BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000816
         (1186 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275926.1| PREDICTED: zinc finger CCCH domain-containin...   240   4e-61
emb|CAN83255.1| hypothetical protein VITISV_036981 [Vitis vinifera]   240   4e-61
emb|CBI20604.3| unnamed protein product [Vitis vinifera]              238   3e-60
ref|XP_003516267.1| PREDICTED: zinc finger CCCH domain-containin...   237   5e-60
ref|XP_003529068.1| PREDICTED: zinc finger CCCH domain-containin...   235   1e-59

>ref|XP_002275926.1| PREDICTED: zinc finger CCCH domain-containing protein 20 [Vitis
           vinifera]
          Length = 379

 Score =  240 bits (613), Expect = 4e-61
 Identities = 136/291 (46%), Positives = 165/291 (56%), Gaps = 69/291 (23%)
 Frame = -3

Query: 953 DSSILLDMFETDEFRMYEFKVRRCANNRPHDWTVCPFAHPGEKALRRDPRKYYYSGNPCP 774
           +S  ++D F  D+FRM+EFKVRRCA  R HDWT CP+AHPGEKA RRDPRK++YSG  CP
Sbjct: 79  ESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACP 138

Query: 773 EFRKGGECKKGNACEYAHGVFECWLHPARYRSQLCKASSRCRRRVCFFAHSHEQLRVTVP 594
           EFRK G CKKG++CE+AHGVFECWLHPARYR+Q CK  S CRRRVCFFAH+ EQLRV +P
Sbjct: 139 EFRK-GNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRV-LP 196

Query: 593 AES----------------------LKQLSYDSCEGSTLVSPPYSPLSGS---------- 510
            +S                      L + S+ S   STL+SPP SP S S          
Sbjct: 197 QQSPRNHGSAESYDGSPLRLAFDPYLSKGSFISSPTSTLISPPVSPPSDSPPMSPNSPSF 256

Query: 509 -NSIDEMDFMVSNMR------------------------------------LPADFNSNR 441
             S + M  +V++MR                                    LP+      
Sbjct: 257 TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLRPGFCSLPSTPTRTP 316

Query: 440 IRSGIQVEDLWSRGCLVEEPVMERVESGRNLRAAIFEKLSKRNSFGRGHSP 288
            RSG+   D+W + C  EEP MERVESGR+LRA I+ K+SK NS  R  SP
Sbjct: 317 ARSGLGGLDVWDKTC-EEEPAMERVESGRDLRARIYAKISKENSLDRDSSP 366


>emb|CAN83255.1| hypothetical protein VITISV_036981 [Vitis vinifera]
          Length = 426

 Score =  240 bits (613), Expect = 4e-61
 Identities = 136/291 (46%), Positives = 165/291 (56%), Gaps = 69/291 (23%)
 Frame = -3

Query: 953 DSSILLDMFETDEFRMYEFKVRRCANNRPHDWTVCPFAHPGEKALRRDPRKYYYSGNPCP 774
           +S  ++D F  D+FRM+EFKVRRCA  R HDWT CP+AHPGEKA RRDPRK++YSG  CP
Sbjct: 126 ESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACP 185

Query: 773 EFRKGGECKKGNACEYAHGVFECWLHPARYRSQLCKASSRCRRRVCFFAHSHEQLRVTVP 594
           EFRK G CKKG++CE+AHGVFECWLHPARYR+Q CK  S CRRRVCFFAH+ EQLRV +P
Sbjct: 186 EFRK-GNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRV-LP 243

Query: 593 AES----------------------LKQLSYDSCEGSTLVSPPYSPLSGS---------- 510
            +S                      L + S+ S   STL+SPP SP S S          
Sbjct: 244 QQSPRNHGSAESYDGSPLRLAFDPYLSKGSFISSPTSTLISPPVSPPSDSPPMSPNSPSF 303

Query: 509 -NSIDEMDFMVSNMR------------------------------------LPADFNSNR 441
             S + M  +V++MR                                    LP+      
Sbjct: 304 TGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLRPGFCSLPSTPTRTP 363

Query: 440 IRSGIQVEDLWSRGCLVEEPVMERVESGRNLRAAIFEKLSKRNSFGRGHSP 288
            RSG+   D+W + C  EEP MERVESGR+LRA I+ K+SK NS  R  SP
Sbjct: 364 ARSGLGGLDVWDKTC-EEEPAMERVESGRDLRARIYAKISKENSLDRDSSP 413


>emb|CBI20604.3| unnamed protein product [Vitis vinifera]
          Length = 306

 Score =  238 bits (606), Expect = 3e-60
 Identities = 126/239 (52%), Positives = 150/239 (62%), Gaps = 17/239 (7%)
 Frame = -3

Query: 953 DSSILLDMFETDEFRMYEFKVRRCANNRPHDWTVCPFAHPGEKALRRDPRKYYYSGNPCP 774
           +S  ++D F  D+FRM+EFKVRRCA  R HDWT CP+AHPGEKA RRDPRK++YSG  CP
Sbjct: 57  ESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACP 116

