BLASTX nr result

ID: Coptis24_contig00000910 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000910
         (914 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABK94463.1| unknown [Populus trichocarpa]                          246   7e-63
ref|XP_003613865.1| Endoplasmic reticulum membrane protein, puta...   243   3e-62
emb|CAN69808.1| hypothetical protein VITISV_019656 [Vitis vinifera]   243   3e-62
ref|XP_002316127.1| predicted protein [Populus trichocarpa] gi|2...   243   6e-62
ref|XP_002284835.1| PREDICTED: uncharacterized endoplasmic retic...   242   8e-62

>gb|ABK94463.1| unknown [Populus trichocarpa]
          Length = 203

 Score =  246 bits (627), Expect = 7e-63
 Identities = 119/203 (58%), Positives = 143/203 (70%), Gaps = 4/203 (1%)
 Frame = -2

Query: 745 MAKSESFDFEKQFAYYGAYHRNPINYFIHMLFVWPILFSFLVLLSFTPSFLKLPHIEFSP 566
           M K   FD EK +A+YGAYH NPIN  IHM+FVWPI F+  ++L FTP    LP +E S 
Sbjct: 1   MGKYGLFDLEKHYAFYGAYHSNPINILIHMIFVWPIFFASSLILYFTPPLFNLPQVELSL 60

Query: 565 FGN----LVLNFGLFPTLSYALFYISIDNRAGSLAAVFCVLSWVGGSLLAGRLGYSLAWK 398
           FG+    L LN G F  L YALFYI +D +AGSLAA+FC   WV    +A  LG+SLAWK
Sbjct: 61  FGSNDVVLFLNIGFFLVLIYALFYICLDPKAGSLAALFCGFCWVSSCFVASWLGFSLAWK 120

Query: 397 IVLAAQLFCWTAQIIGHKVFEKRVPKIKNNLTKALVMEPFFVFLEALQMFFGYEPYSGFH 218
           +VL AQ+ CWT Q IGH VFEKR P + +NL +A VM PFFV LEALQ  FGYEPY GFH
Sbjct: 121 VVLVAQIICWTGQFIGHGVFEKRAPALLDNLVQAFVMAPFFVLLEALQTSFGYEPYPGFH 180

Query: 217 ASVQAKIDAELKTFRDSEQKKIS 149
           ASVQAKIDAE+K +++ + K +S
Sbjct: 181 ASVQAKIDAEIKEWKEKKLKLLS 203


>ref|XP_003613865.1| Endoplasmic reticulum membrane protein, putative [Medicago
           truncatula] gi|355515200|gb|AES96823.1| Endoplasmic
           reticulum membrane protein, putative [Medicago
           truncatula] gi|388516613|gb|AFK46368.1| unknown
           [Medicago truncatula]
          Length = 202

 Score =  243 bits (621), Expect = 3e-62
 Identities = 119/202 (58%), Positives = 147/202 (72%), Gaps = 3/202 (1%)
 Frame = -2

Query: 745 MAKSESFDFEKQFAYYGAYHRNPINYFIHMLFVWPILFSFLVLLSFTPSFLKLPHIEFSP 566
           M ++  FD EK FA+YG+YHRNPIN  IH+LFVWPI F+ LV L FTP F  LP+ EF  
Sbjct: 1   MGRTGLFDLEKHFAFYGSYHRNPINIAIHVLFVWPIFFTALVFLYFTPPFFDLPNFEFLL 60

Query: 565 FGN---LVLNFGLFPTLSYALFYISIDNRAGSLAAVFCVLSWVGGSLLAGRLGYSLAWKI 395
           FG    LV N G   TL Y++FY S+D +AGSLAA  CV+ WVG   +A +LG+SLAWKI
Sbjct: 61  FGCNFVLVWNIGFLVTLVYSVFYASLDLKAGSLAAFCCVVCWVGSCFVAHQLGWSLAWKI 120

Query: 394 VLAAQLFCWTAQIIGHKVFEKRVPKIKNNLTKALVMEPFFVFLEALQMFFGYEPYSGFHA 215
           VL  QL CW  Q IGH VFEKR P + +NLT+ALVM PFFV LEALQ  FGYEPY GFH+
Sbjct: 121 VLVTQLVCWIGQFIGHGVFEKRAPALLDNLTQALVMAPFFVLLEALQTVFGYEPYPGFHS 180

Query: 214 SVQAKIDAELKTFRDSEQKKIS 149
            VQAK++A ++ +++S+Q+ IS
Sbjct: 181 IVQAKVEANIEEWQESKQRLIS 202


>emb|CAN69808.1| hypothetical protein VITISV_019656 [Vitis vinifera]
          Length = 202

 Score =  243 bits (621), Expect = 3e-62
 Identities = 116/202 (57%), Positives = 142/202 (70%), Gaps = 3/202 (1%)
 Frame = -2

Query: 745 MAKSESFDFEKQFAYYGAYHRNPINYFIHMLFVWPILFSFLVLLSFTPSFLKLPHIEFSP 566
           M K   FD E+ FA+YGAYH +P+N F+HMLFVWP+ F+ LVL  FTPSF  LP I   P
Sbjct: 1   MGKMGLFDLERHFAFYGAYHSBPVNVFLHMLFVWPLFFTALVLFYFTPSFFILPQIGLLP 60

