BLASTX nr result
ID: Coptis24_contig00000605
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000605 (1177 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002319213.1| predicted protein [Populus trichocarpa] gi|2... 373 e-101 gb|AFK45366.1| unknown [Lotus japonicus] 370 e-100 ref|XP_002523967.1| 50S ribosomal protein L3, putative [Ricinus ... 370 e-100 ref|XP_002271466.1| PREDICTED: 50S ribosomal protein L3-1, chlor... 370 e-100 ref|XP_003522341.1| PREDICTED: 50S ribosomal protein L3-1, chlor... 369 e-100 >ref|XP_002319213.1| predicted protein [Populus trichocarpa] gi|222857589|gb|EEE95136.1| predicted protein [Populus trichocarpa] Length = 222 Score = 373 bits (958), Expect = e-101 Identities = 183/221 (82%), Positives = 198/221 (89%) Frame = +2 Query: 281 SMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVGYRRV 460 SMEAG+GVMGTKLGMMTYFE FREGNIVTQIKT+ATDGYD+VQVGYRRV Sbjct: 2 SMEAGVGVMGTKLGMMTYFEPNGKVVPVTVVGFREGNIVTQIKTDATDGYDAVQVGYRRV 61 Query: 461 RDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVSGTTI 640 RDKKLT PEMGHL K G IPMRHLQEFRL ++GFE Q+L+ +++FKEGDLVDVSGTTI Sbjct: 62 RDKKLTKPEMGHLEKAGVIPMRHLQEFRLQGLDGFEIGQKLLFEELFKEGDLVDVSGTTI 121 Query: 641 GKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 820 GKGFQGGIKR NFKRGPMSHGSKSHRA+GSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL Sbjct: 122 GKGFQGGIKRHNFKRGPMSHGSKSHRALGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 181 Query: 821 RIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 943 +IVKID DLR+VMI+GALPGKPGNLLRIAPAKIVGKNIPK+ Sbjct: 182 KIVKIDNDLRVVMIKGALPGKPGNLLRIAPAKIVGKNIPKS 222 >gb|AFK45366.1| unknown [Lotus japonicus] Length = 268 Score = 370 bits (951), Expect = e-100 Identities = 180/225 (80%), Positives = 198/225 (88%) Frame = +2 Query: 269 VTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVG 448 V SMEAG+GVMGTKLGMM+YFE F+EGNIVTQ+KTEATDGYD+VQVG Sbjct: 44 VVMMSMEAGVGVMGTKLGMMSYFEENGVVVPVTVVGFKEGNIVTQLKTEATDGYDAVQVG 103 Query: 449 YRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVS 628 Y+R+RD+KLT PE+GHL KVGAIPMRHLQEFRL S+EGF+ NQRLV ++FKEGDLVDVS Sbjct: 104 YQRIRDRKLTKPELGHLEKVGAIPMRHLQEFRLQSLEGFDLNQRLVFDELFKEGDLVDVS 163 Query: 629 GTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTK 808 GTTIGKGFQGGIKRWNFKRGPMSHG KSHR +GSIGAGTTPGRVY GKKMPGRMGGTK K Sbjct: 164 GTTIGKGFQGGIKRWNFKRGPMSHGFKSHRQLGSIGAGTTPGRVYPGKKMPGRMGGTKRK 223 Query: 809 IRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 943 IRKL+IVKID+DL +VMI+GALPGKPGNLLRI PAKIVGKNIPKN Sbjct: 224 IRKLKIVKIDKDLNVVMIKGALPGKPGNLLRITPAKIVGKNIPKN 268 >ref|XP_002523967.1| 50S ribosomal protein L3, putative [Ricinus communis] gi|223536694|gb|EEF38335.1| 50S ribosomal protein L3, putative [Ricinus communis] Length = 285 Score = 370 bits (951), Expect = e-100 Identities = 184/236 (77%), Positives = 203/236 (86%), Gaps = 1/236 (0%) Frame = +2 Query: 239 