BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000669
         (550 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...    95   8e-18
emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]    95   8e-18
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...    60   3e-07
ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group] g...    56   3e-06

>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score = 94.7 bits (234), Expect = 8e-18
 Identities = 60/171 (35%), Positives = 82/171 (47%)
 Frame = +2

Query: 11  HKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSF 190
           H  D+   EKDFSL+VH I   D F  +   +      S   D+   S    + K     
Sbjct: 423 HSYDKDSIEKDFSLRVHGIKKADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVK----- 477

Query: 191 RYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN 370
                            N   S  +S+ +   +  S + SS+ Q SL+KFV+VNKRKHEN
Sbjct: 478 -------------GAVGNKGSSSHSSYIQSFGNKGSSSHSSYFQSSLSKFVTVNKRKHEN 524

Query: 371 SCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523
             TVLSE P+LRN+   CQ+++N   MHA VS S  +H   N S+ + E E
Sbjct: 525 ISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAGIIESE 575


>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score = 94.7 bits (234), Expect = 8e-18
 Identities = 60/171 (35%), Positives = 82/171 (47%)
 Frame = +2

Query: 11   HKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSF 190
            H  D+   EKDFSL+VH I   D F  +   +      S   D+   S    + K     
Sbjct: 3122 HSYDKDSIEKDFSLRVHGIKKADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVK----- 3176

Query: 191  RYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN 370
                             N   S  +S+ +   +  S + SS+ Q SL+KFV+VNKRKHEN
Sbjct: 3177 -------------GAVGNKGSSSHSSYIQSFGNKGSSSHSSYFQSSLSKFVTVNKRKHEN 3223

Query: 371  SCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523
              TVLSE P+LRN+   CQ+++N   MHA VS S  +H   N S+ + E E
Sbjct: 3224 ISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAGIIESE 3274


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
           predicted protein [Populus trichocarpa]
          Length = 915

 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 43/177 (24%), Positives = 77/177 (43%)
 Frame = +2

Query: 8   VHKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSS 187
           +H ++E    KDF+L++H I   D   +                N  ++  H        
Sbjct: 414 IHDIEEKFMMKDFALRLHGIKKTDSLTN---------------SNSCKATTHL------- 451

Query: 188 FRYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHE 367
                            D +A+ P     +       P+ S   Q  L+ F++VNKRK E
Sbjct: 452 -------------NIVTDQNAQCPSRVVERVKGDSNGPSGS--FQSKLSNFLTVNKRKRE 496

Query: 368 NSCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDETYECH 538
           +  T LSEVP+LRN+ S CQ++++ + +H  V+  + +H+ ++ S+   + E  + H
Sbjct: 497 DITTQLSEVPVLRNQTSECQLKKSDIDIHDAVTSLLFNHHHIDDSTEFTDAEPPKHH 553


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
           gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
           pms2, putative [Ricinus communis]
          Length = 924

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 1/169 (0%)
 Frame = +2

Query: 20  DESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSFRYI 199
           DE    KDF+L+VH I  V  F + +  QL T     + D    SP   + K        
Sbjct: 418 DEKRISKDFTLRVHDIPKVYSFPNSNNRQLTT-LHDTLTDQNTPSPSRVVAK-------- 468

Query: 200 PNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN-SC 376
                         N A S             S +SS  VQ +++KFV+V+KRKH++ S 
Sbjct: 469 --------------NIAESR-----------GSNSSSRSVQSTISKFVTVSKRKHDDIST 503

Query: 377 TVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523
           T LSE+PILRN+  +  + ++   ++A V+ S  +H+ ++ S  V++ E
Sbjct: 504 TTLSEIPILRNQTLQRPLNKSNSEVNAAVTGSPFNHHHIDDSLEVSDIE 552


>ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group]
           gi|50726475|dbj|BAD34084.1| putative PMS2 postmeiotic
           segregation increased 2 [Oryza sativa Japonica Group]
           gi|113536823|dbj|BAF09206.1| Os02g0592300 [Oryza sativa
           Japonica Group] gi|218191082|gb|EEC73509.1| hypothetical
           protein OsI_07875 [Oryza sativa Indica Group]
           gi|222623151|gb|EEE57283.1| hypothetical protein
           OsJ_07338 [Oryza sativa Japonica Group]
          Length = 923

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
 Frame = +2

Query: 98  PNQLKTPTASGMKDN----CARSPVHTIGK--LDSSFRY-----IPNRLKTSPPTATKDN 244
           P+ + T  A+G         +R P   + +  L S++RY      P R+K+ P  A   N
Sbjct: 404 PSSVTTRVATGSTPKDVSPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQA---N 460

Query: 245 SARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHENSCTVLSEVPILRNEASRC 424
             R+ L +           + SS VQ S+ KF+S NKRKHE+SC ++SE P+LR      
Sbjct: 461 HVRTGLAA---------KSSPSSAVQPSIMKFLSQNKRKHEDSCNLISEAPVLRRGTCLE 511

Query: 425 QMRENGLGMHAEVSESVADHNL--VNTSSAVN 514
           Q+R   LG+++  + +    N+  VN     N
Sbjct: 512 QVRRTDLGVNSPTALTSRVSNIPEVNAPQGTN 543