BLASTX nr result
ID: Coptis24_contig00000934
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00000934
(1241 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containi... 476 e-132
emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera] 475 e-131
ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containi... 452 e-125
ref|XP_003546143.1| PREDICTED: pentatricopeptide repeat-containi... 418 e-114
ref|NP_564786.1| pentatricopeptide repeat-containing protein [Ar... 417 e-114
>ref|XP_003634851.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Vitis vinifera]
Length = 396
Score = 476 bits (1226), Expect = e-132
Identities = 240/392 (61%), Positives = 309/392 (78%), Gaps = 3/392 (0%)
Frame = +1
Query: 43 RLKPISTHRN--FSSILNPDSXXXXXXXXXXXXXXXXXXXEKNPEKILDICRAASLTPEN 216
RL+PIS+HR FSSIL+PDS E++P++IL+ICRAA+LTPE+
Sbjct: 6 RLRPISSHRCRFFSSILSPDSATPLSSKEKSRAALSLLKSEQDPQRILEICRAAALTPES 65
Query: 217 HLDRVAFSLAISNLKETQSFELIRTFLEELKTRPDLKNDRFYSHSIVLYGQAGMIDHAKR 396
HLDRVAFS+AIS L +++ F+ IR FL+ELK RPDL+ +RF SH+IVL+GQAGM++ A R
Sbjct: 66 HLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLRTERFVSHAIVLFGQAGMLNDAVR 125
Query: 397 TFKTMGEAGISRTVKSLNALLFACLIGKKYDEVKSIFVEFPKRYGIQCNLDTFNTVIKAF 576
TF+ M + G+ RTV+SLNALLF+C++ K Y E IF+EFPK YGI+ NLD++NTV+KAF
Sbjct: 126 TFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELNLDSYNTVLKAF 185
Query: 577 SESGNTSSVYSILAEMDRKRIEPNATTFSTMLAGFYKEEKDKDVGNVLVLMKQHGVKLGL 756
SESG++SS YSILAEM RK ++PNAT+F +LAGFY EEK +DVG VL +M+++ ++ G+
Sbjct: 186 SESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGI 245
Query: 757 STYNIRIQSLCKLNKSGEAKALLFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYV 936
STYNIRIQSLCKL KS EAKALL + +LAR MKPN+ TY HLI GF KEGN++E +L+
Sbjct: 246 STYNIRIQSLCKLKKSSEAKALL-DGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFK 304
Query: 937 DMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKVSMLKQWFPNFATMKMLVDGLVSIS 1116
DM +G +PD+ CY+TLVY+LCQGGDFE+ALR CK M K WFPN +TM LV+GLVSIS
Sbjct: 305 DMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTMTSLVNGLVSIS 364
Query: 1117 KVEEARELVGKMKERFTK-VDMWKEIEEGLPQ 1209
KVEEAREL+G++KE+F++ VD W EIE GLPQ
Sbjct: 365 KVEEARELIGQIKEKFSRNVDKWNEIEAGLPQ 396
>emb|CAN77919.1| hypothetical protein VITISV_027645 [Vitis vinifera]
Length = 396
Score = 475 bits (1222), Expect = e-131
Identities = 239/392 (60%), Positives = 309/392 (78%), Gaps = 3/392 (0%)
