BLASTX nr result

ID: Coptis24_contig00000794 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000794
         (2558 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         179   e-101
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           164   3e-90
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      128   5e-79
emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera]   140   2e-73
emb|CAN71391.1| hypothetical protein VITISV_038145 [Vitis vinifera]   149   5e-65

>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  179 bits (454), Expect(3) = e-101
 Identities = 82/169 (48%), Positives = 116/169 (68%)
 Frame = +1

Query: 1378 STSCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVG 1557
            + +C +T W++D+GA+YHVTP + FFT+Y+ G++GE+RMGN G  K+ G G V +ET+ G
Sbjct: 281  NVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVCLETSNG 340

Query: 1558 YTLTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQ 1737
              L LK+V+H PDIRL+LIS GKLDDDGF   FG+G WK+++GS+V ARG K+ +LY  Q
Sbjct: 341  TKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSLVVARGNKSSNLYSLQ 400

Query: 1738 ASLCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
            +S+               LWHKRL HM +KG++ LAK+  +  +K   L
Sbjct: 401  SSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSKLSGVKEAKL 449



 Score =  134 bits (338), Expect(3) = e-101
 Identities = 57/82 (69%), Positives = 74/82 (90%)
 Frame = +3

Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
            L+H+D+CGPM+V+S  GASYF+TFIDD SRK+W Y+LK K +VLGVF++FH++VER+TGK
Sbjct: 479  LIHSDVCGPMKVRSLGGASYFVTFIDDYSRKLWVYTLKHKSDVLGVFKEFHALVERQTGK 538

Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
             LKCIR+DNGGEY GPF+EYC+
Sbjct: 539  KLKCIRTDNGGEYCGPFDEYCR 560



 Score =  105 bits (262), Expect(3) = e-101
 Identities = 46/76 (60%), Positives = 60/76 (78%)
 Frame = +1

Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
            ++T PK PQ NG+AERMNRTI+ER+RCML  +KLP S+W EA+ TAVHVINLSP   L +
Sbjct: 567  QKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAEAVSTAVHVINLSPVIALKN 626

Query: 2509 DYPERVWSGRDVDYGY 2556
            + P++VW G+DV Y +
Sbjct: 627  EVPDKVWCGKDVSYDH 642



 Score =  145 bits (365), Expect = 7e-32
 Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 1/279 (0%)
 Frame = +3

Query: 390  TRMMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXX 569
            + M+ LN +NY IWKAKM+DLL+ K L LP+         +DE                 
Sbjct: 6    SNMVRLNGRNYHIWKAKMKDLLFVKKLHLPVFASAKPENMSDEEWDFEHQQVCGYIRQWV 65

Query: 570  XXXXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEGS 749
                       +D+V +H+  ET A SLW KLE LY  K+G NK+ ++K+  + +Y+EG+
Sbjct: 66   -----------EDNVLNHIINETHARSLWNKLETLYASKTGNNKLFLLKQMMNIRYREGT 114

Query: 750  SMSEHLNEVQNIINQMHLMKINLGDEVEALFLLGSLPESWETLAVSLHGAAKDGIVTMEM 929
             +++H+N+ Q +++Q+  M I   DEV  L+LL +LP+SWET  VSL  +A +G+VTME 
Sbjct: 115  LINDHVNDFQGVLDQLSGMGIKFEDEVLGLWLLNTLPDSWETFRVSLTNSAPNGVVTMEY 174

Query: 930  ATTSLLNEET-XXXXXXXXXXXEVLFTEXXXXXXXXXXXXXXXXXXXXXXXEARTPKAER 1106
              + +LNEE             ++L T+                       ++R+   + 
Sbjct: 175  VKSGILNEEARRRSQDTSTSQSDILVTD-----DRGRNKQKGQRGRDKSRSKSRSRYKDI 229

Query: 1107 QCYYCATKGHFRYECRTLKRDEKNNCVHEDMVQRNGNTG 1223
            +C+YC  K H +      KR++K +        ++G+TG
Sbjct: 230  ECHYCGKKSHIKKYSFKWKREKKQD-------NKDGDTG 261


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  164 bits (414), Expect(3) = 3e-90
 Identities = 78/165 (47%), Positives = 108/165 (65%)
 Frame = +1

Query: 1390 QDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYTLT 1569
            Q+  WVID+GA+ H TP R  F++Y+ G++G V+MGN+  S ++G GDV +ET  G  L 
Sbjct: 288  QEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCLETMNGMKLL 347

