BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000370
         (2265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]                  260   1e-66
ref|XP_002530460.1| transcription cofactor, putative [Ricinus co...   258   6e-66
ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra...   244   5e-62
ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana] ...   208   4e-51
ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arab...   206   2e-50

>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
          Length = 1405

 Score =  260 bits (665), Expect = 1e-66
 Identities = 141/227 (62%), Positives = 170/227 (74%), Gaps = 9/227 (3%)
 Frame = -3

Query: 2251 SIMDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELN 2072
            ++MD NNWRP P    + ++T DWRT LQPDSR RIVNKIMDTLKRHLP SG +G+ EL 
Sbjct: 14   NLMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELK 73

Query: 2071 KIAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPGSH 1901
            KIA RFEEKIY AA+SQSDYLRKISLKML+ME+KSQN     + +N+  S   P DPG  
Sbjct: 74   KIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPG-- 131

Query: 1900 SMQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTP 1727
            SMQ+QV NQG   P    +NQSQVRQQL+SQNIQN  +S GVQ S+ L SAL SV+GL+ 
Sbjct: 132  SMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQ 191

Query: 1726 SNMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1598
            S + + +GQ+ N+QNMSGISQN+G     QGVPSN+F N+QRQ+ GR
Sbjct: 192  SPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGR 238



 Score =  202 bits (513), Expect = 4e-49
 Identities = 115/223 (51%), Positives = 149/223 (66%), Gaps = 10/223 (4%)
 Frame = -3

Query: 643  NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488
            N LQRD+QQRL  SG      +QPQ VM+Q++   Q QR LPE SSTS+DST QTG AN 
Sbjct: 553  NPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANG 612

Query: 487  ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVL-TQPK-EQIEKLKSLKLYLER 314
             DWQEE YQKIK+MK+ Y P+L EMYQK+ AKLQQ + L  QPK +Q+EKLK  K  LER
Sbjct: 613  VDWQEEVYQKIKSMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLER 672

Query: 313  MLHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMX 134
            ++ FLQV+K+NI   +KEKLGSYEKQIV F++++R +KP+ S Q Q QL  +  H++   
Sbjct: 673  IISFLQVSKSNILPSFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQ- 731

Query: 133  XXXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5
                          H+N MN Q+Q MN+  S  ++QP  VT++
Sbjct: 732  ----QQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNV 770


>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
            gi|223530005|gb|EEF31930.1| transcription cofactor,
            putative [Ricinus communis]
          Length = 1382

 Score =  258 bits (658), Expect = 6e-66
 Identities = 140/224 (62%), Positives = 162/224 (72%), Gaps = 10/224 (4%)
 Frame = -3

Query: 2245 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 2066
            MD NNWRP  Q     V+T DWR TLQPDSR RIVNKIM+TLKRHLP SG EG+ EL KI
Sbjct: 1    MDTNNWRPTAQGGEPAVDTGDWRATLQPDSRQRIVNKIMETLKRHLPFSGQEGLEELKKI 60

Query: 2065 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPG-SHS 1898
            AVRFEEKIY AATSQSDYLRKISLKMLTME+KSQN     VP N   +   P DPG S S
Sbjct: 61   AVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQS 120

Query: 1897 MQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 1724
            MQ QV NQG   P    +NQ+Q RQQL+SQNIQN   S G+Q+S  L SAL  V+GL  +
Sbjct: 121  MQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQT 180

Query: 1723 NMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMP 1604
            ++ N +GQ+SN+QN+SG+ QN+      QGVPSN+F N+QRQMP
Sbjct: 181  SIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFANSQRQMP 224



 Score =  181 bits (459), Expect = 7e-43
 Identities = 104/223 (46%), Positives = 138/223 (61%), Gaps = 10/223 (4%)
 Frame = -3

