BLASTX nr result
ID: Coptis24_contig00000794
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00000794
(2558 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 179 e-101
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 164 3e-90
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 128 5e-79
emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera] 140 2e-73
emb|CAN71391.1| hypothetical protein VITISV_038145 [Vitis vinifera] 149 5e-65
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 179 bits (454), Expect(3) = e-101
Identities = 82/169 (48%), Positives = 116/169 (68%)
Frame = +1
Query: 1378 STSCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVG 1557
+ +C +T W++D+GA+YHVTP + FFT+Y+ G++GE+RMGN G K+ G G V +ET+ G
Sbjct: 281 NVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNG 340
Query: 1558 YTLTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQ 1737
L LK+V+H PDIRL+LIS GKLDDDGF FG+G WK+++GS+V ARG K+ +LY Q
Sbjct: 341 TKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQ 400
Query: 1738 ASLCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
+S+ LWHKRL HM +KG++ LAK+ + +K L
Sbjct: 401 SSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKL 449
Score = 134 bits (338), Expect(3) = e-101
Identities = 57/82 (69%), Positives = 74/82 (90%)
Frame = +3
Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
L+H+D+CGPM+V+S GASYF+TFIDD SRK+W Y+LK K +VLGVF++FH++VER+TGK
Sbjct: 479 LIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGK 538
Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
LKCIR+DNGGEY GPF+EYC+
Sbjct: 539 KLKCIRTDNGGEYCGPFDEYCR 560
Score = 105 bits (262), Expect(3) = e-101
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
++T PK PQ NG+AERMNRTI+ER+RCML +KLP S+W EA+ TAVHVINLSP L +
Sbjct: 567 QKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAEAVSTAVHVINLSPVIALKN 626
Query: 2509 DYPERVWSGRDVDYGY 2556
+ P++VW G+DV Y +
Sbjct: 627 EVPDKVWCGKDVSYDH 642
Score = 145 bits (365), Expect = 7e-32
Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 1/279 (0%)
Frame = +3
Query: 390 TRMMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXX 569
+ M+ LN +NY IWKAKM+DLL+ K L LP+ +DE
Sbjct: 6 SNMVRLNGRNYHIWKAKMKDLLFVKKLHLPVFASAKPENMSDEEWDFEHQQVCGYIRQWV 65
Query: 570 XXXXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEGS 749
+D+V +H+ ET A SLW KLE LY K+G NK+ ++K+ + +Y+EG+
Sbjct: 66 -----------EDNVLNHIINETHARSLWNKLETLYASKTGNNKLFLLKQMMNIRYREGT 114
Query: 750 SMSEHLNEVQNIINQMHLMKINLGDEVEALFLLGSLPESWETLAVSLHGAAKDGIVTMEM 929
+++H+N+ Q +++Q+ M I DEV L+LL +LP+SWET VSL +A +G+VTME
Sbjct: 115 LINDHVNDFQGVLDQLSGMGIKFEDEVLGLWLLNTLPDSWETFRVSLTNSAPNGVVTMEY 174
Query: 930 ATTSLLNEET-XXXXXXXXXXXEVLFTEXXXXXXXXXXXXXXXXXXXXXXXEARTPKAER 1106
+ +LNEE ++L T+ ++R+ +
Sbjct: 175 VKSGILNEEARRRSQDTSTSQSDILVTD-----DRGRNKQKGQRGRDKSRSKSRSRYKDI 229
Query: 1107 QCYYCATKGHFRYECRTLKRDEKNNCVHEDMVQRNGNTG 1223
+C+YC K H + KR++K + ++G+TG
Sbjct: 230 ECHYCGKKSHIKKYSFKWKREKKQD-------NKDGDTG 261
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 164 bits (414), Expect(3) = 3e-90
Identities = 78/165 (47%), Positives = 108/165 (65%)
Frame = +1
Query: 1390 QDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYTLT 1569
Q+ WVID+GA+ H TP R F++Y+ G++G V+MGN+ S ++G GDV +ET G L
Sbjct: 288 QEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLL 347
Query: 1570 LKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQASLC 1749
L+DVRHVPD+RL+LIS KLD++G+ N+F NG WKL++GS++ ARG K LY TQAS+
Sbjct: 348 LRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASIS 407
Query: 1750 KXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
+ LWH+RL HM K M L K+ A+P + L
Sbjct: 408 QQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQL 452
