BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000480
         (2039 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vin...   368   4e-99
emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera]   357   7e-96
ref|XP_002319865.1| predicted protein [Populus trichocarpa] gi|2...   355   2e-95
ref|XP_002510776.1| RNA-binding region-containing protein, putat...   354   4e-95
tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea m...   315   9e-89

>ref|XP_002266779.1| PREDICTED: RNA-binding protein 38 [Vitis vinifera]
            gi|297734754|emb|CBI16988.3| unnamed protein product
            [Vitis vinifera]
          Length = 264

 Score =  368 bits (944), Expect = 4e-99
 Identities = 186/269 (69%), Positives = 205/269 (76%), Gaps = 3/269 (1%)
 Frame = +1

Query: 250  MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 429
            MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1    MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60

Query: 430  FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 609
            FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF + 
Sbjct: 61   FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT- 119

Query: 610  XXXXXXXXXSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXXNVYGGGAATQY 789
                        F SAATFPHYAIQQGIPYN+                 +VY GGAA QY
Sbjct: 120  ---GFQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVY-GGAAAQY 175

Query: 790  PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGYSLQYPHHLYPYSTINST 963
            P+YG G  GMMTGA AA+YPYLQFG+G+GG  ++  YT+GQGY +QYPHHL  YS INST
Sbjct: 176  PVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGYGVQYPHHLVQYSAINST 235

Query: 964  GFTP-HYGGPMSLGPTAPTQAVCFTLQQA 1047
            G  P HYG PMSL PT   Q+VCF + QA
Sbjct: 236  GGYPQHYGAPMSLAPTPALQSVCFAVPQA 264


>emb|CAN73746.1| hypothetical protein VITISV_041364 [Vitis vinifera]
          Length = 269

 Score =  357 bits (916), Expect = 7e-96
 Identities = 181/261 (69%), Positives = 199/261 (76%), Gaps = 3/261 (1%)
 Frame = +1

Query: 250  MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 429
            MTPANLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1    MTPANLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKTTGRSKGYG 60

Query: 430  FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 609
            FVTFRE +AAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK GG RNFRVM SF + 
Sbjct: 61   FVTFREPDAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGRNFRVMGSFQT- 119

Query: 610  XXXXXXXXXSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXXNVYGGGAATQY 789
                        F SAATFPHYAIQQGIPYN+                 +VY GGAA QY
Sbjct: 120  ---GFQGGVGTAFPSAATFPHYAIQQGIPYNLYGYSPYSPDYTYPTSYYSVY-GGAAAQY 175

Query: 790  PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSA--YTTGQGYSLQYPHHLYPYSTINST 963
            P+YG G  GMMTGA AA+YPYLQFG+G+GG  ++  YT+GQGY +QYPHHL  YS INST
Sbjct: 176  PVYGAGPGGMMTGAGAAFYPYLQFGEGSGGAAASGGYTSGQGYGVQYPHHLVQYSAINST 235

Query: 964  GFTP-HYGGPMSLGPTAPTQA 1023
            G  P HYG PMSL PT   Q+
Sbjct: 236  GGYPQHYGAPMSLAPTPALQS 256


>ref|XP_002319865.1| predicted protein [Populus trichocarpa] gi|222858241|gb|EEE95788.1|
            predicted protein [Populus trichocarpa]
          Length = 266

 Score =  355 bits (912), Expect = 2e-95
 Identities = 181/271 (66%), Positives = 203/271 (74%), Gaps = 5/271 (1%)
 Frame = +1

Query: 250  MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 429
            MTP+NLA QFGDTTYTKVFVGGLAWETQ+ETM+KYFEQFGEILEAVVI DK TGRSKGYG
Sbjct: 1    MTPSNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVIADKATGRSKGYG 60

Query: 430  FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGA-RNFRVMNSFHS 606
            FVTFRE +AAMRACVD SPVIDGRRANCNLASLGVQ+S+P TPK G A RNFRVM+SF +
Sbjct: 61   FVTFREPDAAMRACVDASPVIDGRRANCNLASLGVQRSKPSTPKHGAAGRNFRVMSSFQT 120

Query: 607  TXXXXXXXXXSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXXNVYGGGAATQ 786
                         F SAA+FPHYAIQQGIPYNV                 N+Y GGA  Q
Sbjct: 121  ----GFGGGVGTAFPSAASFPHYAIQQGIPYNVYGYSSYSPDYTYPASYYNMY-GGATAQ 175

Query: 787  YPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAY--TTGQGYSLQYPHHLYPYSTINS 960
            YPMYG G  GMM GA AA+YPYLQFG+G+ G  ++Y  T+GQ Y +QYPHHL+ YS+INS
Sbjct: 176  YPMYGSGHGGMMNGAAAAFYPYLQFGEGSTGGATSYSNTSGQSYGVQYPHHLFQYSSINS 235