Query: 565 FG---NLVLNFGLFPTLSYALFYISIDNRAGSLAAVFCVLSWVGGSLLAGRLGYSLAWKI 395
            G     +LNFG   TL Y+LFY+ +D +AG LAA+ C   WVG S LA  LG+SLAWK+
Sbjct: 61  SGFNHTFLLNFGFLFTLIYSLFYVLLDKKAGCLAALLCFSCWVGSSFLASYLGFSLAWKV 120

Query: 394 VLAAQLFCWTAQIIGHKVFEKRVPKIKNNLTKALVMEPFFVFLEALQMFFGYEPYSGFHA 215
           VLA+QLFCWT Q IGH VFEKR P + +NL +A +M PFFV LEALQ   GYEPY GF  
Sbjct: 121 VLASQLFCWTGQFIGHGVFEKRAPALLDNLAQAFIMAPFFVLLEALQTTIGYEPYPGFSK 180

Query: 214 SVQAKIDAELKTFRDSEQKKIS 149
           +V+ KI A++K + D +QKKIS
Sbjct: 181 NVKEKIGADIKEWHDKKQKKIS 202


>ref|XP_002316127.1| predicted protein [Populus trichocarpa] gi|222865167|gb|EEF02298.1|
           predicted protein [Populus trichocarpa]
          Length = 196

 Score =  243 bits (619), Expect = 6e-62
 Identities = 116/194 (59%), Positives = 139/194 (71%), Gaps = 4/194 (2%)
 Frame = -2

Query: 727 FDFEKQFAYYGAYHRNPINYFIHMLFVWPILFSFLVLLSFTPSFLKLPHIEFSPFGN--- 557
           FD EK +A+YGAYH NPIN  IHM+FVWPI F+  ++L FTP    LP +E S FG+   
Sbjct: 3   FDLEKHYAFYGAYHSNPINILIHMIFVWPIFFASSLILYFTPPLFNLPQVELSLFGSNDV 62

Query: 556 -LVLNFGLFPTLSYALFYISIDNRAGSLAAVFCVLSWVGGSLLAGRLGYSLAWKIVLAAQ 380
            L LN G F  L YALFYI +D +AGSLAA+FC   WV    +A  LG+SLAWK+VL AQ
Sbjct: 63  VLFLNIGFFLVLIYALFYICLDPKAGSLAALFCGFCWVSSCFVASWLGFSLAWKVVLVAQ 122

Query: 379 LFCWTAQIIGHKVFEKRVPKIKNNLTKALVMEPFFVFLEALQMFFGYEPYSGFHASVQAK 200
           + CWT Q IGH VFEKR P + +NL +A VM PFFV LEALQ  FGYEPY GFHASVQAK
Sbjct: 123 IICWTGQFIGHGVFEKRAPALLDNLVQAFVMAPFFVLLEALQTSFGYEPYPGFHASVQAK 182

Query: 199 IDAELKTFRDSEQK 158
           IDAE+K +++ + K
Sbjct: 183 IDAEIKEWKEKKLK 196


>ref|XP_002284835.1| PREDICTED: uncharacterized endoplasmic reticulum membrane protein
           C16E8.02-like [Vitis vinifera]
          Length = 202

 Score =  242 bits (618), Expect = 8e-62
 Identities = 116/202 (57%), Positives = 142/202 (70%), Gaps = 3/202 (1%)
 Frame = -2

Query: 745 MAKSESFDFEKQFAYYGAYHRNPINYFIHMLFVWPILFSFLVLLSFTPSFLKLPHIEFSP 566
           M K   FD E+ FA+YGAYH +P+N F+HMLFVWP+ F+ LVL  FTPSF  LP I   P
Sbjct: 1   MGKMGLFDLERHFAFYGAYHSDPVNVFLHMLFVWPLFFTALVLFYFTPSFFILPQIGLLP 60

Query: 565 FG---NLVLNFGLFPTLSYALFYISIDNRAGSLAAVFCVLSWVGGSLLAGRLGYSLAWKI 395
            G     +LNFG   TL Y+LFY+ +D +AG LAA+ C   WVG S LA  LG+SLAWK+
Sbjct: 61  SGFNHTFLLNFGFLFTLIYSLFYVLLDKKAGCLAALLCFSCWVGSSFLASYLGFSLAWKV 120

Query: 394 VLAAQLFCWTAQIIGHKVFEKRVPKIKNNLTKALVMEPFFVFLEALQMFFGYEPYSGFHA 215
           VLA+QLFCWT Q IGH VFEKR P + +NL +A +M PFFV LEALQ   GYEPY GF  
Sbjct: 121 VLASQLFCWTGQFIGHGVFEKRAPALLDNLAQAFIMAPFFVLLEALQTTIGYEPYPGFSK 180

Query: 214 SVQAKIDAELKTFRDSEQKKIS 149
           +V+ KI A++K + D +QKKIS
Sbjct: 181 NVKEKIGADIKEWHDKKQKKIS 202


Top