Query: 643  NTLQRDLQQRLHLSGVQPQTVMEQKQI--------QAQRVLPEASSTSIDSTAQTGNANT 488
            NTLQRD+Q  L  S   P ++ +Q+ +        Q+QR LPE SSTS+DSTAQTG+AN 
Sbjct: 546  NTLQRDMQAGLQASSQAPSSLTQQQNVIDQQKQLYQSQRPLPETSSTSLDSTAQTGHANA 605

Query: 487  ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQP--KEQIEKLKSLKLYLER 314
             D QEE YQKIKAMK+ YFP+L EMY K+  KLQQ + L QP   EQ+EKL+  K  LER
Sbjct: 606  VDVQEEVYQKIKAMKEMYFPELNEMYHKIATKLQQHDSLPQPPKTEQLEKLRLFKSMLER 665

Query: 313  MLHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMX 134
            ++ FLQV K+++   ++EKLGSYEKQI+ F+N++R K+ I S Q  Q         LS  
Sbjct: 666  IITFLQVPKSSVMPSFREKLGSYEKQIINFINTNRPKRQITSMQQGQ---------LSQP 716

Query: 133  XXXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5
                          HE+ MNPQMQ MN+  S  ++Q   ++S+
Sbjct: 717  QIQQPQSQVPQVQSHESQMNPQMQSMNMQGSVQTMQQNNMSSL 759


>ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit
            15a-like, partial [Cucumis sativus]
          Length = 589

 Score =  244 bits (624), Expect = 5e-62
 Identities = 135/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%)
 Frame = -3

Query: 2245 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 2066
            MD NNWRP    EP M ET DWR+ LQPDSR RIVNKIM+TLKRHLP+SG EG++EL KI
Sbjct: 1    MDNNNWRPTQAVEPGM-ETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 59

Query: 2065 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQ---NTGVPTNSAVSGQNPADPGSHSM 1895
            AVRFEEKI+ AATSQSDYLRKISLKMLTMETK+Q      +P+N  V G  P D  S SM
Sbjct: 60   AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSNPMVPGNKPLDASSQSM 119

Query: 1894 QSQVRNQGPPSVAL---SNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 1724
            Q  V NQG PS+++   SNQ Q RQQ++ QNI N       Q+S+SL SA+  V GL  S
Sbjct: 120  QPPVINQG-PSISVPQSSNQPQPRQQILQQNIPNNIVP---QSSSSLSSAVPPVAGLASS 175

Query: 1723 NMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1598
            +M+N +GQ+ N+QN+SG+ QN+G     QGVPSN+F+N+QR + GR
Sbjct: 176  SMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNVFSNSQRPLQGR 221



 Score = 70.1 bits (170), Expect = 2e-09
 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 8/70 (11%)
 Frame = -3

Query: 643 NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488
           N +  +LQQR+ + G      +Q Q VM+Q++    +QR LPE SSTS+DSTAQTG AN 
Sbjct: 520 NAMSHELQQRIPVGGQAPGSLLQSQNVMDQQKQLYHSQRALPETSSTSLDSTAQTGQANG 579

Query: 487 ADWQEEAYQK 458
            DWQEE YQK
Sbjct: 580 GDWQEEIYQK 589


>ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana]
            gi|395406776|sp|F4I171.1|MD15A_ARATH RecName:
            Full=Mediator of RNA polymerase II transcription subunit
            15a gi|332191243|gb|AEE29364.1| uncharacterized protein
            [Arabidopsis thaliana]
          Length = 1335

 Score =  208 bits (530), Expect = 4e-51
 Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 4/220 (1%)
 Frame = -3

Query: 2245 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 2069
            MD NNWRP+ P  EP M +T DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL +
Sbjct: 1    MDNNNWRPSLPNGEPAM-DTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59

Query: 2068 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 1889
            IA RFEEKI+  A +Q+DYLRKIS+KMLTMETKSQN      +  S   PA     S+ S
Sbjct: 60   IAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNA-----AGSSAAIPAANNGTSIDS 114

