BLASTX nr result
ID: Coptis24_contig00000673
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000673 (2366 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ... 828 0.0 emb|CBI17056.3| unnamed protein product [Vitis vinifera] 828 0.0 ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p... 800 0.0 ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2... 796 0.0 ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [S... 760 0.0 >ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera] Length = 2214 Score = 828 bits (2138), Expect = 0.0 Identities = 413/570 (72%), Positives = 466/570 (81%), Gaps = 9/570 (1%) Frame = +2 Query: 2 TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181 TAD+FFSRALRDQQQVLWISD+GIPDLGG++E+DTCF DEVHQPVLTYPGAYRKV+VELK Sbjct: 1656 TADLFFSRALRDQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELK 1715 Query: 182 IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLI 352 IHHLAVNALLKSNQVNEMEGGALFGF+QD+N G H EQ GFDE CA FRVLKQLI Sbjct: 1716 IHHLAVNALLKSNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLI 1775 Query: 353 QRCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRL 532 QRCL DA+ GNVFADA+LQHLYRWL SPQSKLHDP+LHR+LHKVMQKVFA+LLAE R+L Sbjct: 1776 QRCLADAVSSGNVFADAILQHLYRWLYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKL 1835 Query: 533 GATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQ 712 GATI+FA+FSKVIIDTGKSDLSAA AYCD LLKTLQ+RDLFEWIE+E HFWHSLLFMDQ Sbjct: 1836 GATIVFANFSKVIIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQ 1895 Query: 713 HNYGGILAKADN---LNSLDECANGVPE---VNIVSSWNIAEYLPSVTRDHFVLIVSEFL 874 +NYGG+ A++ + S D + + + V+IVSSWNIAE LP +DHFVLIVSEF+ Sbjct: 1896 YNYGGVQARSHGGSLIGSSDPTSESIEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFM 1955 Query: 875 HKPWQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVR 1054 + PW++A++QAA+ AS R+G CTPSIT AAAE FES +TEYLK +ISSYF +++L+IVR Sbjct: 1956 YTPWKYAREQAANRASARNGDSCTPSITAAAAEVFESHITEYLKEQISSYFADKLLRIVR 2015 Query: 1055 DTIHHVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMR 1234 DT+ H+ G+N+S+ND H GDAALEFIK+VCAVL+LDQNVQ DILVMR Sbjct: 2016 DTVLHMKGMNRSENDQ-------------HTGDAALEFIKHVCAVLALDQNVQHDILVMR 2062 Query: 1235 KILLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQ 1414 K LL++V VREF PE EF DPCQSFILPNVICSYCN QEW CAVPQ Sbjct: 2063 KNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDCRDLDLCRDSALLAQEWRCAVPQ 2122 Query: 1415 CGQPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVS 1594 CGQPYD EVMENAL QI RQRER+YH+QDLVCLKC QVK AHLAEQCSC GSFRCKEDVS Sbjct: 2123 CGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQVKAAHLAEQCSCAGSFRCKEDVS 2182 Query: 1595 EFCSKMQVFLSIANRQSFLLLQESISWILE 1684 EF SKMQVFL IA Q F LLQE SWILE Sbjct: 2183 EFQSKMQVFLKIAMLQKFQLLQECTSWILE 2212 >emb|CBI17056.3| unnamed protein product [Vitis vinifera] Length = 2723 Score = 828 bits (2138), Expect = 0.0 Identities = 413/570 (72%), Positives = 466/570 (81%), Gaps = 9/570 (1%) Frame = +2 Query: 2 TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181 TAD+FFSRALRDQQQVLWISD+GIPDLGG++E+DTCF DEVHQPVLTYPGAYRKV+VELK Sbjct: 2165 TADLFFSRALRDQQQVLWISDNGIPDLGGLNEEDTCFADEVHQPVLTYPGAYRKVSVELK 2224 Query: 182 IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH---EQTGFDETRSCASAFRVLKQLI 352 IHHLAVNALLKSNQVNEMEGGALFGF+QD+N G H EQ GFDE CA FRVLKQLI Sbjct: 2225 IHHLAVNALLKSNQVNEMEGGALFGFEQDMNMGAHGFNEQCGFDEATLCAPTFRVLKQLI 2284 Query: 353 QRCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRL 532 QRCL DA+ GNVFADA+LQHLYRWL SPQSKLHDP+LHR+LHKVMQKVFA+LLAE R+L Sbjct: 2285 QRCLADAVSSGNVFADAILQHLYRWLYSPQSKLHDPALHRILHKVMQKVFALLLAEFRKL 2344 Query: 533 GATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQ 712 GATI+FA+FSKVIIDTGKSDLSAA AYCD LLKTLQ+RDLFEWIE+E HFWHSLLFMDQ Sbjct: 2345 GATIVFANFSKVIIDTGKSDLSAAKAYCDSLLKTLQTRDLFEWIEIEPLHFWHSLLFMDQ 2404 Query: 713 HNYGGILAKADN---LNSLDECANGVPE---VNIVSSWNIAEYLPSVTRDHFVLIVSEFL 874 +NYGG+ A++ + S D + + + V+IVSSWNIAE LP +DHFVLIVSEF+ Sbjct: 2405 YNYGGVQARSHGGSLIGSSDPTSESIEDESQVDIVSSWNIAEQLPKTIQDHFVLIVSEFM 2464 Query: 875 HKPWQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVR 1054 + PW++A++QAA+ AS R+G CTPSIT AAAE FES +TEYLK +ISSYF +++L+IVR Sbjct: 2465 YTPWKYAREQAANRASARNGDSCTPSITAAAAEVFESHITEYLKEQISSYFADKLLRIVR 2524 Query: 1055 DTIHHVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMR 1234 DT+ H+ G+N+S+ND H GDAALEFIK+VCAVL+LDQNVQ DILVMR Sbjct: 2525 DTVLHMKGMNRSENDQ-------------HTGDAALEFIKHVCAVLALDQNVQHDILVMR 2571 Query: 1235 KILLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQ 1414 K LL++V VREF PE EF DPCQSFILPNVICSYCN QEW CAVPQ Sbjct: 2572 KNLLKYVHVREFAPEAEFCDPCQSFILPNVICSYCNDCRDLDLCRDSALLAQEWRCAVPQ 2631 Query: 1415 CGQPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVS 1594 CGQPYD EVMENAL QI RQRER+YH+QDLVCLKC QVK AHLAEQCSC GSFRCKEDVS Sbjct: 2632 CGQPYDREVMENALLQIVRQRERLYHVQDLVCLKCNQVKAAHLAEQCSCAGSFRCKEDVS 2691 Query: 1595 EFCSKMQVFLSIANRQSFLLLQESISWILE 1684 EF SKMQVFL IA Q F LLQE SWILE Sbjct: 2692 EFQSKMQVFLKIAMLQKFQLLQECTSWILE 2721 >ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus communis] gi|223531477|gb|EEF33309.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus communis] Length = 2227 Score = 800 bits (2066), Expect = 0.0 Identities = 398/568 (70%), Positives = 464/568 (81%), Gaps = 7/568 (1%) Frame = +2 Query: 2 TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181 TAD+F SRALRDQQQ+LWISDDG+PDLGGISE+ +CF DEVHQP+LTYPGAYRKV+VELK Sbjct: 1660 TADVFISRALRDQQQLLWISDDGVPDLGGISEESSCFADEVHQPILTYPGAYRKVSVELK 1719 Query: 182 IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH--EQTGFDETRSCASAFRVLKQLIQ 355 IHHLAVNALLKS+QVNEMEGGAL GFDQD+++G H EQ G DE S A A RVLKQLIQ Sbjct: 1720 IHHLAVNALLKSSQVNEMEGGALLGFDQDMSSGSHICEQYGVDEATSSAPALRVLKQLIQ 1779 Query: 356 RCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLG 535 RCL DA+ G+VFADALLQHLYRWLCSPQSKLHDP+LHRVLHKVMQKVFA+LLAE R+LG Sbjct: 1780 RCLADAVTSGSVFADALLQHLYRWLCSPQSKLHDPALHRVLHKVMQKVFALLLAEFRKLG 1839 Query: 536 ATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQH 715 ATIIFA+FSKVIIDTGK LSAA AYCD LLKTLQ+R+LFEWIELE FWHSLLFMDQ+ Sbjct: 1840 ATIIFANFSKVIIDTGKFSLSAAKAYCDSLLKTLQTRELFEWIELEPLQFWHSLLFMDQY 1899 Query: 716 NYGGILAKADNLNSLDE----CANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKP 883 NYGGI A+AD+++ + +V+IVSSWNIAEYLP +DHFVLIVSEF+ P Sbjct: 1900 NYGGIPARADDISHSESQGAHSQRQESQVDIVSSWNIAEYLPKTIQDHFVLIVSEFMFIP 1959 Query: 884 WQFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTI 1063 W++AQKQ A+ AS +D + CTPSIT +AAET+ES + EYLKG+IS+YFT+++L IVR+T+ Sbjct: 1960 WEYAQKQDANKASLQDVSSCTPSITISAAETYESHIVEYLKGQISTYFTDKLLGIVRETV 2019 Query: 1064 HHVNGINKSKNDARAH-VPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKI 1240 H+ GINKS+ND + P+++ NIH ALEFIK+VCAVL+LD NVQ ++LVMRK Sbjct: 2020 LHMKGINKSENDQPSSGFPQVAG--NIHKRVPALEFIKHVCAVLALDLNVQHEVLVMRKN 2077 Query: 1241 LLRFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCG 1420 LL++VRVREF PE EF DPC SF+LPNVICSYCN QEW CAVPQCG Sbjct: 2078 LLKYVRVREFAPEAEFHDPCPSFVLPNVICSYCNDCRDLDLCRDTALLAQEWRCAVPQCG 2137 Query: 1421 QPYDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEF 1600 QPYD E MENAL QI RQRER+YHLQDLVC++C QVK AHLAEQC+C G++RCKEDVSEF Sbjct: 2138 QPYDREGMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGAYRCKEDVSEF 2197 Query: 1601 CSKMQVFLSIANRQSFLLLQESISWILE 1684 SKMQ+FL++A Q F LLQE SWILE Sbjct: 2198 RSKMQIFLNVAISQKFQLLQECTSWILE 2225 >ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1| predicted protein [Populus trichocarpa] Length = 2221 Score = 796 bits (2055), Expect = 0.0 Identities = 392/566 (69%), Positives = 455/566 (80%), Gaps = 5/566 (0%) Frame = +2 Query: 2 TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181 TAD+FFSRAL DQQQVLWISDDG+PDLGG E+ TCF DEV QPVLTYPGAYRKV+VELK Sbjct: 1653 TADVFFSRALHDQQQVLWISDDGVPDLGGNHEESTCFADEVQQPVLTYPGAYRKVSVELK 1712 Query: 182 IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGP--HEQTGFDETRSCASAFRVLKQLIQ 355 IHHLAV+ALLKSNQ+NEMEGGAL GFDQD+N+ ++Q+GFDE S AS RVLKQLIQ Sbjct: 1713 IHHLAVDALLKSNQINEMEGGALLGFDQDMNSSTTLYDQSGFDEATSSASGLRVLKQLIQ 1772 Query: 356 RCLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLG 535 RCL DA+ GNVFADA+LQHLYRWLCSPQSKLHDP+LHR+LHKVMQKVFA+LLAELR+LG Sbjct: 1773 RCLADAVTSGNVFADAILQHLYRWLCSPQSKLHDPALHRILHKVMQKVFALLLAELRKLG 1832 Query: 536 ATIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQH 715 ATIIFA+FSKVIIDTGK +L+AA AYCD +LKTLQ+R+LFEWIELE FWHSLLFMDQ+ Sbjct: 1833 ATIIFANFSKVIIDTGKFELTAAKAYCDSVLKTLQNRELFEWIELEPLQFWHSLLFMDQY 1892 Query: 716 NYGGILAKADNLNSLD---ECANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKPW 886 NYGGI A+ D+ + D P+V+IVS+WNIAEYLP +DHFVLIVSEF+ PW Sbjct: 1893 NYGGIPARPDDSSHNDLHHHSPREEPKVDIVSNWNIAEYLPKKIQDHFVLIVSEFMFIPW 1952 Query: 887 QFAQKQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTIH 1066 +AQKQAA + RDG CTPSIT AAE FES + EY+KG+I ++FT+++L I RDT+ Sbjct: 1953 DYAQKQAATREALRDGNSCTPSITIVAAENFESHMVEYIKGQIGTHFTDKLLGIARDTVL 2012 Query: 1067 HVNGINKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKILL 1246 H+ GINKS+N + + H GD ALEFIK+VCAVL+LDQ+VQ ++LVMRK LL Sbjct: 2013 HMKGINKSENGQQISLGIQQPAGMNHKGDPALEFIKHVCAVLALDQHVQHEVLVMRKNLL 2072 Query: 1247 RFVRVREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCGQP 1426 ++VRVREF PE EF DPC SFILPNVICSYCN +EW CAVPQCGQP Sbjct: 2073 KYVRVREFAPEAEFHDPCPSFILPNVICSYCNDCRDLDLCRDSAVLAEEWRCAVPQCGQP 2132 Query: 1427 YDCEVMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEFCS 1606 YD EVMENAL QI RQRER+YHLQDLVCL+C QVK AHL+EQCSC GS+RC+EDVSEF Sbjct: 2133 YDREVMENALLQIVRQRERLYHLQDLVCLRCNQVKAAHLSEQCSCAGSYRCREDVSEFRR 2192 Query: 1607 KMQVFLSIANRQSFLLLQESISWILE 1684 KMQ+FL++A RQ F LLQE SWILE Sbjct: 2193 KMQIFLNVAIRQKFQLLQECTSWILE 2218 >ref|XP_002452153.1| hypothetical protein SORBIDRAFT_04g020730 [Sorghum bicolor] gi|241931984|gb|EES05129.1| hypothetical protein SORBIDRAFT_04g020730 [Sorghum bicolor] Length = 2135 Score = 760 bits (1963), Expect = 0.0 Identities = 373/562 (66%), Positives = 442/562 (78%), Gaps = 1/562 (0%) Frame = +2 Query: 2 TADIFFSRALRDQQQVLWISDDGIPDLGGISEDDTCFTDEVHQPVLTYPGAYRKVTVELK 181 TAD+FFSRALRDQQQVLWISDDGIPDLGG E +TCF DEV QP LTYPGAYR+V+VELK Sbjct: 1579 TADVFFSRALRDQQQVLWISDDGIPDLGGTYEGETCFADEVIQPALTYPGAYRRVSVELK 1638 Query: 182 IHHLAVNALLKSNQVNEMEGGALFGFDQDINAGPH-EQTGFDETRSCASAFRVLKQLIQR 358 IHHLAVNALLKS+QV+EMEGG++ F D+ GPH +T FD+ C AF+VLKQLIQR Sbjct: 1639 IHHLAVNALLKSSQVDEMEGGSIGSFGNDVPPGPHGTETDFDDASLCIPAFQVLKQLIQR 1698 Query: 359 CLQDAIKFGNVFADALLQHLYRWLCSPQSKLHDPSLHRVLHKVMQKVFAMLLAELRRLGA 538 C+ DA+ GNVFADA+LQHLYRWLCSP+SKLHDP+LHR+LH VM+KVFA+LLAE R+LGA Sbjct: 1699 CISDAVSSGNVFADAILQHLYRWLCSPRSKLHDPALHRLLHNVMKKVFALLLAEFRKLGA 1758 Query: 539 TIIFADFSKVIIDTGKSDLSAAHAYCDCLLKTLQSRDLFEWIELEAQHFWHSLLFMDQHN 718 +IFA+FSK+IIDTGK DLS+AHAYCD LLKTLQ+RDLFEWIELE HFWHSLLFMDQ+N Sbjct: 1759 NVIFANFSKIIIDTGKVDLSSAHAYCDSLLKTLQTRDLFEWIELEPLHFWHSLLFMDQYN 1818 Query: 719 YGGILAKADNLNSLDECANGVPEVNIVSSWNIAEYLPSVTRDHFVLIVSEFLHKPWQFAQ 898 YGGI AKA N++S D G +++IVSSWN+AE LP T+DHFVLIVSEFL+ PW+F + Sbjct: 1819 YGGIQAKAQNVDSSD----GDNDIDIVSSWNMAEDLPKDTQDHFVLIVSEFLYIPWKFMK 1874 Query: 899 KQAADSASFRDGTLCTPSITTAAAETFESCVTEYLKGEISSYFTERILKIVRDTIHHVNG 1078 +Q A A+ RD T CTPS+T AAE E V +L+ +IS+YF +++L+ V D +HH G Sbjct: 1875 EQVATQATIRDDTSCTPSVTVMAAENLEGQVIAHLRDKISNYFADKLLRTVSDILHHFKG 1934 Query: 1079 INKSKNDARAHVPKISSGSNIHLGDAALEFIKNVCAVLSLDQNVQDDILVMRKILLRFVR 1258 +K ++D A+ S + H GDAALEFIK+VCAVL+LDQNVQ DIL MRK LL+ VR Sbjct: 1935 KSKHESDEPANR---ESDPHTHKGDAALEFIKHVCAVLALDQNVQHDILRMRKNLLKLVR 1991 Query: 1259 VREFDPEVEFSDPCQSFILPNVICSYCNXXXXXXXXXXXXXXXQEWHCAVPQCGQPYDCE 1438 V+EF PE +F DPC SF LPNVICSYCN QEW CAVPQCGQPY E Sbjct: 1992 VKEFAPEAQFQDPCASFTLPNVICSYCNDCRDLDLCRDSTLQGQEWRCAVPQCGQPYHRE 2051 Query: 1439 VMENALFQISRQRERMYHLQDLVCLKCYQVKGAHLAEQCSCGGSFRCKEDVSEFCSKMQV 1618 MENAL Q+ RQRER+YHLQDLVC++C QVK AHL+EQCSCGGSFRCKE+ S F SKM+V Sbjct: 2052 QMENALLQVVRQRERLYHLQDLVCVRCRQVKAAHLSEQCSCGGSFRCKEESSYFLSKMRV 2111 Query: 1619 FLSIANRQSFLLLQESISWILE 1684 FL +A Q F LLQ+ + WILE Sbjct: 2112 FLKVAVNQKFQLLQDCVQWILE 2133