Frame = +1
Query: 43 RLKPISTHRN--FSSILNPDSXXXXXXXXXXXXXXXXXXXEKNPEKILDICRAASLTPEN 216
RL+PIS+HR FSSIL+PDS E++P++IL+ICRAA+LTPE+
Sbjct: 6 RLRPISSHRCRFFSSILSPDSATPLSSKEKSRAALSLLKSEQDPQRILEICRAAALTPES 65
Query: 217 HLDRVAFSLAISNLKETQSFELIRTFLEELKTRPDLKNDRFYSHSIVLYGQAGMIDHAKR 396
HLDRVAFS+AIS L +++ F+ IR FL+ELK RPDL+ +RF SH+IVL+GQAGM++ A R
Sbjct: 66 HLDRVAFSVAISKLADSKHFDSIRHFLDELKARPDLRTERFVSHAIVLFGQAGMLNDAVR 125
Query: 397 TFKTMGEAGISRTVKSLNALLFACLIGKKYDEVKSIFVEFPKRYGIQCNLDTFNTVIKAF 576
TF+ M + G+ RTV+SLNALLF+C++ K Y E IF+EFPK YGI+ NLD++NTV+KAF
Sbjct: 126 TFEQMHQLGVDRTVRSLNALLFSCILAKNYKEANRIFLEFPKTYGIELNLDSYNTVLKAF 185
Query: 577 SESGNTSSVYSILAEMDRKRIEPNATTFSTMLAGFYKEEKDKDVGNVLVLMKQHGVKLGL 756
SESG++SS YSILAEM RK ++PNAT+F +LAGFY EEK +DVG VL +M+++ ++ G+
Sbjct: 186 SESGSSSSGYSILAEMGRKGVKPNATSFGILLAGFYNEEKYEDVGKVLKMMEEYKMQPGI 245
Query: 757 STYNIRIQSLCKLNKSGEAKALLFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYV 936
STYNIRIQSLCKL KS EAKALL + +LAR MKPN+ TY HLI GF KEGN++E +L+
Sbjct: 246 STYNIRIQSLCKLKKSSEAKALL-DGILARRMKPNSETYCHLIHGFCKEGNLDEAKKLFK 304
Query: 937 DMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKVSMLKQWFPNFATMKMLVDGLVSIS 1116
DM +G +PD+ CY+TLVY+LCQGGDFE+ALR CK M K WFPN +TM LV+GLVSIS
Sbjct: 305 DMVNRGCKPDSDCYFTLVYFLCQGGDFESALRFCKECMEKGWFPNISTMTSLVNGLVSIS 364
Query: 1117 KVEEARELVGKMKERFTK-VDMWKEIEEGLPQ 1209
KVEEA+EL+G++KE+F++ VD W EIE GLPQ
Sbjct: 365 KVEEAQELIGQIKEKFSRNVDKWNEIEAGLPQ 396
>ref|XP_004145104.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
gi|449471723|ref|XP_004153390.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
gi|449530564|ref|XP_004172264.1| PREDICTED:
pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Cucumis sativus]
Length = 405
Score = 452 bits (1164), Expect = e-125
Identities = 228/383 (59%), Positives = 294/383 (76%), Gaps = 1/383 (0%)
Frame = +1
Query: 64 HRNFSSILNPDSXXXXXXXXXXXXXXXXXXXEKNPEKILDICRAASLTPENHLDRVAFSL 243
+R+ S+IL+PDS E+NPE+I+DICRAASLTPE HLDR+AFS+
Sbjct: 24 YRSLSTILSPDSSNPLSAKQKSRAALSLLKTEENPERIIDICRAASLTPEFHLDRIAFSV 83
Query: 244 AISNLKETQSFELIRTFLEELKTRPDLKNDRFYSHSIVLYGQAGMIDHAKRTFKTMGEAG 423
AIS L + + F+ IR FLEELK+RPDLKN+RF H+IVLYGQA M+DHA RTFK + E G
Sbjct: 84 AISKLSKFKHFDGIRRFLEELKSRPDLKNERFACHAIVLYGQANMLDHAIRTFKQIDELG 143
Query: 424 ISRTVKSLNALLFACLIGKKYDEVKSIFVEFPKRYGIQCNLDTFNTVIKAFSESGNTSSV 603
+ +VK+LNALLFAC + K Y E+K +++EFPK YGI+ ++DT+N VIKAFSESG++SSV
