BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000424
         (541 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282071.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-60...   128   4e-37
ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L...   128   4e-37
ref|XP_002530306.1| ubiquitin, putative [Ricinus communis] gi|25...   128   4e-37
ref|NP_001237759.1| uncharacterized protein LOC100306626 [Glycin...   128   4e-37
sp|P49636.2|RL40_NICSY RecName: Full=Ubiquitin-60S ribosomal pro...   127   9e-37

>ref|XP_002282071.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40
           [Vitis vinifera]
          Length = 228

 Score =  128 bits (322), Expect(2) = 4e-37
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -3

Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300
           L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK
Sbjct: 167 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 226

Query: 299 IK 294
           IK
Sbjct: 227 IK 228



 Score = 51.6 bits (122), Expect(2) = 4e-37
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 146 AGKQLEDGRTLADYNIQKESTLHL 169


>ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis
           sativus]
          Length = 208

 Score =  128 bits (322), Expect(2) = 4e-37
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -3

Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300
           L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK
Sbjct: 147 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 206

Query: 299 IK 294
           IK
Sbjct: 207 IK 208



 Score = 51.6 bits (122), Expect(2) = 4e-37
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 126 AGKQLEDGRTLADYNIQKESTLHL 149



 Score = 51.6 bits (122), Expect(2) = 3e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 46  AGKQLEDGRTLADYNIQKESTLHL 69



 Score = 27.7 bits (60), Expect(2) = 3e-07
 Identities = 13/14 (92%), Positives = 13/14 (92%)
 Frame = -3

Query: 479 LALVLRLRGGIIEP 438
           L LVLRLRGGIIEP
Sbjct: 67  LHLVLRLRGGIIEP 80


>ref|XP_002530306.1| ubiquitin, putative [Ricinus communis]
           gi|255578975|ref|XP_002530340.1| ubiquitin, putative
           [Ricinus communis] gi|356509194|ref|XP_003523336.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|356516113|ref|XP_003526741.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|356572584|ref|XP_003554448.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Glycine max] gi|449438865|ref|XP_004137208.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|449456437|ref|XP_004145956.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|449497417|ref|XP_004160396.1|
           PREDICTED: ubiquitin-60S ribosomal protein L40-like
           [Cucumis sativus] gi|71040673|gb|AAZ20285.1| ubiquitin
           fusion protein [Arachis hypogaea]
           gi|147769165|emb|CAN60770.1| hypothetical protein
           VITISV_012429 [Vitis vinifera]
           gi|148908659|gb|ABR17437.1| unknown [Picea sitchensis]
           gi|192910738|gb|ACF06477.1| ubiquitin fusion protein
           [Elaeis guineensis] gi|223530144|gb|EEF32056.1|
           ubiquitin, putative [Ricinus communis]
           gi|223530162|gb|EEF32073.1| ubiquitin, putative [Ricinus
           communis] gi|284433784|gb|ADB85098.1| ubiquitin C
           variant [Jatropha curcas] gi|297740140|emb|CBI30322.3|
           unnamed protein product [Vitis vinifera]
           gi|330318561|gb|AEC10952.1| ubiquitin fusion protein
           [Camellia sinensis] gi|388516721|gb|AFK46422.1| unknown
           [Lotus japonicus]
          Length = 128

 Score =  128 bits (322), Expect(2) = 4e-37
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -3

Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300
           L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK
Sbjct: 67  LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 126

Query: 299 IK 294
           IK
Sbjct: 127 IK 128



 Score = 51.6 bits (122), Expect(2) = 4e-37
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 46  AGKQLEDGRTLADYNIQKESTLHL 69


>ref|NP_001237759.1| uncharacterized protein LOC100306626 [Glycine max]
           gi|255629117|gb|ACU14903.1| unknown [Glycine max]
          Length = 128

 Score =  128 bits (322), Expect(2) = 4e-37
 Identities = 61/62 (98%), Positives = 61/62 (98%)
 Frame = -3

Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300
           L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK
Sbjct: 67  LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 126

Query: 299 IK 294
           IK
Sbjct: 127 IK 128



 Score = 51.6 bits (122), Expect(2) = 4e-37
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 46  AGKQLEDGRTLADYNIQKESTLHL 69


>sp|P49636.2|RL40_NICSY RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains:
           RecName: Full=Ubiquitin; Contains: RecName: Full=60S
           ribosomal protein L40; AltName: Full=CEP52; Flags:
           Precursor gi|170217|gb|AAA34064.1| ubiquitin fusion
           protein [Nicotiana sylvestris]
          Length = 128

 Score =  127 bits (319), Expect(2) = 9e-37
 Identities = 60/62 (96%), Positives = 61/62 (98%)
 Frame = -3

Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300
           L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKK
Sbjct: 67  LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKK 126

Query: 299 IK 294
           IK
Sbjct: 127 IK 128



 Score = 51.6 bits (122), Expect(2) = 9e-37
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -1

Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470
           AGKQLEDGRTLADYNIQKESTLHL
Sbjct: 46  AGKQLEDGRTLADYNIQKESTLHL 69