BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000374
         (1285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|2...   339   1e-90
ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|2...   335   2e-89
ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putati...   333   4e-89
ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotei...   331   2e-88
gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium h...   329   8e-88

>ref|XP_002303732.1| predicted protein [Populus trichocarpa] gi|222841164|gb|EEE78711.1|
           predicted protein [Populus trichocarpa]
          Length = 284

 Score =  339 bits (869), Expect = 1e-90
 Identities = 183/287 (63%), Positives = 207/287 (72%)
 Frame = +3

Query: 78  MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257
           MVRLTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437
           P+L RLG                G+YLPK               EIDPL+SL KL+FL+L
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSLPKLQFLSL 120

Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617
           LDN ITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LF+SK           KTFT
Sbjct: 121 LDNTITKKPNYRLYVIHKLKSLRVLDFKKVKAKERAEAEHLFSSKEVEEEAKRESVKTFT 180

Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797
           PGE+ N+PE  +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK
Sbjct: 181 PGEIPNIPEVAEEQQAPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938
           I  D  +  V+ QDDKM  D++N A  + ++ E Q+ N+    MEQ+
Sbjct: 241 ILDDTGSNSVKEQDDKMATDSQNEA--EPNNLEEQKDNEA-TPMEQE 284


>ref|XP_002299368.1| predicted protein [Populus trichocarpa] gi|222846626|gb|EEE84173.1|
           predicted protein [Populus trichocarpa]
          Length = 284

 Score =  335 bits (858), Expect = 2e-89
 Identities = 183/287 (63%), Positives = 204/287 (71%)
 Frame = +3

Query: 78  MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257
           MVRLTADL+WKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVRLTADLVWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437
           P+L RLG                G+YLPK               EIDPLASL KL FL+L
Sbjct: 61  PYLNRLGTLIINNNRITRINPNIGEYLPKLHTLVLINNRLVNLAEIDPLASLPKLHFLSL 120

Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617
           LDNNITKKPNYRLYVI KLKSLRVLDF KVK KER EAE+LFASK           KTFT
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKGKERAEAEHLFASKEVEEEARRESVKTFT 180

Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797
           PGE+ NV E  +E Q P V APTP+QIIAIKAAIVNSQTLEEVARLEKAL SGQLPADLK
Sbjct: 181 PGEVPNVLEGAEEQQAPKVVAPTPDQIIAIKAAIVNSQTLEEVARLEKALNSGQLPADLK 240

Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938
           I     +  V+ QDDKM  D +N A  + ++ E Q+ N+    MEQ+
Sbjct: 241 ILDGTGSNSVKEQDDKMATDNQNEA--EPNNLEEQKDNEA-TPMEQE 284


>ref|XP_002512712.1| U2 small nuclear ribonucleoprotein A, putative [Ricinus communis]
           gi|223548673|gb|EEF50164.1| U2 small nuclear
           ribonucleoprotein A, putative [Ricinus communis]
          Length = 287

 Score =  333 bits (855), Expect = 4e-89
 Identities = 179/288 (62%), Positives = 204/288 (70%), Gaps = 1/288 (0%)
 Frame = +3

Query: 78  MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257
           MVRLTADLIWKSPHFFNA+ +RELDLRGNKI V+ENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIPVIENLGATEDQFDTIDLSDNEIVKLENM 60

Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437
           P+L RLG                G++LPK               EIDPLASL KL+FL+L
Sbjct: 61  PYLTRLGTLLINNNRITRINPNIGEFLPKLHTLVLTNNRLVNLVEIDPLASLPKLQFLSL 120

Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617
           LDN+ITKKPNYRLY+I KLKSLRVLDF KVK KER+EAENLFASK          AKTF 
Sbjct: 121 LDNSITKKPNYRLYIIHKLKSLRVLDFKKVKSKERMEAENLFASKEVEEEAIRESAKTFI 180

Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797
           PGE+ NV E  +E Q P V APTPEQIIAIKAAIVNSQTLEEVARLEKAL SGQ+P DL 
Sbjct: 181 PGEVPNVTEDAEEQQNPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALNSGQIPTDLN 240

Query: 798 I-PGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938
           I   D +   V+ +DDKM  D  N    +  + + Q+ +D  A+MEQ+
Sbjct: 241 IFDNDSELNTVQEKDDKMATDGDNKTDHEPSNLDEQKDSDS-ASMEQE 287


