BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000506
         (4080 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containi...   613   e-172
ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containi...   608   e-171
ref|XP_002522032.1| pentatricopeptide repeat-containing protein,...   571   e-160
ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|2...   566   e-158
ref|XP_002871814.1| pentatricopeptide repeat-containing protein ...   565   e-158

>ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial [Vitis vinifera]
            gi|296085168|emb|CBI28663.3| unnamed protein product
            [Vitis vinifera]
          Length = 454

 Score =  613 bits (1580), Expect = e-172
 Identities = 298/448 (66%), Positives = 360/448 (80%), Gaps = 1/448 (0%)
 Frame = +1

Query: 2632 SNPNPNFKFLKTLTTQSHQIPPTAQKHSREGVSNDDYFAAIHHISNIVRRDFYMERTLQK 2811
            S  +P    LKTLTT +  +  T           DDYFA +HHIS IVRRDFY+ERTL K
Sbjct: 16   SPASPILTHLKTLTTITTHLQNTITS------KKDDYFAVVHHISAIVRRDFYLERTLNK 69

Query: 2812 MQINMTSELVYRVLRSCNKSGINSFRFFNWARNQPRYEPTTLEFEELIKILGKNKNWETM 2991
            + I++TS+LVYRVLRSC  SG  S RFFNWAR+   Y+PTTLE+EEL+K L + K ++ M
Sbjct: 70   LPISVTSDLVYRVLRSCPNSGTESLRFFNWARSHLSYQPTTLEYEELLKTLARTKQFQPM 129

Query: 2992 WKVAEQMKKMGFVLTPDTFSMIIESYGKNGLVDKAVEVFNRMKN-FNCEQTIGVYNSLLF 3168
            WK+A QM+     L+P   S IIE +GK+GLVD+AVEVFN+ K+  NC QTI VYNSLLF
Sbjct: 130  WKIAHQMQ----TLSPTVVSSIIEEFGKHGLVDQAVEVFNKAKSALNCPQTIEVYNSLLF 185

Query: 3169 ALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVNGWCSAGKLKEAQDFLEEMSRKGFNP 3348
            ALCEVK F GAYALIRR+IRKG  P+K+TYS+LVNGWC+AGK+KEAQDFLEEMSRKGFNP
Sbjct: 186  ALCEVKYFHGAYALIRRMIRKGVTPNKQTYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNP 245

Query: 3349 PVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLPDITTFNSLLEAICEGGEVEFCVGLF 3528
            PVRGRDLL+DGLL+AGYLEAAK +VRKMTKEG  PD+ T NS+LEAIC+ GE EFC+ ++
Sbjct: 246  PVRGRDLLVDGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIY 305

Query: 3529 RDVCKLGLHPDISTYKVMIPAVSKLGRMDEAFRFLYCSIEDGHKPFPSLYAPILKGLCRV 3708
             DVC+LG+ P++ TYK+MIPA  K GR+DEAFR L+ SIEDGH+PFPSLYAPI+K LCR 
Sbjct: 306  NDVCRLGVSPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRN 365

Query: 3709 GQFDDAFNFFSNMKAQGHPPNRPVYIMLIKMCARGGRFVEAANYLMEMIEMKLSPKPQSF 3888
            GQFDDAF FFS+MK +GHPPNRPVY MLI MC RGGRFV+AANYL+EM E+ L+P  + F
Sbjct: 366  GQFDDAFCFFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCF 425

Query: 3889 DLITDGLKHFGKHDLAKRIEQVEISLRG 3972
            D++TDGLK+ GKHDLA++IEQ+E+SLRG
Sbjct: 426  DMVTDGLKNCGKHDLARKIEQLEVSLRG 453


>ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
            gi|449518358|ref|XP_004166209.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g18390,
            mitochondrial-like [Cucumis sativus]
          Length = 455

 Score =  608 bits (1567), Expect = e-171
 Identities = 288/418 (68%), Positives = 349/418 (83%), Gaps = 3/418 (0%)
 Frame = +1

Query: 2728 SNDDYFAAIHHISNIVRRDFYMERTLQKMQI-NMTSELVYRVLRSCNKSGINSFRFFNWA 2904
            S DDYFAAIHHIS+IVRRDFYMERTL K++I N+ SELV+RVLR+C+ SG  SFRFFNWA
Sbjct: 37   SKDDYFAAIHHISHIVRRDFYMERTLNKLRISNLNSELVFRVLRACSNSGTESFRFFNWA 96

Query: 2905 -RNQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSMIIESYGKNG 3081
              + P Y+PTTLEFEEL+K L + + + TMWKV  QMK     ++P+T S II+ YGK G
Sbjct: 97   CSHNPSYQPTTLEFEELVKTLARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQG 156

Query: 3082 LVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTY 3258
            LVD AV +FN+  K+ +C QT+ VYN+LLFALCEVK F GAYALIRR+IRKG  PDK+TY
Sbjct: 157  LVDNAVTIFNQCSKSIDCPQTVEVYNALLFALCEVKMFHGAYALIRRMIRKGVTPDKKTY 216

