BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000745
         (1854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3...   540   e-151
ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|2...   509   e-142
ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|A...   506   e-140
ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis tha...   505   e-140
ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group] g...   500   e-139

>ref|XP_002279464.2| PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like
            [Vitis vinifera] gi|297738654|emb|CBI27899.3| unnamed
            protein product [Vitis vinifera]
          Length = 421

 Score =  540 bits (1390), Expect = e-151
 Identities = 278/370 (75%), Positives = 313/370 (84%), Gaps = 1/370 (0%)
 Frame = -2

Query: 1655 MARLLRNPFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1476
            MARLLRN  SL+ SL A +  R  +LGTS+Q  NF                +ENLSKK+L
Sbjct: 1    MARLLRNASSLRHSLFAVEGFRKGVLGTSSQFCNFSSKGRRRSKSDGSDSNEENLSKKEL 60

Query: 1475 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1296
            AL+QA+DQIT +FGKG+IMWLGR+ S ++VPVVSTGSF+LD+ LGIGGLPKGRVVEIYGP
Sbjct: 61   ALRQALDQITTSFGKGSIMWLGRSVSSKHVPVVSTGSFALDIVLGIGGLPKGRVVEIYGP 120

Query: 1295 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1116
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALDP+LAEAIGV T+NLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDPALAEAIGVNTQNLLLSQPDCGEQALS 180

Query: 1115 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 936
            LVDTLIRSG           ALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 935  ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQV 759
            ILIF NQ+R+KLSTFG F GP EVT GGNALKFYASVRLN+KRIGLVKKGEET+GSQV V
Sbjct: 241  ILIFINQVRAKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQVLV 300

Query: 758  KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDA 579
            K+VKNKHAPPF+TAQFELEFGKGI RESEIVELG KHKFI+KGGGA Y +N Q+F G+DA
Sbjct: 301  KVVKNKHAPPFKTAQFELEFGKGICRESEIVELGCKHKFIIKGGGAMYSYNGQSFRGKDA 360

Query: 578  LKRYLAENDN 549
            +K++L++N++
Sbjct: 361  IKQFLSQNES 370


>ref|XP_002308284.1| predicted protein [Populus trichocarpa] gi|222854260|gb|EEE91807.1|
            predicted protein [Populus trichocarpa]
          Length = 418

 Score =  509 bits (1312), Expect = e-142
 Identities = 271/419 (64%), Positives = 319/419 (76%)
 Frame = -2

Query: 1655 MARLLRNPFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1476
            MARLLRN  SL+++L+A +  R  +LGTSTQI NF                +EN+SKK+L
Sbjct: 1    MARLLRNASSLRRALVAPEGIRRGVLGTSTQICNFATKGKRKSKSDGSESGEENMSKKEL 60

Query: 1475 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1296
            AL+QA+DQIT+ FGKGAIMW GR+ +P+NVPVVSTGSF+LD+ALG GG PKGRVVEI+GP
Sbjct: 61   ALQQALDQITSQFGKGAIMWFGRSEAPKNVPVVSTGSFALDIALGCGGFPKGRVVEIFGP 120

Query: 1295 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1116
            EASGKTTLALHVIAE+QK GGYCVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGYCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 1115 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 936
            LVDTLIRSG           ALVPK ELDGEMGDAHMAMQARLMSQALRKLSHSLS SQT
Sbjct: 181  LVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQT 240

Query: 935  ILIFTNQIRSKLSTFGAFGPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQVK 756
            IL+F NQ+R+KLSTFG  GP EVT GGNALKFYASVRLN++R+G +KKGEET G+QVQVK
Sbjct: 241  ILVFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQVQVK 300

Query: 755  IVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDAL 576
            IVKNK APPF+T QFELEFGKGISRESEI+EL +KHK I K  G++Y  N + + G++A 
Sbjct: 301  IVKNKLAPPFKTVQFELEFGKGISRESEIIELALKHKLIKK-SGSFYDCNGKKYHGKEAF 359

Query: 575  KRYLAENDNXXXXXXXXXXXXLIHPGTDKVXXXXXXXXXXXPKLEIVSPDTVEDDLVSA 399
            K +LA ND+            L+   T +            P  EI+SPD+ ++++ +A
Sbjct: 360  KEFLAHNDDVQEELMMKLREKLLEGETGQ--ELGDESTDGEPTQEIISPDSTDEEVAAA 416