Score = 116 bits (290), Expect(3) = 3e-90
Identities = 54/82 (65%), Positives = 67/82 (81%)
Frame = +3
Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
LVH+D+CGP + KS GA YF+TFIDD SRK W Y+LKTKD+V VF++F ++VERETGK
Sbjct: 482 LVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGK 540
Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
LKCIR+DNGGEY G F+ YC+
Sbjct: 541 KLKCIRTDNGGEYQGQFDAYCK 562
Score = 102 bits (255), Expect(3) = 3e-90
Identities = 44/72 (61%), Positives = 57/72 (79%)
Frame = +1
Query: 2335 TVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNSDY 2514
T PKTPQ NG+AERMNRT++ER RC+LSHSKLP+++W EA+ TA +V+N SP PL
Sbjct: 571 TPPKTPQLNGLAERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKA 630
Query: 2515 PERVWSGRDVDY 2550
PE++W GRD+ Y
Sbjct: 631 PEKIWLGRDISY 642
Score = 149 bits (376), Expect = 4e-33
Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 1/265 (0%)
Frame = +3
Query: 390 TRMMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXX 569
++M++LN NY +W+ KM+DLL+ + LP+ + +K+DE
Sbjct: 6 SKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDE-----------DWEFEH 54
Query: 570 XXXXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEGS 749
+D+V++H++ T A SLW KLE+LY K+G NK+ + K KY EG+
Sbjct: 55 NQVCGYIRQFVEDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGT 114
Query: 750 SMSEHLNEVQNIINQMHLMKINLGDEVEALFLLGSLPESWETLAVSLHGAAKDGIVTMEM 929
++++HLNE+Q I++Q+ M I DEV AL +L +LPESWETL VS+ +A +G+V ME
Sbjct: 115 TVADHLNEIQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMET 174
Query: 930 ATTSLLNEETXXXXXXXXXXXEVLFTEXXXXXXXXXXXXXXXXXXXXXXXEARTPK-AER 1106
+ +LNEE ++ ++ K A
Sbjct: 175 VKSGILNEEMRRRSQGTSS------SQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANV 228
Query: 1107 QCYYCATKGHFRYECRTLKRDEKNN 1181
+C+YC KGH + CR + D+K N
Sbjct: 229 ECHYCKKKGHIKRFCRQFQNDQKKN 253
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 128 bits (322), Expect(3) = 5e-79
Identities = 54/82 (65%), Positives = 70/82 (85%)
Frame = +3
Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
LVH+D+CGP++VKS G YF+TFIDD SRK+W Y+LKTKD+VL F++FH +VER++GK
Sbjct: 476 LVHSDVCGPLKVKSFTGTIYFVTFIDDCSRKLWVYALKTKDQVLAKFKEFHVLVERQSGK 535
Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
LKCIR+DNGGEY GPF+ YC+
Sbjct: 536 KLKCIRTDNGGEYCGPFDAYCK 557
Score = 109 bits (273), Expect(3) = 5e-79
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +1
Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
E+T PKTPQ NG+AERMNRT++ER+RCMLS +KLP+ +W EA+ TAVHVINLSPA LN+
Sbjct: 564 EKTPPKTPQLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPAIALNA 623
Query: 2509 DYPERVWSGRDVDYGY 2556
+ P++VW G++V Y +
Sbjct: 624 EVPDKVWFGKNVKYDH 639
Score = 107 bits (266), Expect(3) = 5e-79
Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
Frame = +1
Query: 1498 NSGVS-KIIGIGDVHVETNVGYTLTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWK 1674
+SGV+ +IGI DV ++TN+G L L+ V+H PD+R +L+S LDD GF N FG G WK
Sbjct: 319 DSGVTLHVIGIADVCLQTNMGMQLLLRGVKHAPDVRFNLLSVQMLDDSGFENHFGLGKWK 378
Query: 1675 LSRGSIVAARGKKTCSLYKTQASLCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQK 1854
LSRG+++ A+G + LY T+A + K LWH+RL H+ KG+ LAK+
Sbjct: 379 LSRGNLIVAKGDRISKLYWTKALVAK--DSVNAMDMDASLWHRRLSHISEKGLNCLAKKD 436
Query: 1855 AMPDIKGTHL 1884
+ +K L
Sbjct: 437 VLSGLKNAEL 446
Score = 73.9 bits (180), Expect = 2e-10
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Frame = +3
Query: 675 YERKSGGNK-VLVVKK-----FADTKYQEGSSMSEHLNEVQNIINQMHLMKINLGDEVEA 836
Y ++G K +L VKK FA K ++ + Q +Q+ M I DEV
Sbjct: 104 YRPRTGKMKDLLFVKKLHLPVFATEKPKDKTDEEWKFEHQQGFRDQLSQMGIKFDDEVLG 163
Query: 837 LFLLGSLPESWETLAVSLHGAAKDGIVTMEMATTSLLNEETXXXXXXXXXXXEVLFTEXX 1016
