BLASTX nr result
ID: Coptis24_contig00000370
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000370 (2265 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata] 260 1e-66 ref|XP_002530460.1| transcription cofactor, putative [Ricinus co... 258 6e-66 ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II tra... 244 5e-62 ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana] ... 208 4e-51 ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arab... 206 2e-50 >gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata] Length = 1405 Score = 260 bits (665), Expect = 1e-66 Identities = 141/227 (62%), Positives = 170/227 (74%), Gaps = 9/227 (3%) Frame = -3 Query: 2251 SIMDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELN 2072 ++MD NNWRP P + ++T DWRT LQPDSR RIVNKIMDTLKRHLP SG +G+ EL Sbjct: 14 NLMDTNNWRPTPPVGESNLDTGDWRTQLQPDSRQRIVNKIMDTLKRHLPFSGQDGLNELK 73 Query: 2071 KIAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPGSH 1901 KIA RFEEKIY AA+SQSDYLRKISLKML+ME+KSQN + +N+ S P DPG Sbjct: 74 KIAGRFEEKIYTAASSQSDYLRKISLKMLSMESKSQNAMPNSLQSNNPGSSNRPPDPG-- 131 Query: 1900 SMQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTP 1727 SMQ+QV NQG P +NQSQVRQQL+SQNIQN +S GVQ S+ L SAL SV+GL+ Sbjct: 132 SMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMSSAGVQGSSGLSSALPSVSGLSQ 191 Query: 1726 SNMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1598 S + + +GQ+ N+QNMSGISQN+G QGVPSN+F N+QRQ+ GR Sbjct: 192 SPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGR 238 Score = 202 bits (513), Expect = 4e-49 Identities = 115/223 (51%), Positives = 149/223 (66%), Gaps = 10/223 (4%) Frame = -3 Query: 643 NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488 N LQRD+QQRL SG +QPQ VM+Q++ Q QR LPE SSTS+DST QTG AN Sbjct: 553 NPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANG 612 Query: 487 ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVL-TQPK-EQIEKLKSLKLYLER 314 DWQEE YQKIK+MK+ Y P+L EMYQK+ AKLQQ + L QPK +Q+EKLK K LER Sbjct: 613 VDWQEEVYQKIKSMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLER 672 Query: 313 MLHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMX 134 ++ FLQV+K+NI +KEKLGSYEKQIV F++++R +KP+ S Q Q QL + H++ Sbjct: 673 IISFLQVSKSNILPSFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQ- 731 Query: 133 XXXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5 H+N MN Q+Q MN+ S ++QP VT++ Sbjct: 732 ----QQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNV 770 >ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis] gi|223530005|gb|EEF31930.1| transcription cofactor, putative [Ricinus communis] Length = 1382 Score = 258 bits (658), Expect = 6e-66 Identities = 140/224 (62%), Positives = 162/224 (72%), Gaps = 10/224 (4%) Frame = -3 Query: 2245 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 2066 MD NNWRP Q V+T DWR TLQPDSR RIVNKIM+TLKRHLP SG EG+ EL KI Sbjct: 1 MDTNNWRPTAQGGEPAVDTGDWRATLQPDSRQRIVNKIMETLKRHLPFSGQEGLEELKKI 60 Query: 2065 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQN---TGVPTNSAVSGQNPADPG-SHS 1898 AVRFEEKIY AATSQSDYLRKISLKMLTME+KSQN VP N + P DPG S S Sbjct: 61 AVRFEEKIYTAATSQSDYLRKISLKMLTMESKSQNNVPNSVPPNPFGNNNRPPDPGASQS 