Query: 961  T--GFTPHYGGPMSLGPTAPTQAVCFTLQQA 1047
            T  G+  HYG PMSL PTA   +VCF + QA
Sbjct: 236  TTGGYPQHYGAPMSLAPTAALPSVCFAVPQA 266


>ref|XP_002510776.1| RNA-binding region-containing protein, putative [Ricinus communis]
            gi|223551477|gb|EEF52963.1| RNA-binding region-containing
            protein, putative [Ricinus communis]
          Length = 259

 Score =  354 bits (909), Expect = 4e-95
 Identities = 179/269 (66%), Positives = 206/269 (76%), Gaps = 3/269 (1%)
 Frame = +1

Query: 250  MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 429
            MTP+NLA QFGDTTYTKVFVGGLAWETQ++TM+KYFEQFGEILEAVVITDK TGRSKGYG
Sbjct: 1    MTPSNLAGQFGDTTYTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYG 60

Query: 430  FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQ--GGARNFRVMNSFH 603
            FVTFR+ EAAMRACVD +PVIDGRRANCNLASLGVQ+S+P TPK   GG RN RV++SF 
Sbjct: 61   FVTFRDPEAAMRACVDSAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNLRVISSFQ 120

Query: 604  STXXXXXXXXXSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXXNVYGGGAAT 783
            +             F SAA+FPHYAIQQGIPYNV                 NVY GGA  
Sbjct: 121  T--------GFGTAFPSAASFPHYAIQQGIPYNVYGYSPYSPEYTYPTSYYNVY-GGATA 171

Query: 784  QYPMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSLQYPHHLYPYSTINST 963
            QYPMYG G +GMM+GA AA+YPYLQFG+G+GG TS Y++ Q Y++QYPHHL+ YS +NST
Sbjct: 172  QYPMYGTGHSGMMSGAAAAFYPYLQFGEGSGGATS-YSSSQNYNVQYPHHLFQYSAVNST 230

Query: 964  GFTP-HYGGPMSLGPTAPTQAVCFTLQQA 1047
            G  P H+G P+SL PTA  Q+VCF + QA
Sbjct: 231  GGYPQHFGAPLSLAPTASLQSVCFAVPQA 259


>tpg|DAA56565.1| TPA: hypothetical protein ZEAMMB73_877814 [Zea mays]
          Length = 295

 Score =  315 bits (807), Expect(2) = 9e-89
 Identities = 162/263 (61%), Positives = 191/263 (72%), Gaps = 5/263 (1%)
 Frame = +1

Query: 250  MTPANLASQFGDTTYTKVFVGGLAWETQRETMRKYFEQFGEILEAVVITDKNTGRSKGYG 429
            M+P ++  QFGDTTYTKVFVGGLAWETQ+ETMRKYFEQFGEILEAVVITDKNTGRSKGYG
Sbjct: 1    MSPPSVMGQFGDTTYTKVFVGGLAWETQKETMRKYFEQFGEILEAVVITDKNTGRSKGYG 60

Query: 430  FVTFREQEAAMRACVDPSPVIDGRRANCNLASLGVQKSRPGTPKQGGARNFRVMNSFHST 609
            FVTFR+ +AAMRACVDP+PVIDGRRANCNLASLGVQ+SRP TP+ GGARNFRVM SF+  
Sbjct: 61   FVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARNFRVMKSFNQ- 119

Query: 610  XXXXXXXXXSATFASAATFPHYAIQQGIPYNVXXXXXXXXXXXXXXXXXNVYGGGAATQY 789
                      A F S ATFPHYAI QG+P++V                 N+YGG    QY
Sbjct: 120  -QAGIQGGLGAAFPSHATFPHYAIPQGLPFHVYGYSPYTPDYGYPTNFYNIYGG---AQY 175

Query: 790  PMYGGGSNGMMTGATAAYYPYLQFGQGNGGNTSAYTTGQGYSLQYPHHLYPYSTINS--- 960
            P YGG + GM+TG T+ +YPY QFGQ +G  T+ YT+GQGY+LQ    ++ +ST++S   
Sbjct: 176  PFYGGATAGMVTG-TSPFYPYFQFGQ-SGNTTTNYTSGQGYNLQQYPQMFHFSTVSSTAA 233

Query: 961  --TGFTPHYGGPMSLGPTAPTQA 1023
              TGF   YGGP+SL  +   QA
Sbjct: 234  AVTGFAQQYGGPLSLAASPQAQA 256



 Score = 40.8 bits (94), Expect(2) = 9e-89
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 6/39 (15%)
 Frame = +3

Query: 1044 GVTMALTTPTVPVP-----PYRIIPTHFTPTLS-EQPSA 1142
            G+TMALT PT+P P     PYR+IP+HF  + + EQP A
Sbjct: 257  GMTMALTAPTLPTPTQAAHPYRLIPSHFAVSAAPEQPLA 295