BLASTX nr result

ID: Coptis24_contig00000475 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000475
         (1711 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI34644.3| unnamed protein product [Vitis vinifera]              212   3e-52
gb|AER42647.1| GTL1 [Populus tremula x Populus alba]                  202   3e-49
ref|XP_002317033.1| predicted protein [Populus trichocarpa] gi|2...   201   6e-49
ref|XP_002300534.1| predicted protein [Populus trichocarpa] gi|2...   199   2e-48
ref|XP_002518968.1| transcription factor, putative [Ricinus comm...   192   3e-46

>emb|CBI34644.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  212 bits (539), Expect = 3e-52
 Identities = 104/160 (65%), Positives = 121/160 (75%), Gaps = 4/160 (2%)
 Frame = -2

Query: 1656 VLAAVPEQQHPPQEMVGGSGTSFDSASSRWPKQEVIALINLRSGLESKYQEAGPKGPLWE 1477
            ++ A+PEQQ PPQ++  G G S +S+SSRWPK EV+ALINLRSGL+S+YQEAGPKGPLWE
Sbjct: 316  LVMAIPEQQVPPQDISSGGG-SLESSSSRWPKTEVLALINLRSGLDSRYQEAGPKGPLWE 374

Query: 1476 EISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKK- 1300
            EIS+GM+QMGY RS+KRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKK 
Sbjct: 375  EISAGMQQMGYKRSAKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKKL 434

Query: 1299 ---TLXXXXXXXXXXGNQNKQEDSMAIDPPSNLQAIMAPP 1189
               T            N N+ E+     PP   ++    P
Sbjct: 435  LGSTSGSGGSGGSTYVNPNRPEEQQQQQPPPQHESAKLDP 474



 Score =  100 bits (248), Expect = 2e-18
 Identities = 42/96 (43%), Positives = 72/96 (75%)
 Frame = -2

Query: 1584 SASSRWPKQEVIALINLRSGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWEN 1405
            ++ +RWP+QE +AL+ +RS ++  +++A  KGPLWE++S  + ++GY+RS+K+CKEK+EN
Sbjct: 98   ASGNRWPRQETLALLKIRSEMDVAFRDATLKGPLWEDVSRKLAELGYSRSAKKCKEKFEN 157

Query: 1404 INKYFKKVKESNKKRPEDAKTCPYFHQLDALYRKKT 1297
            ++KY+K+ KE    R +D K+  +F QL+AL+   T
Sbjct: 158  VHKYYKRTKEGRAGR-QDGKSYRFFSQLEALHSTAT 192


>gb|AER42647.1| GTL1 [Populus tremula x Populus alba]
          Length = 795

 Score =  202 bits (513), Expect = 3e-49
 Identities = 101/138 (73%), Positives = 113/138 (81%)
 Frame = -2

Query: 1707 QTQATEIARHQPASSEIVLAAVPEQQHPPQEMVGGSGTSFDSASSRWPKQEVIALINLRS 1528
            Q Q     R  P+ S  ++ AVPEQQ  P E+  GSG S + ASSRWPK EV+ALI LRS
Sbjct: 481  QHQQVHHPRQPPSISSDIVMAVPEQQIAPLEL--GSGGS-EPASSRWPKPEVLALIKLRS 537

Query: 1527 GLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDA 1348
            GLE++YQEAGPKGPLWEEIS+GM ++GY RSSKRCKEKWENINKYFKKVKESNKKRPEDA
Sbjct: 538  GLETRYQEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKRPEDA 597

Query: 1347 KTCPYFHQLDALYRKKTL 1294
            KTCPYFH+LDALYRKK L
Sbjct: 598  KTCPYFHELDALYRKKIL 615



 Score = 99.4 bits (246), Expect = 3e-18
 Identities = 41/91 (45%), Positives = 70/91 (76%)
 Frame = -2

Query: 1584 SASSRWPKQEVIALINLRSGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWEN 1405
            ++ +RWP+QE +AL+ +RS +++ +++A  KGPLWE++S  + +MGY RS+K+CKEK+EN
Sbjct: 104  ASGNRWPRQETLALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRSAKKCKEKFEN 163

Query: 1404 INKYFKKVKESNKKRPEDAKTCPYFHQLDAL 1312
            ++KY+K+ K+    R +D K+  +F QL+AL
Sbjct: 164  VHKYYKRTKDGRAGR-QDGKSYRFFSQLEAL 193


>ref|XP_002317033.1| predicted protein [Populus trichocarpa] gi|222860098|gb|EEE97645.1|
            predicted protein [Populus trichocarpa]
          Length = 467

 Score =  201 bits (510), Expect = 6e-49
 Identities = 99/139 (71%), Positives = 112/139 (80%)
 Frame = -2

Query: 1710 TQTQATEIARHQPASSEIVLAAVPEQQHPPQEMVGGSGTSFDSASSRWPKQEVIALINLR 1531
            TQ +A         +S I+  AVPEQQ  PQE+  G G+  + ASSRWPK EV+ALI LR
Sbjct: 142  TQLEALHNTTGSGGASAIM--AVPEQQIIPQEIGSGGGSGSEPASSRWPKPEVLALIKLR 199

Query: 1530 SGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPED 1351
            SGLE+KYQEAGPKGPLWEEIS+GM++MGY RS+KRCKEKWENINKYFKKVKESNK R ED
Sbjct: 200  SGLETKYQEAGPKGPLWEEISTGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKNRSED 259

