+ HE
Sbjct: 163 CDPDLRLTGHDKEGYGLSWSPFKQGYLVSGSHDNRICLWDVSGNAQDKVLGALQVYEAHE 222
Query: 651 DVVEDVSWHSKSENLFGSVGDDNRLAIW 734
VVEDVSWH K+ENLFGSVGDD RL IW
Sbjct: 223 SVVEDVSWHLKNENLFGSVGDDCRLVIW 250
Score = 105 bits (263), Expect(2) = 1e-62
Identities = 48/66 (72%), Positives = 56/66 (84%)
Frame = +1
Query: 805 LRSNVPQSSVIAHEKEVNYLSFNPFNEWILATASSDTTVNLFDLRKLTAALHSFSGHTDE 984
+R+N Q SV AH+KE+NYLSFNP+NEWILATASSD TV LFD+RKLT LH+ S HT+E
Sbjct: 252 MRTNQTQHSVKAHKKEINYLSFNPYNEWILATASSDATVGLFDMRKLTVPLHALSSHTEE 311
Query: 985 VFQVEW 1002
VFQVEW
Sbjct: 312 VFQVEW 317
Score = 63.5 bits (153), Expect = 7e-08
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1
Query: 73 YKVWKKNTPFLYDLVISHALEWPSLTVQWLP 165
+ VWKKNTP LYDLVISH LEWPSLTVQW+P
Sbjct: 19 FSVWKKNTPVLYDLVISHPLEWPSLTVQWVP 49
>ref|XP_002534420.1| retinoblastoma-binding protein, putative [Ricinus communis]
gi|223525325|gb|EEF27964.1| retinoblastoma-binding
protein, putative [Ricinus communis]
Length = 415
Score = 158 bits (400), Expect(2) = 1e-62
Identities = 80/149 (53%), Positives = 104/149 (69%), Gaps = 11/149 (7%)
Frame = +3
Query: 321 DDTSLPRVQITHQIPLDDSDGELNRARYMPQNPHLIAAKTTASDVCVFDSSSQNQCYR-- 494
+D+ +P+V+I+ +I +D GE+NRAR MPQNP IAAKT+ DV VFDS+ Q++ +
Sbjct: 106 EDSLIPKVEISQKIRVD---GEVNRARCMPQNPAFIAAKTSGCDVYVFDSTKQSERQQDD 162
Query: 495 -------LKGHSQEGYGLSWSPHKQGYLLSGSNDSNICLWDISTT--PLTLHPMSTYQFH 647
L+GH +EGYGLSWSP K GYL+SGS+D+ ICLWD+S L M Y+ H
Sbjct: 163 GCDPDLTLRGHDKEGYGLSWSPFKPGYLVSGSHDNKICLWDVSAVAKDKVLDSMHVYEAH 222
Query: 648 EDVVEDVSWHSKSENLFGSVGDDNRLAIW 734
+ VVEDVSWH K+EN+FGSVGDD L IW
Sbjct: 223 DSVVEDVSWHLKNENIFGSVGDDCMLMIW 251
Score = 108 bits (270), Expect(2) = 1e-62
Identities = 51/66 (77%), Positives = 56/66 (84%)
Frame = +1
Query: 805 LRSNVPQSSVIAHEKEVNYLSFNPFNEWILATASSDTTVNLFDLRKLTAALHSFSGHTDE 984
LR+N Q S+ AHEKEVNYLSFNP+NEWILATASSD TV LFD+RKL A LH SGHT+E
Sbjct: 253 LRTNQTQHSIKAHEKEVNYLSFNPYNEWILATASSDATVGLFDMRKLIAPLHVLSGHTEE 312
Query: 985 VFQVEW 1002
VFQVEW
Sbjct: 313 VFQVEW 318
Score = 65.5 bits (158), Expect = 2e-08
Identities = 27/31 (87%), Positives = 28/31 (90%)
Frame = +1
Query: 73 YKVWKKNTPFLYDLVISHALEWPSLTVQWLP 165
+ VWKKNTPFLYDLVISH LEWPSLTV WLP
Sbjct: 22 FSVWKKNTPFLYDLVISHPLEWPSLTVHWLP 52
>ref|XP_002278931.1| PREDICTED: WD-40 repeat-containing protein MSI2 [Vitis vinifera]
gi|297744608|emb|CBI37870.3| unnamed protein product
[Vitis vinifera]
Length = 401
Score = 155 bits (393), Expect(2) = 2e-61
Identities = 80/150 (53%), Positives = 103/150 (68%), Gaps = 11/150 (7%)
Frame = +3
Query: 318 DDDTSLPRVQITHQIPLDDSDGELNRARYMPQNPHLIAAKTTASDVCVF---------DS 470
+ + ++P+V+IT +I +D GE+NRAR MPQNP ++AAKT+ +V VF +
Sbjct: 91 EQNPTIPKVEITKKIHVD---GEVNRARCMPQNPDMVAAKTSGLEVYVFNCQKPPVGGEG 147
Query: 471 SSQNQCYRLKGHSQEGYGLSWSPHKQGYLLSGSNDSNICLWDISTT--PLTLHPMSTYQF 644
S N RL+GH +EGYGLSWS K GY+LSGSND +CLWD+S + L M Y+
Sbjct: 148 RSCNPDLRLRGHEKEGYGLSWSSFKGGYVLSGSNDCKVCLWDVSASAEDKVLGAMHVYEA 207
Query: 645 HEDVVEDVSWHSKSENLFGSVGDDNRLAIW 734
HE+VVEDVSWH K+ENLFGSVGDD RL IW
Sbjct: 208 HENVVEDVSWHLKNENLFGSVGDDCRLMIW 237
Score = 107 bits (267), Expect(2) = 2e-61
Identities = 50/66 (75%), Positives = 56/66 (84%)
Frame = +1
Query: 805 LRSNVPQSSVIAHEKEVNYLSFNPFNEWILATASSDTTVNLFDLRKLTAALHSFSGHTDE 984
LR + PQ SVI HEKEVN+LSFNP+NEWILATASSDTTV LFD+RKL + LH S HT+E
Sbjct: 239 LRLDKPQHSVIVHEKEVNFLSFNPYNEWILATASSDTTVGLFDMRKLNSPLHVLSSHTEE 298
Query: 985 VFQVEW 1002
VFQVEW
Sbjct: 299 VFQVEW 304
Score = 64.3 bits (155), Expect = 4e-08
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 73 YKVWKKNTPFLYDLVISHALEWPSLTVQWLPS 168
+ VWKKNTPFLYDL+ISH LEWPSLTVQ+LPS
Sbjct: 15 FTVWKKNTPFLYDLIISHPLEWPSLTVQFLPS 46