BLASTX nr result
ID: Coptis24_contig00000669
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000669 (550 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2... 95 8e-18 emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] 95 8e-18 ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2... 62 5e-08 ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [... 60 3e-07 ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group] g... 56 3e-06 >ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera] Length = 937 Score = 94.7 bits (234), Expect = 8e-18 Identities = 60/171 (35%), Positives = 82/171 (47%) Frame = +2 Query: 11 HKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSF 190 H D+ EKDFSL+VH I D F + + S D+ S + K Sbjct: 423 HSYDKDSIEKDFSLRVHGIKKADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVK----- 477 Query: 191 RYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN 370 N S +S+ + + S + SS+ Q SL+KFV+VNKRKHEN Sbjct: 478 -------------GAVGNKGSSSHSSYIQSFGNKGSSSHSSYFQSSLSKFVTVNKRKHEN 524 Query: 371 SCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523 TVLSE P+LRN+ CQ+++N MHA VS S +H N S+ + E E Sbjct: 525 ISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAGIIESE 575 >emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera] Length = 3804 Score = 94.7 bits (234), Expect = 8e-18 Identities = 60/171 (35%), Positives = 82/171 (47%) Frame = +2 Query: 11 HKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSF 190 H D+ EKDFSL+VH I D F + + S D+ S + K Sbjct: 3122 HSYDKDSIEKDFSLRVHGIKKADSFPKWDSEKTTMTINSDTIDHQVLSLSEMVVK----- 3176 Query: 191 RYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN 370 N S +S+ + + S + SS+ Q SL+KFV+VNKRKHEN Sbjct: 3177 -------------GAVGNKGSSSHSSYIQSFGNKGSSSHSSYFQSSLSKFVTVNKRKHEN 3223 Query: 371 SCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523 TVLSE P+LRN+ CQ+++N MHA VS S +H N S+ + E E Sbjct: 3224 ISTVLSEAPLLRNQTPNCQLKKNNSEMHALVSRSFVNHQKTNDSAGIIESE 3274 >ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1| predicted protein [Populus trichocarpa] Length = 915 Score = 62.4 bits (150), Expect = 5e-08 Identities = 43/177 (24%), Positives = 77/177 (43%) Frame = +2 Query: 8 VHKVDESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSS 187 +H ++E KDF+L++H I D + N ++ H Sbjct: 414 IHDIEEKFMMKDFALRLHGIKKTDSLTN---------------SNSCKATTHL------- 451 Query: 188 FRYIPNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHE 367 D +A+ P + P+ S Q L+ F++VNKRK E Sbjct: 452 -------------NIVTDQNAQCPSRVVERVKGDSNGPSGS--FQSKLSNFLTVNKRKRE 496 Query: 368 NSCTVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDETYECH 538 + T LSEVP+LRN+ S CQ++++ + +H V+ + +H+ ++ S+ + E + H Sbjct: 497 DITTQLSEVPVLRNQTSECQLKKSDIDIHDAVTSLLFNHHHIDDSTEFTDAEPPKHH 553 >ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis] gi|223537618|gb|EEF39241.1| DNA mismatch repair protein pms2, putative [Ricinus communis] Length = 924 Score = 59.7 bits (143), Expect = 3e-07 Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 1/169 (0%) Frame = +2 Query: 20 DESPTEKDFSLKVHTIGNVDGFFSYSPNQLKTPTASGMKDNCARSPVHTIGKLDSSFRYI 199 DE KDF+L+VH I V F + + QL T + D SP + K Sbjct: 418 DEKRISKDFTLRVHDIPKVYSFPNSNNRQLTT-LHDTLTDQNTPSPSRVVAK-------- 468 Query: 200 PNRLKTSPPTATKDNSARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHEN-SC 376 N A S S +SS VQ +++KFV+V+KRKH++ S Sbjct: 469 --------------NIAESR-----------GSNSSSRSVQSTISKFVTVSKRKHDDIST 503 Query: 377 TVLSEVPILRNEASRCQMRENGLGMHAEVSESVADHNLVNTSSAVNEDE 523 T LSE+PILRN+ + + ++ ++A V+ S +H+ ++ S V++ E Sbjct: 504 TTLSEIPILRNQTLQRPLNKSNSEVNAAVTGSPFNHHHIDDSLEVSDIE 552 >ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group] gi|50726475|dbj|BAD34084.1| putative PMS2 postmeiotic segregation increased 2 [Oryza sativa Japonica Group] gi|113536823|dbj|BAF09206.1| Os02g0592300 [Oryza sativa Japonica Group] gi|218191082|gb|EEC73509.1| hypothetical protein OsI_07875 [Oryza sativa Indica Group] gi|222623151|gb|EEE57283.1| hypothetical protein OsJ_07338 [Oryza sativa Japonica Group] Length = 923 Score = 56.2 bits (134), Expect = 3e-06 Identities = 47/152 (30%), Positives = 73/152 (48%), Gaps = 13/152 (8%) Frame = +2 Query: 98 PNQLKTPTASGMKDN----CARSPVHTIGK--LDSSFRY-----IPNRLKTSPPTATKDN 244 P+ + T A+G +R P + + L S++RY P R+K+ P A N Sbjct: 404 PSSVTTRVATGSTPKDVSPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQA---N 460 Query: 245 SARSPLTSFRKDDIHVQSPTSSSFVQLSLTKFVSVNKRKHENSCTVLSEVPILRNEASRC 424 R+ L + + SS VQ S+ KF+S NKRKHE+SC ++SE P+LR Sbjct: 461 HVRTGLAA---------KSSPSSAVQPSIMKFLSQNKRKHEDSCNLISEAPVLRRGTCLE 511 Query: 425 QMRENGLGMHAEVSESVADHNL--VNTSSAVN 514 Q+R LG+++ + + N+ VN N Sbjct: 512 QVRRTDLGVNSPTALTSRVSNIPEVNAPQGTN 543