Query: 3259 SILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTK 3438
              LV GWCSAGK+KEAQ+FLEEMS+KGFNPP+RGRDLL++GLL+AGYLE+AK +VRKMTK
Sbjct: 217  GTLVTGWCSAGKMKEAQEFLEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTK 276

Query: 3439 EGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDE 3618
            EG +PDI TFNSL++ IC  GEV+FC+ +F +VCKLGL PDI+TYK++IPA SK+GR+DE
Sbjct: 277  EGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCKLGLCPDINTYKILIPATSKVGRIDE 336

Query: 3619 AFRFLYCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIK 3798
            AFR L+C IEDGH PFPSLY PILKG+C+ GQFDDAF FF +MK +GHPPNRPVY MLI 
Sbjct: 337  AFRLLHCCIEDGHVPFPSLYGPILKGMCKRGQFDDAFCFFGDMKHKGHPPNRPVYTMLIT 396

Query: 3799 MCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 3972
            MC RGGRFV+AANYLMEM E+ L P  + FD++TDGLK+ GKHDLAK+IEQ+E+S+RG
Sbjct: 397  MCGRGGRFVDAANYLMEMAELGLPPISRCFDMVTDGLKNCGKHDLAKKIEQLEVSIRG 454


>ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223538836|gb|EEF40436.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 451

 Score =  571 bits (1472), Expect = e-160
 Identities = 273/415 (65%), Positives = 338/415 (81%), Gaps = 2/415 (0%)
 Frame = +1

Query: 2728 SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 2907
            + D YFA IHHI+NIVRRDFY ERTL K+   +TSELV+RVLR+C++S   S RFFNW+R
Sbjct: 36   TKDAYFALIHHITNIVRRDFYPERTLNKLNAPVTSELVFRVLRACSRSPTESLRFFNWSR 95

Query: 2908 NQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMG--FVLTPDTFSMIIESYGKNG 3081
                Y PT++E+EELIKIL K+K + +MWK+  QMK     F ++ +T   IIE YG++G
Sbjct: 96   AY--YTPTSIEYEELIKILAKSKRYSSMWKLITQMKDQNPQFSISSETVRSIIEEYGRSG 153

Query: 3082 LVDKAVEVFNRMKNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYS 3261
            L+D+AVEVFN+  + NCEQ + +YNSLLFALCEVK F GAYAL+RRLIRKG  P+K TYS
Sbjct: 154  LIDQAVEVFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLIRKGLAPNKTTYS 213

Query: 3262 ILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKE 3441
            +LVNGWCS GK KEAQ FLEEMS+KGFNPPVRGRDLLI+GLL+AGY E+AK +V KM+KE
Sbjct: 214  VLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKMSKE 273

Query: 3442 GFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDEA 3621
            GF+PD+ TFN L+EAIC  GEV+FCV ++  + KLG  PDI++YK++IPAVSK+G++DEA
Sbjct: 274  GFVPDVNTFNCLIEAICNSGEVDFCVDMYYSLRKLGFCPDINSYKILIPAVSKVGKIDEA 333

Query: 3622 FRFLYCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIKM 3801
            F+ L  SIEDGHKPFP LYAPI+KG+CR GQFDDAF FF  MK +GHPPNRPVY MLI M
Sbjct: 334  FKLLNNSIEDGHKPFPGLYAPIIKGMCRRGQFDDAFCFFGEMKVKGHPPNRPVYTMLITM 393

Query: 3802 CARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISL 3966
            C RGG++VEAANYL+EM EM L+P  + FD++TDGLK+ GKHDLAKRIEQ+E+S+
Sbjct: 394  CGRGGKYVEAANYLVEMTEMGLTPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSV 448


>ref|XP_002325369.1| predicted protein [Populus trichocarpa] gi|222862244|gb|EEE99750.1|
            predicted protein [Populus trichocarpa]
          Length = 422

 Score =  567 bits (1460), Expect = e-158
 Identities = 273/419 (65%), Positives = 344/419 (82%), Gaps = 4/419 (0%)
 Frame = +1

Query: 2728 SNDDYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWAR 2907
            + D YF+ IH+I+NI+R++ Y ERTL K+ + +TSELV+RVLR+C+ S   S RFFNWAR
Sbjct: 6    NRDAYFSLIHNITNIIRKEVYPERTLNKLNLPITSELVFRVLRACSNSPSESLRFFNWAR 65

Query: 2908 NQPRYEPTTLEFEELIKILGKNKNWETMWKVAEQMK-KMG--FVLTPDTFSMIIESYGKN 3078
            +   Y PTT+E+EELI  L +NK + +MWK+  Q+K  +G  F ++ DT   IIE YGK+
Sbjct: 66   SY--YSPTTIEYEELIITLVRNKKYASMWKLIAQVKDNLGDKFSVSSDTVCSIIEEYGKH 123