Query: 1888 QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMT 1715
               NQG   P    +NQSQ  Q L+SQ +QN T S G+  S +LPS++  V+ +T +N T
Sbjct: 115  IPTNQGQLLPGSLSTNQSQAPQPLLSQTMQNNTAS-GMTGSTALPSSMPPVSSITNNNTT 173

Query: 1714 NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1598
            + + Q++N+QN++G+ Q ++G  G+ SN+F+  QRQM GR
Sbjct: 174  SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGPQRQMLGR 213



 Score =  177 bits (450), Expect = 8e-42
 Identities = 101/222 (45%), Positives = 136/222 (61%), Gaps = 9/222 (4%)
 Frame = -3

Query: 643  NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488
            N LQ+D+QQRL  SG      + PQ V++Q++   Q+QR LPE  S+S+DSTAQT +AN 
Sbjct: 531  NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 590

Query: 487  ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQPK-EQIEKLKSLKLYLERM 311
             DWQEE YQKIK+MK+TY PDL E+YQ+V AKLQQ  +  Q + +Q+EKL+  K  LERM
Sbjct: 591  GDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSMPQQQRSDQLEKLRQFKTMLERM 650

Query: 310  LHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMXX 131
            + FL V+K+NI    K+K+  YEKQI+ FLN HR +KP+   Q  Q           M  
Sbjct: 651  IQFLSVSKSNIMPALKDKVAYYEKQIIGFLNMHRPRKPVQQGQLPQS---------QMQP 701

Query: 130  XXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5
                         H+N  NPQMQ M++  +G   Q  ++T+M
Sbjct: 702  MQQPQSQTVQDQSHDNQTNPQMQSMSMQGAGPRAQQSSMTNM 743


>ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp.
            lyrata] gi|297338724|gb|EFH69141.1| hypothetical protein
            ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata]
          Length = 1343

 Score =  206 bits (524), Expect = 2e-50
 Identities = 114/220 (51%), Positives = 152/220 (69%), Gaps = 4/220 (1%)
 Frame = -3

Query: 2245 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 2069
            MD NNWRP+ P  EP M ++ DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL +
Sbjct: 1    MDNNNWRPSLPNGEPAM-DSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59

Query: 2068 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 1889
            IA RFEEKI+  A +Q+DYLRKIS+KMLTMETKSQN      +  S   PA     S+ S
Sbjct: 60   IAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNA-----AGSSASIPAANNGTSIDS 114

Query: 1888 QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMT 1715
               NQG   P    +NQSQ  Q L+SQ +QN + S G+  S +LPS++  V+ +T +N T
Sbjct: 115  IPTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSAS-GMTGSTALPSSMPPVSSITNNNAT 173

Query: 1714 NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1598
            + + Q++N+QN++G+ Q ++G  G+ SN+F+ +QRQM GR
Sbjct: 174  SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGR 213



 Score =  172 bits (437), Expect = 3e-40
 Identities = 100/222 (45%), Positives = 133/222 (59%), Gaps = 9/222 (4%)
 Frame = -3

Query: 643  NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488
            N LQ+D+QQRL  SG      + PQ V++Q++   Q+QR LPE  S+S+DSTAQT +AN 
Sbjct: 535  NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 594

Query: 487  ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQPK-EQIEKLKSLKLYLERM 311
             DWQEE YQKIK+MK+TY PDL E+YQ+V AKLQQ  +  Q + +Q EKLK  K  LERM
Sbjct: 595  GDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSLPQQQRSDQFEKLKQFKTMLERM 654

Query: 310  LHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMXX 131
            + FL V+K+NI    K+K+  YEKQI+ FLN HR +KP+   Q  Q           M  
Sbjct: 655  IQFLSVSKSNIMPALKDKVAYYEKQIIGFLNMHRPRKPVQQGQLPQS---------QMQP 705

Query: 130  XXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5
                         H+N  N QMQ M++  +G   Q  ++ +M
Sbjct: 706  MQQPQSQTVQDQSHDNQTNQQMQSMSMQGAGPRAQQSSLPNM 747