L+LL +LP+SWET VS+ ++ DG+V++E +S+LNEE EVLFTE
Sbjct: 164 LWLLNTLPDSWETFRVSITNSSPDGVVSLENVKSSVLNEEMRRKAHGTSSHSEVLFTE-- 221
Query: 1017 XXXXXXXXXXXXXXXXXXXXXEARTPKAERQCYYCATKGHFRYECRTLKRDEKN 1178
++++ +C+YC GH + C K++ K+
Sbjct: 222 --NRGRSQKKELKGSKQNSRSKSKSRYKNVECHYCHKTGHIQRNCFLWKKENKD 273
>emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera]
Length = 776
Score = 140 bits (353), Expect(3) = 2e-73
Identities = 70/167 (41%), Positives = 102/167 (61%)
Frame = +1
Query: 1384 SCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYT 1563
+CQD+ WV+DT S+H+T H+ FF++Y+ G +G VRMGN +I+G+ DV +ET++G
Sbjct: 368 ACQDSTWVVDTAMSFHITTHKDFFSSYTSGSFGWVRMGNEAKCEIVGMRDVELETSIGCK 427
Query: 1564 LTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQAS 1743
+ KDVRHVP++ SLIS GK DD+G+ + G++ +LYKT+A
Sbjct: 428 MVFKDVRHVPEMCFSLISIGKFDDEGYHSHL----------------GEEKNTLYKTKAR 471
Query: 1744 LCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
L K LWHKRL H+ KG++VL ++K +P IKGT L
Sbjct: 472 LVKGEVNIVENEASTELWHKRLSHISEKGLQVLTRKKFLP-IKGTSL 517
Score = 98.6 bits (244), Expect(3) = 2e-73
Identities = 47/83 (56%), Positives = 62/83 (74%)
Frame = +3
Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
LVH D+C M+ + GA Y++TFIDD SRK+WAY+LK+K + L VF+ FH +ER+TGK
Sbjct: 547 LVHFDVC-TMQSNTLGGALYYVTFIDDHSRKVWAYALKSKYQALDVFKDFHVKIERQTGK 605
Query: 2184 LLKCIRSDNGGEYIGPFEEYCQS 2252
LK +R NG EY GPFE+YC+S
Sbjct: 606 QLKYVRVYNGHEYRGPFEQYCRS 628
Score = 87.8 bits (216), Expect(3) = 2e-73
Identities = 42/74 (56%), Positives = 57/74 (77%)
Frame = +1
Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
E+ V KTPQQN +A++MNRTI +RIRCMLSH+KL +S+ EAMRT + +INLSP+ PL
Sbjct: 634 EKIVHKTPQQNDVAKKMNRTICDRIRCMLSHAKLLKSFRGEAMRTTIDLINLSPSYPLEG 693
Query: 2509 DYPERVWSGRDVDY 2550
D P+RV + + V +
Sbjct: 694 DLPKRVLTRKFVSF 707
>emb|CAN71391.1| hypothetical protein VITISV_038145 [Vitis vinifera]
Length = 579
Score = 149 bits (375), Expect(3) = 5e-65
Identities = 74/167 (44%), Positives = 105/167 (62%)
Frame = +1
Query: 1384 SCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYT 1563
+CQD+ WV+DT S+H+T HR FF++Y+ G +G V MGN +I+G+GDV +ET +G
Sbjct: 162 ACQDSTWVVDTATSFHITAHRDFFSSYTNGSFGWVXMGNEAKCEIVGMGDVDLETXIGCK 221
Query: 1564 LTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQAS 1743
L LKDVRHVP +R SLIS GKLDD+G+ + G G WK+++GS+V RGKK +LYK +
Sbjct: 222 LVLKDVRHVPXMRFSLISVGKLDDEGYHSHLGEGKWKITKGSLVLXRGKKNNTLYKIEVR 281
Query: 1744 LCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
L K +G++VLA++K + +KGT L
Sbjct: 282 LVKG-----------------------EGLQVLARKKLL-XVKGTSL 304
Score = 103 bits (258), Expect(3) = 5e-65
Identities = 48/83 (57%), Positives = 65/83 (78%)
Frame = +3
Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
LVH ++C M+ + GA Y++TFIDD SRK+WAY+LK+K +VL VF+ FH +ER+TGK
Sbjct: 334 LVHINVC-TMQNNTLGGALYYVTFIDDHSRKVWAYALKSKGQVLNVFKDFHVKIERQTGK 392
Query: 2184 LLKCIRSDNGGEYIGPFEEYCQS 2252
LK +R +NGGEY GPFE+YC+S
Sbjct: 393 QLKFVRVNNGGEYKGPFEQYCRS 415
Score = 45.4 bits (106), Expect(3) = 5e-65
Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Frame = +1
Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCML-----SHSKLPR 2436
E+ V KTPQQNG+AERMNRTI +RIR + SKL R
Sbjct: 421 EKXVXKTPQQNGVAERMNRTICDRIRAFVHVPRDKQSKLDR 461
Score = 92.0 bits (227), Expect = 7e-16
Identities = 49/117 (41%), Positives = 65/117 (55%)
Frame = +3
Query: 396 MMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXXXX 575
M+ L NY+IWK +M+D+LYCK+L PIE G KP T E
Sbjct: 8 MIKLIASNYSIWKTRMKDILYCKELFEPIECRGYKPITTIE----------DEWKKLNRK 57
Query: 576 XXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEG 746
D SVFHHVA+E A+SLW+KLE LYERK+ K ++K+ + KY++G
Sbjct: 58 TVGXIRQWVDQSVFHHVAKEVDAYSLWQKLESLYERKTTQXKAFIIKRLVNLKYKDG 114