CSNPMRARRM-VTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTE 415 C+N + + + SMEAGIGVMGTKLGMM+YFE FREGNIVTQIKTE Sbjct: 50 CTNGTKTSGLSIVAMSMEAGIGVMGTKLGMMSYFESDGTVVPVTVVGFREGNIVTQIKTE 109 Query: 416 ATDGYDSVQVGYRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKD 595 ATDGYDSVQVGYRR+RD+KLT PE+GHL K G IPMRHLQEFRL +++GFE Q+LV+++ Sbjct: 110 ATDGYDSVQVGYRRIRDRKLTKPELGHLEKAGVIPMRHLQEFRLQNIDGFEVGQKLVLEE 169 Query: 596 IFKEGDLVDVSGTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKK 775 IFKEGDLVDVSG TIGKGFQGGIKR NFKRG M+HGSKSHRA+GSIGAGTTPGRVYKGKK Sbjct: 170 IFKEGDLVDVSGITIGKGFQGGIKRHNFKRGQMTHGSKSHRALGSIGAGTTPGRVYKGKK 229 Query: 776 MPGRMGGTKTKIRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 943 MPGRMGGTKTKIRKL+IVKID DLR VMI+GALPGKPGNLLRIAPAKIVGKNIPKN Sbjct: 230 MPGRMGGTKTKIRKLKIVKIDNDLRAVMIKGALPGKPGNLLRIAPAKIVGKNIPKN 285 >ref|XP_002271466.1| PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Vitis vinifera] Length = 281 Score = 370 bits (950), Expect = e-100 Identities = 179/225 (79%), Positives = 197/225 (87%) Frame = +2 Query: 269 VTHSSMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVG 448 + SMEAG+GVM TKLGMM+YFE FREGNIVTQ+KTEATDGY +VQVG Sbjct: 57 IIRMSMEAGVGVMATKLGMMSYFEPEGKVVPVTVVGFREGNIVTQVKTEATDGYSAVQVG 116 Query: 449 YRRVRDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVS 628 YRRVRD+KLT PEMGHL K G IPMRHLQEFRL SV+GFEPNQ+LV +++FKEGDLVDVS Sbjct: 117 YRRVRDRKLTKPEMGHLEKAGTIPMRHLQEFRLVSVDGFEPNQKLVFEELFKEGDLVDVS 176 Query: 629 GTTIGKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTK 808 G TIGKGFQGGIKR NF+RGPM+HGSKSHRA+GSIGAGTTPG VYKGKKMPGRMGGTKTK Sbjct: 177 GITIGKGFQGGIKRHNFRRGPMTHGSKSHRALGSIGAGTTPGHVYKGKKMPGRMGGTKTK 236 Query: 809 IRKLRIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 943 IRKL+IVKID DLR+VMI+GA+PGKPGNLLRI PAKIVGKNIPKN Sbjct: 237 IRKLKIVKIDNDLRVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 281 >ref|XP_003522341.1| PREDICTED: 50S ribosomal protein L3-1, chloroplastic-like [Glycine max] Length = 263 Score = 369 bits (948), Expect = e-100 Identities = 181/221 (81%), Positives = 198/221 (89%) Frame = +2 Query: 281 SMEAGIGVMGTKLGMMTYFEXXXXXXXXXXXXFREGNIVTQIKTEATDGYDSVQVGYRRV 460 SMEAGIGVMGTKLGMM+YFE F+EGNIVTQIKTEATDGYD+VQVGYRRV Sbjct: 43 SMEAGIGVMGTKLGMMSYFESDGEVVPVTVVGFKEGNIVTQIKTEATDGYDAVQVGYRRV 102 Query: 461 RDKKLTMPEMGHLNKVGAIPMRHLQEFRLTSVEGFEPNQRLVVKDIFKEGDLVDVSGTTI 640 RD+KLT PE+GHL KVGAIPMRHLQEFRL +++GF+ NQRLV +IFKEGDLVDVSGTTI Sbjct: 103 RDRKLTKPEIGHLQKVGAIPMRHLQEFRLQAIDGFDLNQRLVFDEIFKEGDLVDVSGTTI 162 Query: 641 GKGFQGGIKRWNFKRGPMSHGSKSHRAIGSIGAGTTPGRVYKGKKMPGRMGGTKTKIRKL 820 GKGFQGGIKR NFKRGPM+HGSKSHR +GSIGAGTTPGRVYKGKKMPGRMGGTK KIRKL Sbjct: 163 GKGFQGGIKRHNFKRGPMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKL 222 Query: 821 RIVKIDEDLRIVMIQGALPGKPGNLLRIAPAKIVGKNIPKN 943 +IVKID+DL +VMI+GA+PGKPGNLLRI PAKIVGKNIPKN Sbjct: 223 KIVKIDKDLNVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN 263