Query: 773 EFRKGGECKKGNACEYAHGVFECWLHPARYRSQLCKASSRCRRRVCFFAHSHEQLRVTVP 594
           EFRKG  CKKG++CE+AHGVFECWLHPARYR+Q CK  S CRRRVCFFAH+ EQLRV   
Sbjct: 117 EFRKGN-CKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRVLPQ 175

Query: 593 AESLKQLSYDSCEGSTL--------------VSPPYSPL---SGSNSIDEMDFMVSNMRL 465
                  S +S +GS L              +SP    +   SG  S            L
Sbjct: 176 QSPRNHGSAESYDGSPLRLAFDPNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLRPGFCSL 235

Query: 464 PADFNSNRIRSGIQVEDLWSRGCLVEEPVMERVESGRNLRAAIFEKLSKRNSFGRGHSP 288
           P+       RSG+   D+W + C  EEP MERVESGR+LRA I+ K+SK NS  R  SP
Sbjct: 236 PSTPTRTPARSGLGGLDVWDKTC-EEEPAMERVESGRDLRARIYAKISKENSLDRDSSP 293


>ref|XP_003516267.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like
           [Glycine max]
          Length = 350

 Score =  237 bits (604), Expect = 5e-60
 Identities = 126/264 (47%), Positives = 157/264 (59%), Gaps = 47/264 (17%)
 Frame = -3

Query: 938 LDMFETDEFRMYEFKVRRCANNRPHDWTVCPFAHPGEKALRRDPRKYYYSGNPCPEFRKG 759
           +D +  D FRMYEFKVRRCA  R HDWT CP+AHPGEKA RRDPR+++YSG  CPEFRKG
Sbjct: 79  VDAYTCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRRFHYSGVACPEFRKG 138

Query: 758 GECKKGNACEYAHGVFECWLHPARYRSQLCKASSRCRRRVCFFAHSHEQLRVTVPAES-- 585
             C+KG+ACE+AHGVFECWLHPARYR+Q CK  + CRRRVCFFAH+ EQLRV +P +S  
Sbjct: 139 N-CRKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRV-LPMQSPR 196

Query: 584 -------------LKQLSYDSCEGSTLVSPPYSPLSGSNSIDEMDFMVSNMR-------- 468
                        ++Q+S  S   +  +S P + LS   S   ++ MV+++R        
Sbjct: 197 SVANSSESYDGSPMRQVSLSSAAAAAFMSSPAASLSPPESPPSVNEMVASLRNLQLGKMK 256

Query: 467 ------------------------LPADFNSNRIRSGIQVEDLWSRGCLVEEPVMERVES 360
                                   LP       +RSG++  D+W      EEPVMERVES
Sbjct: 257 SMPHNRNVSVGSPRGSVLRPGFLSLPTTPTQQPVRSGVKCFDVWDES-FEEEPVMERVES 315

Query: 359 GRNLRAAIFEKLSKRNSFGRGHSP 288
           GR +RA +FEKLSK NS     SP
Sbjct: 316 GRGIRAKMFEKLSKENSLDASASP 339


>ref|XP_003529068.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like
           isoform 1 [Glycine max] gi|356520842|ref|XP_003529069.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           20-like isoform 2 [Glycine max]
          Length = 359

 Score =  235 bits (600), Expect = 1e-59
 Identities = 133/271 (49%), Positives = 159/271 (58%), Gaps = 53/271 (19%)
 Frame = -3

Query: 938 LDMFETDEFRMYEFKVRRCANNRPHDWTVCPFAHPGEKALRRDPRKYYYSGNPCPEFRKG 759
           +D +  D FRMYEFKVRRCA  R HDWT CP+AHPGEKA RRDPRK++YSG  CPEFRK 
Sbjct: 77  VDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRK- 135

Query: 758 GECKKGNACEYAHGVFECWLHPARYRSQLCKASSRCRRRVCFFAHSHEQLRVTVPAESLK 579
           G CKKG+ CE+AHGVFECWLHPARYR+Q CK  + CRRRVCFFAH+ EQLRV +P +S +
Sbjct: 136 GNCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRV-LPMQSPR 194

Query: 578 QL--SYDSCEGSTL----------------VSPPYSPLSGSNSIDEMDFMVSNMR----- 468
               S +S +GS +                +SPP SP   S SI+EM   + N++     
Sbjct: 195 SAANSSESYDGSPMRQMMSPAAFMSSPAASLSPPESP-PVSPSINEMVASLRNLQLGKMK 253

Query: 467 -----------------------------LPADFNSNRIRSGIQVEDLWSRGCLVEEPVM 375
                                        LP       +RSG+   D W + C  EEPVM
Sbjct: 254 SMPQSRNVSVGSPGYGSPRGSVLRPGFCSLPTTPTQQPVRSGVNCFDFWDQSC-EEEPVM 312

Query: 374 ERVESGRNLRAAIFEKLSKRNSF-GRGHSPG 285
           ERVESGR +RA +FEKLSK NS  G G   G
Sbjct: 313 ERVESGRGIRAKMFEKLSKENSLEGSGTGSG 343