Query: 1570 LKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQASLC 1749
            L+DVRHVPD+RL+LIS  KLD++G+ N+F NG WKL++GS++ ARG K   LY TQAS+ 
Sbjct: 348  LRDVRHVPDMRLNLISVDKLDEEGYCNTFHNGQWKLTKGSLMVARGTKQSKLYVTQASIS 407

Query: 1750 KXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
            +             LWH+RL HM  K M  L K+ A+P +    L
Sbjct: 408  QQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNALPGLNQIQL 452



 Score =  116 bits (290), Expect(3) = 3e-90
 Identities = 54/82 (65%), Positives = 67/82 (81%)
 Frame = +3

Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
            LVH+D+CGP + KS  GA YF+TFIDD SRK W Y+LKTKD+V  VF++F ++VERETGK
Sbjct: 482  LVHSDVCGPFK-KSLGGARYFVTFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGK 540

Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
             LKCIR+DNGGEY G F+ YC+
Sbjct: 541  KLKCIRTDNGGEYQGQFDAYCK 562



 Score =  102 bits (255), Expect(3) = 3e-90
 Identities = 44/72 (61%), Positives = 57/72 (79%)
 Frame = +1

Query: 2335 TVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNSDY 2514
            T PKTPQ NG+AERMNRT++ER RC+LSHSKLP+++W EA+ TA +V+N SP  PL    
Sbjct: 571  TPPKTPQLNGLAERMNRTLIERTRCLLSHSKLPKAFWGEALVTAAYVLNHSPCVPLQYKA 630

Query: 2515 PERVWSGRDVDY 2550
            PE++W GRD+ Y
Sbjct: 631  PEKIWLGRDISY 642



 Score =  149 bits (376), Expect = 4e-33
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 1/265 (0%)
 Frame = +3

Query: 390  TRMMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXX 569
            ++M++LN  NY +W+ KM+DLL+   + LP+ +     +K+DE                 
Sbjct: 6    SKMVNLNGTNYHLWRNKMKDLLFVTKMHLPVFSSQKPEDKSDE-----------DWEFEH 54

Query: 570  XXXXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEGS 749
                       +D+V++H++  T A SLW KLE+LY  K+G NK+  + K    KY EG+
Sbjct: 55   NQVCGYIRQFVEDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGT 114

Query: 750  SMSEHLNEVQNIINQMHLMKINLGDEVEALFLLGSLPESWETLAVSLHGAAKDGIVTMEM 929
            ++++HLNE+Q I++Q+  M I   DEV AL +L +LPESWETL VS+  +A +G+V ME 
Sbjct: 115  TVADHLNEIQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMET 174

Query: 930  ATTSLLNEETXXXXXXXXXXXEVLFTEXXXXXXXXXXXXXXXXXXXXXXXEARTPK-AER 1106
              + +LNEE                ++                         ++ K A  
Sbjct: 175  VKSGILNEEMRRRSQGTSS------SQSEVLAVTTRGRSQNKSQSNRDKSRGKSNKFANV 228

Query: 1107 QCYYCATKGHFRYECRTLKRDEKNN 1181
            +C+YC  KGH +  CR  + D+K N
Sbjct: 229  ECHYCKKKGHIKRFCRQFQNDQKKN 253


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  128 bits (322), Expect(3) = 5e-79
 Identities = 54/82 (65%), Positives = 70/82 (85%)
 Frame = +3

Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
            LVH+D+CGP++VKS  G  YF+TFIDD SRK+W Y+LKTKD+VL  F++FH +VER++GK
Sbjct: 476  LVHSDVCGPLKVKSFTGTIYFVTFIDDCSRKLWVYALKTKDQVLAKFKEFHVLVERQSGK 535

Query: 2184 LLKCIRSDNGGEYIGPFEEYCQ 2249
             LKCIR+DNGGEY GPF+ YC+
Sbjct: 536  KLKCIRTDNGGEYCGPFDAYCK 557



 Score =  109 bits (273), Expect(3) = 5e-79
 Identities = 48/76 (63%), Positives = 64/76 (84%)
 Frame = +1

Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
            E+T PKTPQ NG+AERMNRT++ER+RCMLS +KLP+ +W EA+ TAVHVINLSPA  LN+
Sbjct: 564  EKTPPKTPQLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALYTAVHVINLSPAIALNA 623

Query: 2509 DYPERVWSGRDVDYGY 2556
            + P++VW G++V Y +
Sbjct: 624  EVPDKVWFGKNVKYDH 639



 Score =  107 bits (266), Expect(3) = 5e-79
 Identities = 55/130 (42%), Positives = 79/130 (60%), Gaps = 1/130 (0%)
 Frame = +1

Query: 1498 NSGVS-KIIGIGDVHVETNVGYTLTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWK 1674
            +SGV+  +IGI DV ++TN+G  L L+ V+H PD+R +L+S   LDD GF N FG G WK
Sbjct: 319  DSGVTLHVIGIADVCLQTNMGMQLLLRGVKHAPDVRFNLLSVQMLDDSGFENHFGLGKWK 378

Query: 1675 LSRGSIVAARGKKTCSLYKTQASLCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQK 1854
            LSRG+++ A+G +   LY T+A + K             LWH+RL H+  KG+  LAK+ 
Sbjct: 379  LSRGNLIVAKGDRISKLYWTKALVAK--DSVNAMDMDASLWHRRLSHISEKGLNCLAKKD 436

Query: 1855 AMPDIKGTHL 1884
             +  +K   L
Sbjct: 437  VLSGLKNAEL 446



 Score = 73.9 bits (180), Expect = 2e-10
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
 Frame = +3

Query: 675  YERKSGGNK-VLVVKK-----FADTKYQEGSSMSEHLNEVQNIINQMHLMKINLGDEVEA 836
            Y  ++G  K +L VKK     FA  K ++ +         Q   +Q+  M I   DEV  
Sbjct: 104  YRPRTGKMKDLLFVKKLHLPVFATEKPKDKTDEEWKFEHQQGFRDQLSQMGIKFDDEVLG 163

Query: 837  LFLLGSLPESWETLAVSLHGAAKDGIVTMEMATTSLLNEETXXXXXXXXXXXEVLFTEXX 1016
            L+LL +LP+SWET  VS+  ++ DG+V++E   +S+LNEE            EVLFTE  
Sbjct: 164  LWLLNTLPDSWETFRVSITNSSPDGVVSLENVKSSVLNEEMRRKAHGTSSHSEVLFTE-- 221

Query: 1017 XXXXXXXXXXXXXXXXXXXXXEARTPKAERQCYYCATKGHFRYECRTLKRDEKN 1178
                                 ++++     +C+YC   GH +  C   K++ K+
Sbjct: 222  --NRGRSQKKELKGSKQNSRSKSKSRYKNVECHYCHKTGHIQRNCFLWKKENKD 273


>emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera]
          Length = 776

 Score =  140 bits (353), Expect(3) = 2e-73
 Identities = 70/167 (41%), Positives = 102/167 (61%)
 Frame = +1

Query: 1384 SCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYT 1563
            +CQD+ WV+DT  S+H+T H+ FF++Y+ G +G VRMGN    +I+G+ DV +ET++G  
Sbjct: 368  ACQDSTWVVDTAMSFHITTHKDFFSSYTSGSFGWVRMGNEAKCEIVGMRDVELETSIGCK 427

Query: 1564 LTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQAS 1743
            +  KDVRHVP++  SLIS GK DD+G+ +                  G++  +LYKT+A 
Sbjct: 428  MVFKDVRHVPEMCFSLISIGKFDDEGYHSHL----------------GEEKNTLYKTKAR 471

Query: 1744 LCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
            L K             LWHKRL H+  KG++VL ++K +P IKGT L
Sbjct: 472  LVKGEVNIVENEASTELWHKRLSHISEKGLQVLTRKKFLP-IKGTSL 517



 Score = 98.6 bits (244), Expect(3) = 2e-73
 Identities = 47/83 (56%), Positives = 62/83 (74%)
 Frame = +3

Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
            LVH D+C  M+  +  GA Y++TFIDD SRK+WAY+LK+K + L VF+ FH  +ER+TGK
Sbjct: 547  LVHFDVC-TMQSNTLGGALYYVTFIDDHSRKVWAYALKSKYQALDVFKDFHVKIERQTGK 605

Query: 2184 LLKCIRSDNGGEYIGPFEEYCQS 2252
             LK +R  NG EY GPFE+YC+S
Sbjct: 606  QLKYVRVYNGHEYRGPFEQYCRS 628



 Score = 87.8 bits (216), Expect(3) = 2e-73
 Identities = 42/74 (56%), Positives = 57/74 (77%)
 Frame = +1

Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCMLSHSKLPRSYWVEAMRTAVHVINLSPAKPLNS 2508
            E+ V KTPQQN +A++MNRTI +RIRCMLSH+KL +S+  EAMRT + +INLSP+ PL  
Sbjct: 634  EKIVHKTPQQNDVAKKMNRTICDRIRCMLSHAKLLKSFRGEAMRTTIDLINLSPSYPLEG 693

Query: 2509 DYPERVWSGRDVDY 2550
            D P+RV + + V +
Sbjct: 694  DLPKRVLTRKFVSF 707


>emb|CAN71391.1| hypothetical protein VITISV_038145 [Vitis vinifera]
          Length = 579

 Score =  149 bits (375), Expect(3) = 5e-65
 Identities = 74/167 (44%), Positives = 105/167 (62%)
 Frame = +1

Query: 1384 SCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVRMGNSGVSKIIGIGDVHVETNVGYT 1563
            +CQD+ WV+DT  S+H+T HR FF++Y+ G +G V MGN    +I+G+GDV +ET +G  
Sbjct: 162  ACQDSTWVVDTATSFHITAHRDFFSSYTNGSFGWVXMGNEAKCEIVGMGDVDLETXIGCK 221

Query: 1564 LTLKDVRHVPDIRLSLISAGKLDDDGFVNSFGNGVWKLSRGSIVAARGKKTCSLYKTQAS 1743
            L LKDVRHVP +R SLIS GKLDD+G+ +  G G WK+++GS+V  RGKK  +LYK +  
Sbjct: 222  LVLKDVRHVPXMRFSLISVGKLDDEGYHSHLGEGKWKITKGSLVLXRGKKNNTLYKIEVR 281

Query: 1744 LCKXXXXXXXXXXXXXLWHKRLCHMGIKGMEVLAKQKAMPDIKGTHL 1884
            L K                        +G++VLA++K +  +KGT L
Sbjct: 282  LVKG-----------------------EGLQVLARKKLL-XVKGTSL 304



 Score =  103 bits (258), Expect(3) = 5e-65
 Identities = 48/83 (57%), Positives = 65/83 (78%)
 Frame = +3

Query: 2004 LVHTDLCGPMRVKSHQGASYFLTFIDDASRKIWAYSLKTKDEVLGVFEKFHSMVERETGK 2183
            LVH ++C  M+  +  GA Y++TFIDD SRK+WAY+LK+K +VL VF+ FH  +ER+TGK
Sbjct: 334  LVHINVC-TMQNNTLGGALYYVTFIDDHSRKVWAYALKSKGQVLNVFKDFHVKIERQTGK 392

Query: 2184 LLKCIRSDNGGEYIGPFEEYCQS 2252
             LK +R +NGGEY GPFE+YC+S
Sbjct: 393  QLKFVRVNNGGEYKGPFEQYCRS 415



 Score = 45.4 bits (106), Expect(3) = 5e-65
 Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
 Frame = +1

Query: 2329 EQTVPKTPQQNGIAERMNRTIVERIRCML-----SHSKLPR 2436
            E+ V KTPQQNG+AERMNRTI +RIR  +       SKL R
Sbjct: 421  EKXVXKTPQQNGVAERMNRTICDRIRAFVHVPRDKQSKLDR 461



 Score = 92.0 bits (227), Expect = 7e-16
 Identities = 49/117 (41%), Positives = 65/117 (55%)
 Frame = +3

Query: 396 MMSLNRKNYTIWKAKMEDLLYCKDLALPIENEGVKPEKTDEAXXXXXXXXXXXXXXXXXX 575
           M+ L   NY+IWK +M+D+LYCK+L  PIE  G KP  T E                   
Sbjct: 8   MIKLIASNYSIWKTRMKDILYCKELFEPIECRGYKPITTIE----------DEWKKLNRK 57

Query: 576 XXXXXXXXXDDSVFHHVAQETTAFSLWKKLEDLYERKSGGNKVLVVKKFADTKYQEG 746
                    D SVFHHVA+E  A+SLW+KLE LYERK+   K  ++K+  + KY++G
Sbjct: 58  TVGXIRQWVDQSVFHHVAKEVDAYSLWQKLESLYERKTTQXKAFIIKRLVNLKYKDG 114


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