BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000796
         (425 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         165   2e-45
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]   159   1e-44
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           156   5e-43
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]   156   6e-43
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   150   8e-43

>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  165 bits (417), Expect(2) = 2e-45
 Identities = 72/114 (63%), Positives = 93/114 (81%)
 Frame = +1

Query: 82  RMRCMLSHSKLFRSYWVETMRTAVHVINLSPSKSLNSDYPERVWSSKDVDYGYLRVFGCR 261
           R+RCML  +KL  S+W E + TAVHVINLSP  +L ++ P++VW  KDV Y +LRVFGC+
Sbjct: 590 RVRCMLDDAKLPSSFWAEAVSTAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCK 649

Query: 262 AFVHIPKDERSKLDDKAKQCIFLGYGDEMFGYKLYDPINKKVIRSRDVVFLEDQ 423
           AFVH+P+DERSKLD K +QCIF+GYG + FGY+LYDP+ KK++RSRDVVF E+Q
Sbjct: 650 AFVHVPRDERSKLDSKTRQCIFIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQ 703



 Score = 42.7 bits (99), Expect(2) = 2e-45
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   GIRHEQTVPKTPQQNGIAKRMNSTIVE 83
           GIRH++T PK PQ NG+A+RMN TI+E
Sbjct: 563 GIRHQKTPPKIPQLNGLAERMNRTIME 589


>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
          Length = 1207

 Score =  159 bits (402), Expect(2) = 1e-44
 Identities = 67/113 (59%), Positives = 89/113 (78%)
 Frame = +1

Query: 82  RMRCMLSHSKLFRSYWVETMRTAVHVINLSPSKSLNSDYPERVWSSKDVDYGYLRVFGCR 261
           R+RC+LS S+L RS+W E + T VHV+NL+P   L  D P+R+WS  ++ Y +LRVFGC+
Sbjct: 475 RVRCLLSQSQLPRSFWGEALNTVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCK 534

Query: 262 AFVHIPKDERSKLDDKAKQCIFLGYGDEMFGYKLYDPINKKVIRSRDVVFLED 420
           AFVHIPKDERSKLD K + C+F+GYG +  GY+ YDP+ KK++RSRDVVF+ED
Sbjct: 535 AFVHIPKDERSKLDAKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMED 587



 Score = 45.4 bits (106), Expect(2) = 1e-44
 Identities = 19/27 (70%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   GIRHEQTVPKTPQQNGIAKRMNSTIVE 83
           GIRH++T PKTPQ NG+A+RMN T+VE
Sbjct: 448 GIRHQKTSPKTPQLNGLAERMNRTLVE 474


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  156 bits (394), Expect(2) = 5e-43
 Identities = 66/114 (57%), Positives = 89/114 (78%)
 Frame = +1

Query: 82  RMRCMLSHSKLFRSYWVETMRTAVHVINLSPSKSLNSDYPERVWSSKDVDYGYLRVFGCR 261
           R RC+LSHSKL +++W E + TA +V+N SP   L    PE++W  +D+ Y  LRVFGC+
Sbjct: 592 RTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCK 651

Query: 262 AFVHIPKDERSKLDDKAKQCIFLGYGDEMFGYKLYDPINKKVIRSRDVVFLEDQ 423
           A+VH+PKDERSKLD K ++C+F+GYG +M GYK YDP+ KK++RSRDVVF+EDQ
Sbjct: 652 AYVHVPKDERSKLDVKTRECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQ 705



 Score = 43.5 bits (101), Expect(2) = 5e-43
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +3

Query: 3   GIRHEQTVPKTPQQNGIAKRMNSTIVE 83
           GIRH+ T PKTPQ NG+A+RMN T++E
Sbjct: 565 GIRHQFTPPKTPQLNGLAERMNRTLIE 591


>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
          Length = 1317

 Score =  156 bits (394), Expect(2) = 6e-43
 Identities = 66/113 (58%), Positives = 89/113 (78%)
 Frame = +1

Query: 82  RMRCMLSHSKLFRSYWVETMRTAVHVINLSPSKSLNSDYPERVWSSKDVDYGYLRVFGCR 261
           R+RC+LS S+L RS+W E + T VHV+NL+P   L  D  +R+WS+ ++ Y +LRVFGC+
Sbjct: 543 RVRCLLSQSQLPRSFWDEALNTVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCK 602

Query: 262 AFVHIPKDERSKLDDKAKQCIFLGYGDEMFGYKLYDPINKKVIRSRDVVFLED 420
           AFVHIPKDERSKLD K + C+F+GYG +  GY+ YDP+ KK++RSRDVVF+ED
Sbjct: 603 AFVHIPKDERSKLDVKTRPCVFIGYGQDELGYRFYDPVQKKLVRSRDVVFMED 655



 Score = 43.1 bits (100), Expect(2) = 6e-43
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +3

Query: 6   IRHEQTVPKTPQQNGIAKRMNSTIVE 83
           IRH++T PKTPQ NG+A+RMN T+VE
Sbjct: 517 IRHQKTPPKTPQLNGLAERMNRTLVE 542


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score =  150 bits (380), Expect(2) = 8e-43
 Identities = 67/114 (58%), Positives = 92/114 (80%)
 Frame = +1

Query: 82  RMRCMLSHSKLFRSYWVETMRTAVHVINLSPSKSLNSDYPERVWSSKDVDYGYLRVFGCR 261
           ++R ML  +KL +S+W E ++TA ++IN SPS  L  + PERVW++K+V Y +L+VFGCR
Sbjct: 595 KVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCR 654

Query: 262 AFVHIPKDERSKLDDKAKQCIFLGYGDEMFGYKLYDPINKKVIRSRDVVFLEDQ 423
           AF H+PK++R+KLDDK+  CIF+GYGDE FGY+L+DP+ KKVIRSRDVVF E +
Sbjct: 655 AFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESE 708



 Score = 48.1 bits (113), Expect(2) = 8e-43
 Identities = 21/27 (77%), Positives = 24/27 (88%)
 Frame = +3

Query: 3   GIRHEQTVPKTPQQNGIAKRMNSTIVE 83
           GIRHE+TVP TPQ NG+A+RMN TIVE
Sbjct: 568 GIRHEKTVPGTPQHNGVAERMNRTIVE 594