BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000510
         (951 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/ox...   167   2e-56
dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ...   166   2e-55
gb|ABK15574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s...   163   3e-54
gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/o...   172   4e-54
sp|Q40250.1|RBS_LACSA RecName: Full=Ribulose bisphosphate carbox...   169   1e-53

>gb|AFO67218.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small
           subunit [Aralia elata]
          Length = 183

 Score =  167 bits (423), Expect(2) = 2e-56
 Identities = 82/110 (74%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
 Frame = +1

Query: 184 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLASNGGRVHCMEVWPI 363
           I SA++A+V+R  PAQASMVAPFTGLKSTAAFPVTRK+N DITSL SNGGRV CM+VWP 
Sbjct: 6   ISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPP 64

Query: 364 IGLKKFETLSYLPPLSQASLAKEVDYLIRNGWIPCLEFSLE-GYITRQYH 510
           +GLKKFETLSYLPPL+   LAKEVDYL+R+GW+PCLEF LE G++ R+ H
Sbjct: 65  LGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENH 114



 Score = 79.0 bits (193), Expect(2) = 2e-56
 Identities = 37/39 (94%), Positives = 37/39 (94%)
 Frame = +2

Query: 632 QVLNEVEECKKEYPKAFIRIIGFDNKRQVQCISFIAFKP 748
           QVLNEVEECKKEYP AFIRIIGFDN RQVQCISFIAFKP
Sbjct: 140 QVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKP 178


>dbj|BAE46384.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Panax ginseng]
          Length = 183

 Score =  166 bits (421), Expect(2) = 2e-55
 Identities = 81/110 (73%), Positives = 96/110 (87%), Gaps = 1/110 (0%)
 Frame = +1

Query: 184 IPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLASNGGRVHCMEVWPI 363
           I SA +A+V+R  PAQASMVAPFTGLKSTAAFPVTRK+N DITSL SNGGRV CM+VWP 
Sbjct: 6   ISSATVAAVSRAVPAQASMVAPFTGLKSTAAFPVTRKVN-DITSLPSNGGRVQCMKVWPP 64

Query: 364 IGLKKFETLSYLPPLSQASLAKEVDYLIRNGWIPCLEFSLE-GYITRQYH 510
           +GLKKFETLSYLP L+Q  L+KEVDYL+R+GW+PCLEF LE G++ R++H
Sbjct: 65  LGLKKFETLSYLPQLTQEQLSKEVDYLLRSGWVPCLEFELEHGFVYREHH 114



 Score = 76.6 bits (187), Expect(2) = 2e-55
 Identities = 36/42 (85%), Positives = 37/42 (88%)
 Frame = +2

Query: 632 QVLNEVEECKKEYPKAFIRIIGFDNKRQVQCISFIAFKPADA 757
           QVL EVEECKKEYP A+IRIIGFDN RQVQCISFIAFKP  A
Sbjct: 140 QVLKEVEECKKEYPNAYIRIIGFDNVRQVQCISFIAFKPPSA 181


>gb|ABK15574.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Camellia sinensis]
          Length = 176

 Score =  163 bits (412), Expect(2) = 3e-54
 Identities = 80/107 (74%), Positives = 90/107 (84%)
 Frame = +1

Query: 190 SAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLASNGGRVHCMEVWPIIG 369
           +A+I S   V PAQASM APFTGLKST+AFPVTRKL+ DITSLASNGGRV CM+VWP +G
Sbjct: 2   AASIISSAVVAPAQASMAAPFTGLKSTSAFPVTRKLDTDITSLASNGGRVQCMKVWPPLG 61

Query: 370 LKKFETLSYLPPLSQASLAKEVDYLIRNGWIPCLEFSLEGYITRQYH 510
           LKKFETLSYLPPL+QA L KEVDYLIR GWIPCLEFS++G    + H
Sbjct: 62  LKKFETLSYLPPLTQAQLGKEVDYLIRLGWIPCLEFSVQGGFVYREH 108



 Score = 75.9 bits (185), Expect(2) = 3e-54
 Identities = 34/39 (87%), Positives = 37/39 (94%)
 Frame = +2

Query: 632 QVLNEVEECKKEYPKAFIRIIGFDNKRQVQCISFIAFKP 748
           QVL EVEECKKEYP++FIRIIGFDNKRQVQCISFI +KP
Sbjct: 135 QVLKEVEECKKEYPQSFIRIIGFDNKRQVQCISFICYKP 173


>gb|AAF19793.1|AF162210_1 ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
           [Lactuca sativa]
          Length = 181

 Score =  172 bits (436), Expect(2) = 4e-54
 Identities = 81/113 (71%), Positives = 97/113 (85%), Gaps = 1/113 (0%)
 Frame = +1

Query: 175 MASIPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLASNGGRVHCMEV 354
           MASI S+A+A+VNR TPAQAS+ APFTGLKS  AFPVT+K NND +SL SNGGRV CM+V
Sbjct: 1   MASISSSAVATVNRSTPAQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKV 60

Query: 355 WPIIGLKKFETLSYLPPLSQASLAKEVDYLIRNGWIPCLEFSLE-GYITRQYH 510
           WP IGLKK+ETLSYLPPLS  +L+KE+DYLIRN W+PCLEF LE G++ R++H
Sbjct: 61  WPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVYREHH 113



 Score = 66.2 bits (160), Expect(2) = 4e-54
 Identities = 30/39 (76%), Positives = 33/39 (84%)
 Frame = +2

Query: 632 QVLNEVEECKKEYPKAFIRIIGFDNKRQVQCISFIAFKP 748
           QV+ EV ECKKEYP AFIR+IGFD+ RQVQCISFI  KP
Sbjct: 139 QVMKEVGECKKEYPNAFIRVIGFDSVRQVQCISFIVSKP 177


>sp|Q40250.1|RBS_LACSA RecName: Full=Ribulose bisphosphate carboxylase small chain,
           chloroplastic; Short=RuBisCO small subunit; Flags:
           Precursor gi|217946|dbj|BAA03103.1|
           riburose-1,5-bisphosphate carboxylase/oxygenase small
           subunit precursor [Lactuca sativa]
          Length = 181

 Score =  169 bits (428), Expect(2) = 1e-53
 Identities = 81/113 (71%), Positives = 95/113 (84%), Gaps = 1/113 (0%)
 Frame = +1

Query: 175 MASIPSAAIASVNRVTPAQASMVAPFTGLKSTAAFPVTRKLNNDITSLASNGGRVHCMEV 354
           MASI S+AIA+VNR T  QAS+ APFTGLKS  AFPVT+K NND +SL SNGGRV CM+V
Sbjct: 1   MASISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKV 60

Query: 355 WPIIGLKKFETLSYLPPLSQASLAKEVDYLIRNGWIPCLEFSLE-GYITRQYH 510
           WP IGLKK+ETLSYLPPLS  +L+KE+DYLIRN WIPCLEF LE G++ R++H
Sbjct: 61  WPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHH 113



 Score = 67.8 bits (164), Expect(2) = 1e-53
 Identities = 31/39 (79%), Positives = 33/39 (84%)
 Frame = +2

Query: 632 QVLNEVEECKKEYPKAFIRIIGFDNKRQVQCISFIAFKP 748
           QV+ EV ECKKEYP AFIR+IGFDN RQVQCISFI  KP
Sbjct: 139 QVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177