>ref|XP_003595205.1| RecA [Medicago truncatula] gi|355484253|gb|AES65456.1| RecA [Medicago
            truncatula]
          Length = 424

 Score =  506 bits (1302), Expect = e-140
 Identities = 268/374 (71%), Positives = 304/374 (81%), Gaps = 6/374 (1%)
 Frame = -2

Query: 1655 MARLLRNPFSLKQSL----LATQVC-RHAILGTSTQISNFXXXXXXXXXXXXXXXXDENL 1491
            MARLLR+ F L +S     L T+ C ++ +LGTS  +S                  +EN+
Sbjct: 1    MARLLRSTFFLNRSFFHHHLPTRFCSKNGVLGTSQVLSFSTNKGKKRSKSDGSDSGEENM 60

Query: 1490 SKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVV 1311
            SKKDLAL+QAMDQIT+TFGKG+IMWLGRT SP+NVPVVSTGSF+LD+ALGI GLPKGRVV
Sbjct: 61   SKKDLALQQAMDQITSTFGKGSIMWLGRTVSPKNVPVVSTGSFALDIALGIFGLPKGRVV 120

Query: 1310 EIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSG 1131
            EI+GPEASGKTTLALHVIAE+QK GGYC F+DAEHALD SLAE+IGV TENLLLSQPD G
Sbjct: 121  EIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHALDKSLAESIGVNTENLLLSQPDCG 180

Query: 1130 EQALSLVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSL 951
            EQALSLVDTLIRSG           ALVPKGELDGEMGDAHMAMQARLMSQALRKL HSL
Sbjct: 181  EQALSLVDTLIRSGSIDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSL 240

Query: 950  SLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVG 774
            SLSQ ILIF NQ+RSK+STFG F GP EVT GGNALKFY+SVRLN+KR+G VKKGEETVG
Sbjct: 241  SLSQCILIFINQVRSKISTFGGFGGPTEVTCGGNALKFYSSVRLNIKRVGFVKKGEETVG 300

Query: 773  SQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNF 594
            SQV VK+VKNKHAPPF+TAQFELEFGKGI RE+EI+EL IKHKFI K  G++Y++N +N+
Sbjct: 301  SQVLVKVVKNKHAPPFKTAQFELEFGKGICREAEIIELSIKHKFIKK-SGSFYEYNGKNY 359

Query: 593  CGRDALKRYLAEND 552
             G+DALK +L   D
Sbjct: 360  HGKDALKSHLINGD 373


>ref|NP_179539.2| DNA repair protein recA-like 3 [Arabidopsis thaliana]
            gi|209572665|sp|Q9ZUP2.2|RECA3_ARATH RecName: Full=DNA
            repair protein recA homolog 3, mitochondrial; AltName:
            Full=Recombinase A homolog 3; Flags: Precursor
            gi|119935859|gb|ABM06015.1| At2g19490 [Arabidopsis
            thaliana] gi|330251794|gb|AEC06888.1| DNA repair protein
            recA-like 3 [Arabidopsis thaliana]
          Length = 430

 Score =  505 bits (1300), Expect = e-140
 Identities = 261/370 (70%), Positives = 306/370 (82%), Gaps = 1/370 (0%)
 Frame = -2

Query: 1655 MARLLRNPFSLKQSLLATQVCRHAILGTSTQISNFXXXXXXXXXXXXXXXXDENLSKKDL 1476
            MAR+LRN +SL+ SL ++++ R +++GTS Q+  F                +E +SKK++
Sbjct: 1    MARILRNVYSLRSSLFSSELLRRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEI 60

Query: 1475 ALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKGRVVEIYGP 1296
            AL+QA+DQIT++FGKG+IM+LGR  SPRNVPV STGSF+LD+ALG+GGLPKGRVVEIYGP
Sbjct: 61   ALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGP 120

Query: 1295 EASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQPDSGEQALS 1116
            EASGKTTLALHVIAE+QK GG CVFVDAEHALD SLA+AIGV TENLLLSQPD GEQALS
Sbjct: 121  EASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALS 180

Query: 1115 LVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 936
            LVDTLIRSG           ALVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT
Sbjct: 181  LVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQT 240

