BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000673
         (2366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ...   828   0.0  
emb|CBI17056.3| unnamed protein product [Vitis vinifera]              828   0.0  
ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p...   800   0.0  
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2...   796   0.0  
ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [S...   760   0.0  

>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
            vinifera]
          Length = 2214

 Score =  828 bits (2138), Expect = 0.0
 Identities = 413/570 (72%), Positives = 466/570 (81%), Gaps = 9/570 (1%)
 Frame = +2

Query: 2    TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181
            TAD+FFSRALRDQQQVLWISD+GIPDLGG++E+DTCF DEVHQPVLTYPGAYRKV+VELK
Sbjct: 1656 TADLFFSRALRDQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELK 1715

Query: 182  IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLI 352
            IHHLAVNALLKSNQVNEMEGGALFGF+QD+N G H   EQ GFDE   CA  FRVLKQLI
Sbjct: 1716 IHHLAVNALLKSNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLI 1775

Query: 353  QRCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRL 532
            QRCL DA+  GNVFADA+LQHLYRWL SPQSKLHDP+LHR+LHKVMQKVFA+LLAE R+L
Sbjct: 1776 QRCLADAVSSGNVFADAILQHLYRWLYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKL 1835

Query: 533  GATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQ 712
            GATI+FA+FSKVIIDTGKSDLSAA AYCD LLKTLQ+RDLFEWIE+E  HFWHSLLFMDQ
Sbjct: 1836 GATIVFANFSKVIIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQ 1895

Query: 713  HNYGGILAKADN---LNSLDECANGVPE---VNIVSSWNIAEYLPSVTRDHFVLIVSEFL 874
            +NYGG+ A++     + S D  +  + +   V+IVSSWNIAE LP   +DHFVLIVSEF+
Sbjct: 1896 YNYGGVQARSHGGSLIGSSDPTSESIEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFM 1955

Query: 875  HKPWQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVR 1054
            + PW++A++QAA+ AS R+G  CTPSIT AAAE FES +TEYLK +ISSYF +++L+IVR
Sbjct: 1956 YTPWKYAREQAANRASARNGDSCTPSITAAAAEVFESHITEYLKEQISSYFADKLLRIVR 2015

Query: 1055 DTIHHVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMR 1234
            DT+ H+ G+N+S+ND              H GDAALEFIK+VCAVL+LDQNVQ DILVMR
Sbjct: 2016 DTVLHMKGMNRSENDQ-------------HTGDAALEFIKHVCAVLALDQNVQHDILVMR 2062

Query: 1235 KILLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQ 1414
            K LL++V VREF PE EF DPCQSFILPNVICSYCN               QEW CAVPQ
Sbjct: 2063 KNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDCRDLDLCRDSALLAQEWRCAVPQ 2122

Query: 1415 CGQPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVS 1594
            CGQPYD EVMENAL QI RQRER+YH+QDLVCLKC QVK AHLAEQCSC GSFRCKEDVS
Sbjct: 2123 CGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQVKAAHLAEQCSCAGSFRCKEDVS 2182

Query: 1595 EFCSKMQVFLSIANRQSFLLLQESISWILE 1684
            EF SKMQVFL IA  Q F LLQE  SWILE
Sbjct: 2183 EFQSKMQVFLKIAMLQKFQLLQECTSWILE 2212


>emb|CBI17056.3| unnamed protein product [Vitis vinifera]
          Length = 2723

 Score =  828 bits (2138), Expect = 0.0
 Identities = 413/570 (72%), Positives = 466/570 (81%), Gaps = 9/570 (1%)
 Frame = +2

Query: 2    TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181
            TAD+FFSRALRDQQQVLWISD+GIPDLGG++E+DTCF DEVHQPVLTYPGAYRKV+VELK
Sbjct: 2165 TADLFFSRALRDQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELK 2224

Query: 182  IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLI 352
            IHHLAVNALLKSNQVNEMEGGALFGF+QD+N G H   EQ GFDE   CA  FRVLKQLI
Sbjct: 2225 IHHLAVNALLKSNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLI 2284

Query: 353  QRCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRL 532
            QRCL DA+  GNVFADA+LQHLYRWL SPQSKLHDP+LHR+LHKVMQKVFA+LLAE R+L
Sbjct: 2285 QRCLADAVSSGNVFADAILQHLYRWLYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKL 2344