Query: 3079 GLVDKAVEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRT 3255
            GL+D+AVEVFN+  ++ NC+  + VYNSLLFALCEVK F GAYAL+RR+IRKG VPDKRT
Sbjct: 124  GLIDQAVEVFNKCSRSLNCQHNVCVYNSLLFALCEVKMFHGAYALVRRMIRKGIVPDKRT 183

Query: 3256 YSILVNGWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMT 3435
            Y +LVNGWCS+GKL+EA+ FLEEMS+KGFNPPVRGRDLLI+GLL+AGYLE+AK +VR+M 
Sbjct: 184  YGVLVNGWCSSGKLREAKGFLEEMSKKGFNPPVRGRDLLIEGLLNAGYLESAKDMVRRMM 243

Query: 3436 KEGFLPDITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMD 3615
            KEG +PD+ TFNS++EAIC  GEV+FCV ++  VCKLG  PDI++YK++IPAVSK+GR+D
Sbjct: 244  KEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHSVCKLGFCPDINSYKILIPAVSKVGRID 303

Query: 3616 EAFRFLYCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLI 3795
            EAFR L+  IEDGHKPFPSLYAPI+KG+ R GQFDDAF FFS MK +GHPPNRPVY M+I
Sbjct: 304  EAFRLLHNLIEDGHKPFPSLYAPIIKGMFRRGQFDDAFCFFSEMKVKGHPPNRPVYTMMI 363

Query: 3796 KMCARGGRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 3972
             MC RGG+ VEAANYL+EM E+ L P  + FD++TDGLK+ GKHDLAKRIEQ+E+SLRG
Sbjct: 364  TMCGRGGKHVEAANYLVEMTEIGLVPISRCFDMVTDGLKNCGKHDLAKRIEQLEVSLRG 422


>ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297317651|gb|EFH48073.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 459

 Score =  565 bits (1455), Expect = e-158
 Identities = 268/413 (64%), Positives = 337/413 (81%), Gaps = 1/413 (0%)
 Frame = +1

Query: 2737 DYFAAIHHISNIVRRDFYMERTLQKMQINMTSELVYRVLRSCNKSGINSFRFFNWARNQP 2916
            DYFAAI+H+ NIVRR+ + ER+L  +++ +TSE V+RVLR+ ++S  +S RFFNWAR+ P
Sbjct: 46   DYFAAINHVVNIVRREIHPERSLNSLRLPVTSEFVFRVLRATSRSANDSLRFFNWARSNP 105

Query: 2917 RYEPTTLEFEELIKILGKNKNWETMWKVAEQMKKMGFVLTPDTFSMIIESYGKNGLVDKA 3096
             Y PT++E+EEL K L  +K +E+MWK+ +QMK +   ++ +T   IIE YGKNG VD+A
Sbjct: 106  SYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQA 165

Query: 3097 VEVFNRM-KNFNCEQTIGVYNSLLFALCEVKNFQGAYALIRRLIRKGGVPDKRTYSILVN 3273
            VE+FN + K   C+QT+ VYN+LL ALC+VK F GAYALIRR+IRKG  PDKRTY+ILVN
Sbjct: 166  VELFNGVPKTLGCQQTVDVYNALLHALCDVKMFHGAYALIRRMIRKGLKPDKRTYAILVN 225

Query: 3274 GWCSAGKLKEAQDFLEEMSRKGFNPPVRGRDLLIDGLLSAGYLEAAKGLVRKMTKEGFLP 3453
            GWCSAGK+KEAQ+FL+EMSRKGFNPP RGRDLLI+GLL+AGYLE+AK +V KMTK GF+P
Sbjct: 226  GWCSAGKMKEAQEFLDEMSRKGFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVP 285

Query: 3454 DITTFNSLLEAICEGGEVEFCVGLFRDVCKLGLHPDISTYKVMIPAVSKLGRMDEAFRFL 3633
            DI TFN+L+EAI + GEVEFC+ ++   CKLGL  DI TYK +IPAVSK+G++DEAFR L
Sbjct: 286  DILTFNTLIEAISKSGEVEFCIEMYYTACKLGLCVDIDTYKTLIPAVSKIGKIDEAFRLL 345

Query: 3634 YCSIEDGHKPFPSLYAPILKGLCRVGQFDDAFNFFSNMKAQGHPPNRPVYIMLIKMCARG 3813
               +EDGHKPFPSLYAPI+KG+CR G FDDAF+FFS+MK + HPPNRPVY MLI MC RG
Sbjct: 346  NNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSFFSDMKVKAHPPNRPVYTMLITMCGRG 405

Query: 3814 GRFVEAANYLMEMIEMKLSPKPQSFDLITDGLKHFGKHDLAKRIEQVEISLRG 3972
            G+FV+AANYL+EM EM L P  + FD++TDGLK+ GKHDLA RIEQ+E+ LRG
Sbjct: 406  GKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKNSGKHDLAMRIEQLEVQLRG 458