BLASTX nr result
ID: Coptis24_contig00000424
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000424 (541 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002282071.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-60... 128 4e-37 ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L... 128 4e-37 ref|XP_002530306.1| ubiquitin, putative [Ricinus communis] gi|25... 128 4e-37 ref|NP_001237759.1| uncharacterized protein LOC100306626 [Glycin... 128 4e-37 sp|P49636.2|RL40_NICSY RecName: Full=Ubiquitin-60S ribosomal pro... 127 9e-37 >ref|XP_002282071.2| PREDICTED: LOW QUALITY PROTEIN: ubiquitin-60S ribosomal protein L40 [Vitis vinifera] Length = 228 Score = 128 bits (322), Expect(2) = 4e-37 Identities = 61/62 (98%), Positives = 61/62 (98%) Frame = -3 Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300 L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK Sbjct: 167 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 226 Query: 299 IK 294 IK Sbjct: 227 IK 228 Score = 51.6 bits (122), Expect(2) = 4e-37 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 146 AGKQLEDGRTLADYNIQKESTLHL 169 >ref|XP_004156525.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] Length = 208 Score = 128 bits (322), Expect(2) = 4e-37 Identities = 61/62 (98%), Positives = 61/62 (98%) Frame = -3 Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300 L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK Sbjct: 147 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 206 Query: 299 IK 294 IK Sbjct: 207 IK 208 Score = 51.6 bits (122), Expect(2) = 4e-37 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 126 AGKQLEDGRTLADYNIQKESTLHL 149 Score = 51.6 bits (122), Expect(2) = 3e-07 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 46 AGKQLEDGRTLADYNIQKESTLHL 69 Score = 27.7 bits (60), Expect(2) = 3e-07 Identities = 13/14 (92%), Positives = 13/14 (92%) Frame = -3 Query: 479 LALVLRLRGGIIEP 438 L LVLRLRGGIIEP Sbjct: 67 LHLVLRLRGGIIEP 80 >ref|XP_002530306.1| ubiquitin, putative [Ricinus communis] gi|255578975|ref|XP_002530340.1| ubiquitin, putative [Ricinus communis] gi|356509194|ref|XP_003523336.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Glycine max] gi|356516113|ref|XP_003526741.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Glycine max] gi|356572584|ref|XP_003554448.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Glycine max] gi|449438865|ref|XP_004137208.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|449456437|ref|XP_004145956.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|449497417|ref|XP_004160396.1| PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis sativus] gi|71040673|gb|AAZ20285.1| ubiquitin fusion protein [Arachis hypogaea] gi|147769165|emb|CAN60770.1| hypothetical protein VITISV_012429 [Vitis vinifera] gi|148908659|gb|ABR17437.1| unknown [Picea sitchensis] gi|192910738|gb|ACF06477.1| ubiquitin fusion protein [Elaeis guineensis] gi|223530144|gb|EEF32056.1| ubiquitin, putative [Ricinus communis] gi|223530162|gb|EEF32073.1| ubiquitin, putative [Ricinus communis] gi|284433784|gb|ADB85098.1| ubiquitin C variant [Jatropha curcas] gi|297740140|emb|CBI30322.3| unnamed protein product [Vitis vinifera] gi|330318561|gb|AEC10952.1| ubiquitin fusion protein [Camellia sinensis] gi|388516721|gb|AFK46422.1| unknown [Lotus japonicus] Length = 128 Score = 128 bits (322), Expect(2) = 4e-37 Identities = 61/62 (98%), Positives = 61/62 (98%) Frame = -3 Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300 L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK Sbjct: 67 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 126 Query: 299 IK 294 IK Sbjct: 127 IK 128 Score = 51.6 bits (122), Expect(2) = 4e-37 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 46 AGKQLEDGRTLADYNIQKESTLHL 69 >ref|NP_001237759.1| uncharacterized protein LOC100306626 [Glycine max] gi|255629117|gb|ACU14903.1| unknown [Glycine max] Length = 128 Score = 128 bits (322), Expect(2) = 4e-37 Identities = 61/62 (98%), Positives = 61/62 (98%) Frame = -3 Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300 L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK Sbjct: 67 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 126 Query: 299 IK 294 IK Sbjct: 127 IK 128 Score = 51.6 bits (122), Expect(2) = 4e-37 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 46 AGKQLEDGRTLADYNIQKESTLHL 69 >sp|P49636.2|RL40_NICSY RecName: Full=Ubiquitin-60S ribosomal protein L40; Contains: RecName: Full=Ubiquitin; Contains: RecName: Full=60S ribosomal protein L40; AltName: Full=CEP52; Flags: Precursor gi|170217|gb|AAA34064.1| ubiquitin fusion protein [Nicotiana sylvestris] Length = 128 Score = 127 bits (319), Expect(2) = 9e-37 Identities = 60/62 (96%), Positives = 61/62 (98%) Frame = -3 Query: 479 LALVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKK 300 L LVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQLRPKKK Sbjct: 67 LHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKK 126 Query: 299 IK 294 IK Sbjct: 127 IK 128 Score = 51.6 bits (122), Expect(2) = 9e-37 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -1 Query: 541 AGKQLEDGRTLADYNIQKESTLHL 470 AGKQLEDGRTLADYNIQKESTLHL Sbjct: 46 AGKQLEDGRTLADYNIQKESTLHL 69