>ref|XP_002275396.1| PREDICTED: U2 small nuclear ribonucleoprotein A' [Vitis vinifera]
           gi|296085571|emb|CBI29303.3| unnamed protein product
           [Vitis vinifera]
          Length = 287

 Score =  331 bits (849), Expect = 2e-88
 Identities = 178/288 (61%), Positives = 207/288 (71%), Gaps = 1/288 (0%)
 Frame = +3

Query: 78  MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257
           MVRLTADLIWKSPHFFNA+ +RELDLRGNK++V+ENLGATEDQFDT+DLSDNEIVKLEN 
Sbjct: 1   MVRLTADLIWKSPHFFNAIRERELDLRGNKVAVIENLGATEDQFDTIDLSDNEIVKLENL 60

Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437
           P+L RLG                G+YLPK               EIDPL+S  KL+FL+L
Sbjct: 61  PYLNRLGTLLINNNRITRINPNIGEYLPKLHTLVLTNNRLVNLAEIDPLSSFPKLQFLSL 120

Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617
           LDNNITKKPNYRLYVI +LKSLR+LDF KVK+KER+EAENLFASK         P KTFT
Sbjct: 121 LDNNITKKPNYRLYVIHRLKSLRLLDFKKVKNKERLEAENLFASKEVEEEAKQEPLKTFT 180

Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797
           PGE+ N  E  +E Q P V  P+PE++IAIKAAIVNSQTLEEVARLEKALKSGQLPADLK
Sbjct: 181 PGEMPNALEPAEEQQIPKVVGPSPEELIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 240

Query: 798 -IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938
            +  + +A  V  +DDKM     N + ++    E +QKND  A MEQ+
Sbjct: 241 SLVENTRADVVNEKDDKMVSSNPNTSRDEPKTVE-EQKNDDVAPMEQE 287


>gb|ADG27843.1| U2 small nuclear ribonucleoprotein A [Gossypium hirsutum]
          Length = 285

 Score =  329 bits (844), Expect = 8e-88
 Identities = 176/287 (61%), Positives = 207/287 (72%)
 Frame = +3

Query: 78  MVRLTADLIWKSPHFFNAVSDRELDLRGNKISVLENLGATEDQFDTVDLSDNEIVKLENF 257
           MV+LTADLIWK PHFFNA+ +RELDLRGNKI+V+ENLGATEDQFDT+DLSDNEIVKL+NF
Sbjct: 1   MVKLTADLIWKCPHFFNALKERELDLRGNKIAVIENLGATEDQFDTIDLSDNEIVKLDNF 60

Query: 258 PFLARLGXXXXXXXXXXXXXXXXGDYLPKXXXXXXXXXXXXXXXEIDPLASLTKLRFLTL 437
           P+L RLG                G++LP                EIDPL+SL KL+FL+L
Sbjct: 61  PYLKRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRLVNLVEIDPLSSLPKLQFLSL 120

Query: 438 LDNNITKKPNYRLYVIFKLKSLRVLDFNKVKHKERIEAENLFASKXXXXXXXXXPAKTFT 617
           LDNNITKKPNYRLYVI KLKSLRVLDF KVK KER+EAENLFASK           KT  
Sbjct: 121 LDNNITKKPNYRLYVIHKLKSLRVLDFKKVKAKERLEAENLFASKEAEEEIKKESTKTVA 180

Query: 618 PGELQNVPESPKEDQTPTVTAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGQLPADLK 797
           P E+ NV E  +E+Q P V APTPEQI+AIKAAIVNSQTLEEVARLEKAL++GQLPADLK
Sbjct: 181 PKEVPNVSEVAEEEQMPKVVAPTPEQILAIKAAIVNSQTLEEVARLEKALQTGQLPADLK 240

Query: 798 IPGDEKATDVRSQDDKMEVDAKNGATEQLDDAEHQQKNDGPATMEQD 938
           IPGD+     +  D+K   D +N +  + D+ + + KN+ PA MEQ+
Sbjct: 241 IPGDD-TNAAKGGDEKKVSDIQNESNVEPDNMD-EDKNEEPAPMEQE 285