Query: 935  ILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEETVGSQVQV 759
            +LIF NQ+RSKLSTFG F GP EVT GGNALKFYAS+RLN+KRIGL+KKGEET GSQV V
Sbjct: 241  LLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSV 300

Query: 758  KIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFNDQNFCGRDA 579
            KIVKNK APPFRTAQFELEFGKGI + +EI++L IKHKFI K  G +Y  N +N+ G++A
Sbjct: 301  KIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAK-NGTFYNLNGKNYHGKEA 359

Query: 578  LKRYLAENDN 549
            LKR+L +N++
Sbjct: 360  LKRFLKQNES 369


>ref|NP_001045109.1| Os01g0901200 [Oryza sativa Japonica Group]
            gi|56784510|dbj|BAD82767.1| putative recA protein [Oryza
            sativa Japonica Group] gi|56784869|dbj|BAD82109.1|
            putative recA protein [Oryza sativa Japonica Group]
            gi|113534640|dbj|BAF07023.1| Os01g0901200 [Oryza sativa
            Japonica Group] gi|222619696|gb|EEE55828.1| hypothetical
            protein OsJ_04434 [Oryza sativa Japonica Group]
          Length = 429

 Score =  500 bits (1288), Expect = e-139
 Identities = 263/378 (69%), Positives = 300/378 (79%), Gaps = 9/378 (2%)
 Frame = -2

Query: 1655 MARLLRNPFSLKQSLLATQVC--------RHAILGTSTQISNFXXXXXXXXXXXXXXXXD 1500
            MA LLR   SL++++ A            +  I G++     F                +
Sbjct: 1    MANLLRRA-SLRRAVAAVAAAAAPCPESYKQGICGSTFHCRYFSSKAKKKTKSSGTDSGE 59

Query: 1499 ENLSKKDLALKQAMDQITATFGKGAIMWLGRTASPRNVPVVSTGSFSLDLALGIGGLPKG 1320
            ENLSKKDLAL QA+DQIT+ FGKGAIMWLGR+   R VPVVSTGSFSLDLALG GGLPKG
Sbjct: 60   ENLSKKDLALHQAIDQITSAFGKGAIMWLGRSEGRREVPVVSTGSFSLDLALGTGGLPKG 119

Query: 1319 RVVEIYGPEASGKTTLALHVIAESQKHGGYCVFVDAEHALDPSLAEAIGVKTENLLLSQP 1140
            RV+E+YGPEASGKTTLALHVIAE+QKHGGYC FVDAEHALDP+LAE+IGV T NLLLSQP
Sbjct: 120  RVIEVYGPEASGKTTLALHVIAEAQKHGGYCAFVDAEHALDPALAESIGVNTSNLLLSQP 179

Query: 1139 DSGEQALSLVDTLIRSGXXXXXXXXXXXALVPKGELDGEMGDAHMAMQARLMSQALRKLS 960
            D GEQALSLVDTLIRSG           ALVPK ELDGEMGDAH+A+QARLMSQALRKLS
Sbjct: 180  DCGEQALSLVDTLIRSGSVDVVVVDSVAALVPKSELDGEMGDAHVALQARLMSQALRKLS 239

Query: 959  HSLSLSQTILIFTNQIRSKLSTFGAF-GPQEVTSGGNALKFYASVRLNVKRIGLVKKGEE 783
            HSLSLSQTIL+F NQIRSK++TFG F GP EVTSGGNALKFYASVR+N+KRIGLVKKGEE
Sbjct: 240  HSLSLSQTILLFINQIRSKVTTFGGFGGPMEVTSGGNALKFYASVRMNIKRIGLVKKGEE 299

Query: 782  TVGSQVQVKIVKNKHAPPFRTAQFELEFGKGISRESEIVELGIKHKFIMKGGGAYYKFND 603
            T+GSQV VKIVKNKHAPPF+TAQFELEFGKGI R SE++ELG+KHK + K GGA+Y FN+
Sbjct: 300  TIGSQVLVKIVKNKHAPPFKTAQFELEFGKGICRSSELIELGLKHKLVKKLGGAFYSFNE 359

Query: 602  QNFCGRDALKRYLAENDN 549
            +++ G+DALK YL EN++
Sbjct: 360  ESYRGKDALKSYLNENES 377