BLASTX nr result
ID: Coptis24_contig00000374
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000374 (1285 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|2... 339 1e-90 ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|2... 335 2e-89 ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putati... 333 4e-89 ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotei... 331 2e-88 gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium h... 329 8e-88 >ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1| predicted protein [Populus trichocarpa] Length = 284 Score = 339 bits (869), Expect = 1e-90 Identities = 183/287 (63%), Positives = 207/287 (72%) Frame = +3 Query: 78 MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257 MVRLTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN Sbjct: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60 Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437 P+L RLG G+YLPK EIDPL+SL KL+FL+L Sbjct: 61 PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120 Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617 LDN ITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LF+SK KTFT Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180 Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797 PGE+ N+PE +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240 Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938 I D + V+ QDDKM D++N A + ++ E Q+ N+ MEQ+ Sbjct: 241 ILDDTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEA-TPMEQE 284 >ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1| predicted protein [Populus trichocarpa] Length = 284 Score = 335 bits (858), Expect = 2e-89 Identities = 183/287 (63%), Positives = 204/287 (71%) Frame = +3 Query: 78 MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257 MVRLTADL+WKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN Sbjct: 1 MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60 Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437 P+L RLG G+YLPK EIDPLASL KL FL+L Sbjct: 61 PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSL 120 Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617 LDNNITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LFASK KTFT Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFT 180 Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797 PGE+ NV E +E Q P V APTP+QIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK Sbjct: 181 PGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240 Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938 I + V+ QDDKM D +N A + ++ E Q+ N+ MEQ+ Sbjct: 241 ILDGTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEA-TPMEQE 284 >ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis] gi|223548673|gb|EEF50164.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis] Length = 287 Score = 333 bits (855), Expect = 4e-89 Identities = 179/288 (62%), Positives = 204/288 (70%), Gaps = 1/288 (0%) Frame = +3 Query: 78 MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257 MVRLTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN Sbjct: 1 MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60 Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437 P+L RLG G++LPK EIDPLASL KL+FL+L Sbjct: 61 PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120 Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617 LDN+ITKKPNYRLY+I KLKSLRVLDF KVK KER+EAENLFASK AKTF Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180 Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797 PGE+ NV E +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQ+P DL Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240 Query: 798 I-PGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938 I D + V+ +DDKM D N + + + Q+ +D A+MEQ+ Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDS-ASMEQE 287 >ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera] gi|296085571|emb|CBI29303.3| unnamed protein product [Vitis vinifera] Length = 287 Score = 331 bits (849), Expect = 2e-88 Identities = 178/288 (61%), Positives = 207/288 (71%), Gaps = 1/288 (0%) Frame = +3 Query: 78 MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257 MVRLTADLIWKSPHFFNA+ +RELDLRGNK++V+ENLGATEDQFDT+DLSDNEIVKLEN Sbjct: 1 MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60 Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437 P+L RLG G+YLPK EIDPL+S KL+FL+L Sbjct: 61 PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120 Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617 LDNNITKKPNYRLYVI +LKSLR+LDF KVK+KER+EAENLFASK P KTFT Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180 Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797 PGE+ N E +E Q P V P+PE++IAIKAAIVNSQTLEEVARLEKALKSGQLPADLK Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240 Query: 798 -IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938 + + +A V +DDKM N + ++ E +QKND A MEQ+ Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVE-EQKNDDVAPMEQE 287 >gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum] Length = 285 Score = 329 bits (844), Expect = 8e-88 Identities = 176/287 (61%), Positives = 207/287 (72%) Frame = +3 Query: 78 MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257 MV+LTADLIWK PHFFNA+ +RELDLRGNKI+V+ENLGATEDQFDT+DLSDNEIVKL+NF Sbjct: 1 MVKLTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNF 60 Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437 P+L RLG G++LP EIDPL+SL KL+FL+L Sbjct: 61 PYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSL 120 Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617 LDNNITKKPNYRLYVI KLKSLRVLDF KVK KER+EAENLFASK KT Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVA 180 Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797 P E+ NV E +E+Q P V APTPEQI+AIKAAIVNSQTLEEVARLEKAL++GQLPADLK Sbjct: 181 PKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLK 240 Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938 IPGD+ + D+K D +N + + D+ + + KN+ PA MEQ+ Sbjct: 241 IPGDD-TNAAKGGDEKKVSDIQNESNVEPDNMD-EDKNEEPAPMEQE 285