Sbjct: 144 VRHSVKTLNALLFACNLAKDYKELKRVYMEFPKIYGIEPDIDTYNRVIKAFSESGSSSSV 203
Query: 604 YSILAEMDRKRIEPNATTFSTMLAGFYKEEKDKDVGNVLVLMKQHGVKLGLSTYNIRIQS 783
SI+AEMDRK ++PNATTF+ LAG Y EEK +DV VL LM+++GV+ G++TYN RI+S
Sbjct: 204 SSIVAEMDRKDVKPNATTFANWLAGCYMEEKFEDVEKVLNLMEKYGVRRGVATYNARIRS 263
Query: 784 LCKLNKSGEAKALLFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEIWRLYVDMRKKGIEP 963
LCKL +S EAKA LF+ ML+RGM PN+VTY LI GF KEGN++E ++ M G +P
Sbjct: 264 LCKLKRSTEAKA-LFDGMLSRGMDPNSVTYCELIHGFCKEGNLDEAKSIFKRMINSGCQP 322
Query: 964 DASCYYTLVYYLCQGGDFENALRACKVSMLKQWFPNFATMKMLVDGLVSISKVEEARELV 1143
D+ CY+TL Y+LC+GGD+E A + C SM K W PNF+TMK LVDGLVSISKVEEA++L+
Sbjct: 323 DSECYFTLTYFLCRGGDYETAFKICLESMKKGWVPNFSTMKSLVDGLVSISKVEEAKQLI 382
Query: 1144 GKMKERFTK-VDMWKEIEEGLPQ 1209
G++KERF+K V+ W EIE GLPQ
Sbjct: 383 GQIKERFSKNVEKWSEIEAGLPQ 405
>ref|XP_003546143.1| PREDICTED: pentatricopeptide repeat-containing protein At1g61870,
mitochondrial-like [Glycine max]
Length = 388
Score = 418 bits (1074), Expect = e-114
Identities = 220/397 (55%), Positives = 283/397 (71%), Gaps = 1/397 (0%)
Frame = +1
Query: 22 MFLFSRLRLKPISTHRNFSSILNPDSXXXXXXXXXXXXXXXXXXXEKNPEKILDICRAAS 201
M +FSRLR H + +SIL+P+S E NPE+ILDICRAA+
Sbjct: 1 MSIFSRLR------HYSTTSILSPNSSTPLTSKQKTRSAIHLLKSETNPERILDICRAAA 54
Query: 202 LTPENHLDRVAFSLAISNLKETQSFELIRTFLEELKTRPDLKNDRFYSHSIVLYGQAGMI 381
LTP++H+DR AFSLA+S L F IRTFL++LKTRPDL+N++F SH+IVLYGQA M+
Sbjct: 55 LTPDSHIDRRAFSLAVSKLAAAHHFAGIRTFLDDLKTRPDLRNEKFLSHAIVLYGQANML 114
Query: 382 DHAKRTFKTMGEAGISRTVKSLNALLFACLIGKKYDEVKSIFVEFPKRYGIQCNLDTFNT 561
DHA RTF + R+VK+LN+LLFA L+ K Y E+ I++EFPK Y IQ NLDT+NT
Sbjct: 115 DHAIRTFTE--DLPSPRSVKTLNSLLFAALLAKNYKELTRIYLEFPKTYSIQPNLDTYNT 172
Query: 562 VIKAFSESGNTSSVYSILAEMDRKRIEPNATTFSTMLAGFYKEEKDKDVGNVLVLMKQHG 741
VIKAF+ESG+TSSVYS+LAEMD+ I PN TT + L+GFY+E+K DVG VL LM+++
Sbjct: 173 VIKAFAESGSTSSVYSVLAEMDKNNIAPNVTTLNNSLSGFYREKKFDDVGKVLKLMEKYS 232
Query: 742 VKLGLSTYNIRIQSLCKLNKSGEAKALLFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEI 921
V +STYN+RIQSLCKL +S EAKALL E M+ G KPN+V+Y LI GF KEG++EE
Sbjct: 233 VFPSISTYNVRIQSLCKLKRSSEAKALL-EGMVCNGRKPNSVSYACLIHGFCKEGDLEEA 291
Query: 922 WRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKVSMLKQWFPNFATMKMLVDG 1101
RL+ DM+++G PD CY+TLV++LC GG+FE AL K M K W PNF TMK LV+G
Sbjct: 292 KRLFRDMKRRGYLPDGECYFTLVHFLCCGGEFEAALEVAKECMGKGWVPNFTTMKSLVNG 351