Query: 533  GATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQ 712
            GATI+FA+FSKVIIDTGKSDLSAA AYCD LLKTLQ+RDLFEWIE+E  HFWHSLLFMDQ
Sbjct: 2345 GATIVFANFSKVIIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQ 2404

Query: 713  HNYGGILAKADN---LNSLDECANGVPE---VNIVSSWNIAEYLPSVTRDHFVLIVSEFL 874
            +NYGG+ A++     + S D  +  + +   V+IVSSWNIAE LP   +DHFVLIVSEF+
Sbjct: 2405 YNYGGVQARSHGGSLIGSSDPTSESIEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFM 2464

Query: 875  HKPWQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVR 1054
            + PW++A++QAA+ AS R+G  CTPSIT AAAE FES +TEYLK +ISSYF +++L+IVR
Sbjct: 2465 YTPWKYAREQAANRASARNGDSCTPSITAAAAEVFESHITEYLKEQISSYFADKLLRIVR 2524

Query: 1055 DTIHHVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMR 1234
            DT+ H+ G+N+S+ND              H GDAALEFIK+VCAVL+LDQNVQ DILVMR
Sbjct: 2525 DTVLHMKGMNRSENDQ-------------HTGDAALEFIKHVCAVLALDQNVQHDILVMR 2571

Query: 1235 KILLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQ 1414
            K LL++V VREF PE EF DPCQSFILPNVICSYCN               QEW CAVPQ
Sbjct: 2572 KNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDCRDLDLCRDSALLAQEWRCAVPQ 2631

Query: 1415 CGQPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVS 1594
            CGQPYD EVMENAL QI RQRER+YH+QDLVCLKC QVK AHLAEQCSC GSFRCKEDVS
Sbjct: 2632 CGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQVKAAHLAEQCSCAGSFRCKEDVS 2691

Query: 1595 EFCSKMQVFLSIANRQSFLLLQESISWILE 1684
            EF SKMQVFL IA  Q F LLQE  SWILE
Sbjct: 2692 EFQSKMQVFLKIAMLQKFQLLQECTSWILE 2721


>ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus
            communis] gi|223531477|gb|EEF33309.1| DNA polymerase
            epsilon, catalytic subunit, putative [Ricinus communis]
          Length = 2227

 Score =  800 bits (2066), Expect = 0.0
 Identities = 398/568 (70%), Positives = 464/568 (81%), Gaps = 7/568 (1%)
 Frame = +2

Query: 2    TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181
            TAD+F SRALRDQQQ+LWISDDG+PDLGGISE+ +CF DEVHQP+LTYPGAYRKV+VELK
Sbjct: 1660 TADVFISRALRDQQQLLWISDDGVPDLGGISEESSCFADEVHQPILTYPGAYRKVSVELK 1719

Query: 182  IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH--EQTGFDETRSCASAFRVLKQLIQ 355
            IHHLAVNALLKS+QVNEMEGGAL GFDQD+++G H  EQ G DE  S A A RVLKQLIQ
Sbjct: 1720 IHHLAVNALLKSSQVNEMEGGALLGFDQDMSSGSHICEQYGVDEATSSAPALRVLKQLIQ 1779

Query: 356  RCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLG 535
            RCL DA+  G+VFADALLQHLYRWLCSPQSKLHDP+LHRVLHKVMQKVFA+LLAE R+LG
Sbjct: 1780 RCLADAVTSGSVFADALLQHLYRWLCSPQSKLHDPALHRVLHKVMQKVFALLLAEFRKLG 1839

Query: 536  ATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQH 715
            ATIIFA+FSKVIIDTGK  LSAA AYCD LLKTLQ+R+LFEWIELE   FWHSLLFMDQ+
Sbjct: 1840 ATIIFANFSKVIIDTGKFSLSAAKAYCDSLLKTLQTRELFEWIELEPLQFWHSLLFMDQY 1899

Query: 716  NYGGILAKADNLNSLDE----CANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKP 883
            NYGGI A+AD+++  +           +V+IVSSWNIAEYLP   +DHFVLIVSEF+  P
Sbjct: 1900 NYGGIPARADDISHSESQGAHSQRQESQVDIVSSWNIAEYLPKTIQDHFVLIVSEFMFIP 1959

Query: 884  WQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTI 1063
            W++AQKQ A+ AS +D + CTPSIT +AAET+ES + EYLKG+IS+YFT+++L IVR+T+
Sbjct: 1960 WEYAQKQDANKASLQDVSSCTPSITISAAETYESHIVEYLKGQISTYFTDKLLGIVRETV 2019