Query: 1350 AKTCPYFHQLDALYRKKTL 1294
            AKTCPYFH+LDALYRKK L
Sbjct: 260  AKTCPYFHELDALYRKKIL 278



 Score = 97.8 bits (242), Expect = 8e-18
 Identities = 41/92 (44%), Positives = 70/92 (76%)
 Frame = -2

Query: 1584 SASSRWPKQEVIALINLRSGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWEN 1405
            ++ +RWP+QE  AL+ +RS +++ +++A  KGPLWE++S  + +MGY R++K+CKEK+EN
Sbjct: 58   ASGNRWPRQETHALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRNAKKCKEKFEN 117

Query: 1404 INKYFKKVKESNKKRPEDAKTCPYFHQLDALY 1309
            ++KY+K+ KE    R +D K+  +F QL+AL+
Sbjct: 118  VHKYYKRTKEGRAGR-QDGKSYRFFTQLEALH 148


>ref|XP_002300534.1| predicted protein [Populus trichocarpa] gi|222847792|gb|EEE85339.1|
            predicted protein [Populus trichocarpa]
          Length = 580

 Score =  199 bits (506), Expect = 2e-48
 Identities = 103/132 (78%), Positives = 114/132 (86%), Gaps = 2/132 (1%)
 Frame = -2

Query: 1683 RHQPAS--SEIVLAAVPEQQHPPQEMVGGSGTSFDSASSRWPKQEVIALINLRSGLESKY 1510
            +HQP S  SEIV+A VPEQQ  P E+  GSG S + ASSRWPK EV+ALI LRSGLE++Y
Sbjct: 442  QHQPPSISSEIVMA-VPEQQIAPLEL--GSGGS-EPASSRWPKPEVLALIKLRSGLETRY 497

Query: 1509 QEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDAKTCPYF 1330
            QEAGPKGPLWEEIS+GM ++GY RSSKRCKEKWENINKYFKKVKESNKKR EDAKTCPYF
Sbjct: 498  QEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKRTEDAKTCPYF 557

Query: 1329 HQLDALYRKKTL 1294
            H+LDALYRKK L
Sbjct: 558  HELDALYRKKIL 569



 Score =  100 bits (249), Expect = 1e-18
 Identities = 42/91 (46%), Positives = 70/91 (76%)
 Frame = -2

Query: 1584 SASSRWPKQEVIALINLRSGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWEN 1405
            ++ +RWP+QE +AL+ +RS +++ +++A  KGPLWE++S  + +MGY RS+K+CKEK+EN
Sbjct: 57   ASGNRWPRQETLALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRSAKKCKEKFEN 116

Query: 1404 INKYFKKVKESNKKRPEDAKTCPYFHQLDAL 1312
            ++KY+K+ KE    R +D K+  +F QL+AL
Sbjct: 117  VHKYYKRTKEGRAGR-QDGKSYRFFSQLEAL 146


>ref|XP_002518968.1| transcription factor, putative [Ricinus communis]
            gi|223541955|gb|EEF43501.1| transcription factor,
            putative [Ricinus communis]
          Length = 741

 Score =  192 bits (487), Expect = 3e-46
 Identities = 95/139 (68%), Positives = 109/139 (78%), Gaps = 1/139 (0%)
 Frame = -2

Query: 1707 QTQATEIARHQPASSEIVLA-AVPEQQHPPQEMVGGSGTSFDSASSRWPKQEVIALINLR 1531
            Q    ++ RH    S I    A+   +  PQE+  GS  S + +SSRWPK EV+ALI LR
Sbjct: 427  QQDKHQVHRHHDRQSSISSELAIGVAEGMPQEI--GSSRSLEPSSSRWPKAEVLALIKLR 484

Query: 1530 SGLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPED 1351
            SGLE +YQEAGPKGPLWEEIS+GM++MGY RS+KRCKEKWENINKYFKKVKESNKKRPED
Sbjct: 485  SGLEFRYQEAGPKGPLWEEISAGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKKRPED 544

Query: 1350 AKTCPYFHQLDALYRKKTL 1294
            AKTCPYFH+LDALYRKK L
Sbjct: 545  AKTCPYFHELDALYRKKVL 563



 Score =  103 bits (258), Expect = 1e-19
 Identities = 52/133 (39%), Positives = 84/133 (63%), Gaps = 15/133 (11%)
 Frame = -2

Query: 1662 EIVLAAVPEQQHPPQEMVGG-------SGTSFD--------SASSRWPKQEVIALINLRS 1528
            ++V  A P    PP    G        SG++ D        ++ +RWP+QE IAL+ +RS
Sbjct: 36   QLVEEASPISSRPPATTGGNLDDFMRLSGSAADEDELADRATSGNRWPRQETIALLQIRS 95

Query: 1527 GLESKYQEAGPKGPLWEEISSGMRQMGYNRSSKRCKEKWENINKYFKKVKESNKKRPEDA 1348
             +++ +++A  KGPLWE++S  + ++GY RS+K+CKEK+EN++KY+K+ KE    R +D 
Sbjct: 96   DMDAAFRDATVKGPLWEDVSRKLNELGYKRSAKKCKEKFENVHKYYKRTKEGRGGR-QDG 154

Query: 1347 KTCPYFHQLDALY 1309
            KT  +F QL+AL+
Sbjct: 155  KTYRFFTQLEALH 167


Top