Query: 1102 LVSISKVEEARELVGKMKERFTKV-DMWKEIEEGLPQ 1209
L KV+EA+E++ ++KE+F + D W EIE GLPQ
Sbjct: 352 LAGALKVDEAKEVIKQIKEKFAESGDKWDEIEAGLPQ 388
>ref|NP_564786.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806489|sp|Q8LE47.2|PPR87_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g61870, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 336; Flags: Precursor
gi|16226403|gb|AAL16159.1|AF428391_1 At1g61870/F8K4_8
[Arabidopsis thaliana] gi|3367521|gb|AAC28506.1| Similar
to gb|U08285 membrane-associated salt-inducible protein
from Nicotiana tabacum. ESTs gb|T44131 and gb|T04378 come
from this gene [Arabidopsis thaliana]
gi|17065564|gb|AAL32936.1| Unknown protein [Arabidopsis
thaliana] gi|32815835|gb|AAP88326.1| At1g61870
[Arabidopsis thaliana] gi|332195777|gb|AEE33898.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 408
Score = 417 bits (1072), Expect = e-114
Identities = 211/397 (53%), Positives = 283/397 (71%), Gaps = 3/397 (0%)
Frame = +1
Query: 28 LFSRLRLKP-ISTHRNFSSILNPDSXXXXXXXXXXXXXXXXXXXEKNPEKILDICRAASL 204
LF L P I + + S+IL+PDS EK+P++IL+ICRAASL
Sbjct: 13 LFRHLNASPQIRSLSSASTILSPDSKTPLTSKEKSKAALSLLKSEKDPDRILEICRAASL 72
Query: 205 TPENHLDRVAFSLAISNLKETQSFELIRTFLEE-LKTRPDLKNDRFYSHSIVLYGQAGMI 381
TP+ +DR+AFS A+ NL E + F + L+ ++ RPDLK++RF +H+IVLY QA M+
Sbjct: 73 TPDCRIDRIAFSAAVENLAEKKHFSAVSNLLDGFIENRPDLKSERFAAHAIVLYAQANML 132
Query: 382 DHAKRTFKTMGEAGISRTVKSLNALLFACLIGKKYDEVKSIFVEFPKRYGIQCNLDTFNT 561
DH+ R F+ + + ISRTVKSLNALLFACL+ K Y E K +++E PK YGI+ +L+T+N
Sbjct: 133 DHSLRVFRDLEKFEISRTVKSLNALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNR 192
Query: 562 VIKAFSESGNTSSVYSILAEMDRKRIEPNATTFSTMLAGFYKEEKDKDVGNVLVLMKQHG 741
+IK F ESG+ SS YSI+AEM+RK I+PN+++F M++GFY E+K +VG VL +MK G
Sbjct: 193 MIKVFCESGSASSSYSIVAEMERKGIKPNSSSFGLMISGFYAEDKSDEVGKVLAMMKDRG 252
Query: 742 VKLGLSTYNIRIQSLCKLNKSGEAKALLFEEMLARGMKPNAVTYFHLIFGFGKEGNVEEI 921
V +G+STYNIRIQSLCK KS EAKALL + ML+ GMKPN VTY HLI GF E + EE
Sbjct: 253 VNIGVSTYNIRIQSLCKRKKSKEAKALL-DGMLSAGMKPNTVTYSHLIHGFCNEDDFEEA 311
Query: 922 WRLYVDMRKKGIEPDASCYYTLVYYLCQGGDFENALRACKVSMLKQWFPNFATMKMLVDG 1101
+L+ M +G +PD+ CY+TL+YYLC+GGDFE AL CK SM K W P+F+ MK LV+G
Sbjct: 312 KKLFKIMVNRGCKPDSECYFTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNG 371
Query: 1102 LVSISKVEEARELVGKMKERFTK-VDMWKEIEEGLPQ 1209
L SKVEEA+EL+G++KE+FT+ V++W E+E LPQ
Sbjct: 372 LAKDSKVEEAKELIGQVKEKFTRNVELWNEVEAALPQ 408