Query: 1064 HHVNGINKSKNDARAH-VPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKI 1240
             H+ GINKS+ND  +   P+++   NIH    ALEFIK+VCAVL+LD NVQ ++LVMRK 
Sbjct: 2020 LHMKGINKSENDQPSSGFPQVAG--NIHKRVPALEFIKHVCAVLALDLNVQHEVLVMRKN 2077

Query: 1241 LLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCG 1420
            LL++VRVREF PE EF DPC SF+LPNVICSYCN               QEW CAVPQCG
Sbjct: 2078 LLKYVRVREFAPEAEFHDPCPSFVLPNVICSYCNDCRDLDLCRDTALLAQEWRCAVPQCG 2137

Query: 1421 QPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEF 1600
            QPYD E MENAL QI RQRER+YHLQDLVC++C QVK AHLAEQC+C G++RCKEDVSEF
Sbjct: 2138 QPYDREGMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGAYRCKEDVSEF 2197

Query: 1601 CSKMQVFLSIANRQSFLLLQESISWILE 1684
             SKMQ+FL++A  Q F LLQE  SWILE
Sbjct: 2198 RSKMQIFLNVAISQKFQLLQECTSWILE 2225


>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
            predicted protein [Populus trichocarpa]
          Length = 2221

 Score =  796 bits (2055), Expect = 0.0
 Identities = 392/566 (69%), Positives = 455/566 (80%), Gaps = 5/566 (0%)
 Frame = +2

Query: 2    TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181
            TAD+FFSRAL DQQQVLWISDDG+PDLGG  E+ TCF DEV QPVLTYPGAYRKV+VELK
Sbjct: 1653 TADVFFSRALHDQQQVLWISDDGVPDLGGNHEESTCFADEVQQPVLTYPGAYRKVSVELK 1712

Query: 182  IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGP--HEQTGFDETRSCASAFRVLKQLIQ 355
            IHHLAV+ALLKSNQ+NEMEGGAL GFDQD+N+    ++Q+GFDE  S AS  RVLKQLIQ
Sbjct: 1713 IHHLAVDALLKSNQINEMEGGALLGFDQDMNSSTTLYDQSGFDEATSSASGLRVLKQLIQ 1772

Query: 356  RCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLG 535
            RCL DA+  GNVFADA+LQHLYRWLCSPQSKLHDP+LHR+LHKVMQKVFA+LLAELR+LG
Sbjct: 1773 RCLADAVTSGNVFADAILQHLYRWLCSPQSKLHDPALHRILHKVMQKVFALLLAELRKLG 1832

Query: 536  ATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQH 715
            ATIIFA+FSKVIIDTGK +L+AA AYCD +LKTLQ+R+LFEWIELE   FWHSLLFMDQ+
Sbjct: 1833 ATIIFANFSKVIIDTGKFELTAAKAYCDSVLKTLQNRELFEWIELEPLQFWHSLLFMDQY 1892

Query: 716  NYGGILAKADNLNSLD---ECANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKPW 886
            NYGGI A+ D+ +  D         P+V+IVS+WNIAEYLP   +DHFVLIVSEF+  PW
Sbjct: 1893 NYGGIPARPDDSSHNDLHHHSPREEPKVDIVSNWNIAEYLPKKIQDHFVLIVSEFMFIPW 1952

Query: 887  QFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTIH 1066
             +AQKQAA   + RDG  CTPSIT  AAE FES + EY+KG+I ++FT+++L I RDT+ 
Sbjct: 1953 DYAQKQAATREALRDGNSCTPSITIVAAENFESHMVEYIKGQIGTHFTDKLLGIARDTVL 2012

Query: 1067 HVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKILL 1246
            H+ GINKS+N  +  +         H GD ALEFIK+VCAVL+LDQ+VQ ++LVMRK LL
Sbjct: 2013 HMKGINKSENGQQISLGIQQPAGMNHKGDPALEFIKHVCAVLALDQHVQHEVLVMRKNLL 2072

Query: 1247 RFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCGQP 1426
            ++VRVREF PE EF DPC SFILPNVICSYCN               +EW CAVPQCGQP
Sbjct: 2073 KYVRVREFAPEAEFHDPCPSFILPNVICSYCNDCRDLDLCRDSAVLAEEWRCAVPQCGQP 2132

Query: 1427 YDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEFCS 1606
            YD EVMENAL QI RQRER+YHLQDLVCL+C QVK AHL+EQCSC GS+RC+EDVSEF  
Sbjct: 2133 YDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLSEQCSCAGSYRCREDVSEFRR 2192

Query: 1607 KMQVFLSIANRQSFLLLQESISWILE 1684
            KMQ+FL++A RQ F LLQE  SWILE
Sbjct: 2193 KMQIFLNVAIRQKFQLLQECTSWILE 2218


>ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [Sorghum bicolor]
            gi|241931984|gb|EES05129.1| hypothetical protein
            SORBIDRAFT_04g020730 [Sorghum bicolor]
          Length = 2135

 Score =  760 bits (1963), Expect = 0.0
 Identities = 373/562 (66%), Positives = 442/562 (78%), Gaps = 1/562 (0%)
 Frame = +2

Query: 2    TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181
            TAD+FFSRALRDQQQVLWISDDGIPDLGG  E +TCF DEV QP LTYPGAYR+V+VELK
Sbjct: 1579 TADVFFSRALRDQQQVLWISDDGIPDLGGTYEGETCFADEVIQPALTYPGAYRRVSVELK 1638

Query: 182  IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH-EQTGFDETRSCASAFRVLKQLIQR 358
            IHHLAVNALLKS+QV+EMEGG++  F  D+  GPH  +T FD+   C  AF+VLKQLIQR
Sbjct: 1639 IHHLAVNALLKSSQVDEMEGGSIGSFGNDVPPGPHGTETDFDDASLCIPAFQVLKQLIQR 1698

Query: 359  CLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLGA 538
            C+ DA+  GNVFADA+LQHLYRWLCSP+SKLHDP+LHR+LH VM+KVFA+LLAE R+LGA
Sbjct: 1699 CISDAVSSGNVFADAILQHLYRWLCSPRSKLHDPALHRLLHNVMKKVFALLLAEFRKLGA 1758

Query: 539  TIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQHN 718
             +IFA+FSK+IIDTGK DLS+AHAYCD LLKTLQ+RDLFEWIELE  HFWHSLLFMDQ+N
Sbjct: 1759 NVIFANFSKIIIDTGKVDLSSAHAYCDSLLKTLQTRDLFEWIELEPLHFWHSLLFMDQYN 1818

Query: 719  YGGILAKADNLNSLDECANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKPWQFAQ 898
            YGGI AKA N++S D    G  +++IVSSWN+AE LP  T+DHFVLIVSEFL+ PW+F +
Sbjct: 1819 YGGIQAKAQNVDSSD----GDNDIDIVSSWNMAEDLPKDTQDHFVLIVSEFLYIPWKFMK 1874

Query: 899  KQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTIHHVNG 1078
            +Q A  A+ RD T CTPS+T  AAE  E  V  +L+ +IS+YF +++L+ V D +HH  G
Sbjct: 1875 EQVATQATIRDDTSCTPSVTVMAAENLEGQVIAHLRDKISNYFADKLLRTVSDILHHFKG 1934

Query: 1079 INKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKILLRFVR 1258
             +K ++D  A+     S  + H GDAALEFIK+VCAVL+LDQNVQ DIL MRK LL+ VR
Sbjct: 1935 KSKHESDEPANR---ESDPHTHKGDAALEFIKHVCAVLALDQNVQHDILRMRKNLLKLVR 1991

Query: 1259 VREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCGQPYDCE 1438
            V+EF PE +F DPC SF LPNVICSYCN               QEW CAVPQCGQPY  E
Sbjct: 1992 VKEFAPEAQFQDPCASFTLPNVICSYCNDCRDLDLCRDSTLQGQEWRCAVPQCGQPYHRE 2051

Query: 1439 VMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEFCSKMQV 1618
             MENAL Q+ RQRER+YHLQDLVC++C QVK AHL+EQCSCGGSFRCKE+ S F SKM+V
Sbjct: 2052 QMENALLQVVRQRERLYHLQDLVCVRCRQVKAAHLSEQCSCGGSFRCKEESSYFLSKMRV 2111

Query: 1619 FLSIANRQSFLLLQESISWILE 1684
            FL +A  Q F LLQ+ + WILE
Sbjct: 2112 FLKVAVNQKFQLLQDCVQWILE 2133