120 Query: 1897 MQSQVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 1724 MQ QV NQG P +NQ+Q RQQL+SQNIQN S G+Q+S L SAL V+GL + Sbjct: 121 MQPQVHNQGQSLPVPLSANQTQTRQQLLSQNIQNNMASTGIQSSAGLTSALPPVSGLAQT 180 Query: 1723 NMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMP 1604 ++ N +GQ+SN+QN+SG+ QN+ QGVPSN+F N+QRQMP Sbjct: 181 SIPNVVGQNSNMQNISGVPQNSAGNSLGQGVPSNMFANSQRQMP 224 Score = 181 bits (459), Expect = 7e-43 Identities = 104/223 (46%), Positives = 138/223 (61%), Gaps = 10/223 (4%) Frame = -3 Query: 643 NTLQRDLQQRLHLSGVQPQTVMEQKQI--------QAQRVLPEASSTSIDSTAQTGNANT 488 NTLQRD+Q L S P ++ +Q+ + Q+QR LPE SSTS+DSTAQTG+AN Sbjct: 546 NTLQRDMQAGLQASSQAPSSLTQQQNVIDQQKQLYQSQRPLPETSSTSLDSTAQTGHANA 605 Query: 487 ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQP--KEQIEKLKSLKLYLER 314 D QEE YQKIKAMK+ YFP+L EMY K+ KLQQ + L QP EQ+EKL+ K LER Sbjct: 606 VDVQEEVYQKIKAMKEMYFPELNEMYHKIATKLQQHDSLPQPPKTEQLEKLRLFKSMLER 665 Query: 313 MLHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMX 134 ++ FLQV K+++ ++EKLGSYEKQI+ F+N++R K+ I S Q Q LS Sbjct: 666 IITFLQVPKSSVMPSFREKLGSYEKQIINFINTNRPKRQITSMQQGQ---------LSQP 716 Query: 133 XXXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5 HE+ MNPQMQ MN+ S ++Q ++S+ Sbjct: 717 QIQQPQSQVPQVQSHESQMNPQMQSMNMQGSVQTMQQNNMSSL 759 >ref|XP_004171466.1| PREDICTED: mediator of RNA polymerase II transcription subunit 15a-like, partial [Cucumis sativus] Length = 589 Score = 244 bits (624), Expect = 5e-62 Identities = 135/226 (59%), Positives = 164/226 (72%), Gaps = 10/226 (4%) Frame = -3 Query: 2245 MDGNNWRPAPQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNKI 2066 MD NNWRP EP M ET DWR+ LQPDSR RIVNKIM+TLKRHLP+SG EG++EL KI Sbjct: 1 MDNNNWRPTQAVEPGM-ETVDWRSQLQPDSRQRIVNKIMETLKRHLPVSGQEGLSELRKI 59 Query: 2065 AVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQ---NTGVPTNSAVSGQNPADPGSHSM 1895 AVRFEEKI+ AATSQSDYLRKISLKMLTMETK+Q +P+N V G P D S SM Sbjct: 60 AVRFEEKIFTAATSQSDYLRKISLKMLTMETKTQPPMGNPLPSNPMVPGNKPLDASSQSM 119 Query: 1894 QSQVRNQGPPSVAL---SNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPS 1724 Q V NQG PS+++ SNQ Q RQQ++ QNI N Q+S+SL SA+ V GL S Sbjct: 120 QPPVINQG-PSISVPQSSNQPQPRQQILQQNIPNNIVP---QSSSSLSSAVPPVAGLASS 175 Query: 1723 NMTNAIGQSSNLQNMSGISQNTG----VQGVPSNIFTNTQRQMPGR 1598 +M+N +GQ+ N+QN+SG+ QN+G QGVPSN+F+N+QR + GR Sbjct: 176 SMSNMVGQNPNIQNVSGVPQNSGGNAMGQGVPSNVFSNSQRPLQGR 221 Score = 70.1 bits (170), Expect = 2e-09 Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 8/70 (11%) Frame = -3 Query: 643 NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488 N + +LQQR+ + G +Q Q VM+Q++ +QR LPE SSTS+DSTAQTG AN Sbjct: 520 NAMSHELQQRIPVGGQAPGSLLQSQNVMDQQKQLYHSQRALPETSSTSLDSTAQTGQANG 579 Query: 487 ADWQEEAYQK 458 DWQEE YQK Sbjct: 580 GDWQEEIYQK 589 >ref|NP_173030.1| uncharacterized protein [Arabidopsis thaliana] gi|395406776|sp|F4I171.1|MD15A_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 15a gi|332191243|gb|AEE29364.1| uncharacterized protein [Arabidopsis thaliana] Length = 1335 Score = 208 bits (530), Expect = 4e-51 Identities = 116/220 (52%), Positives = 151/220 (68%), Gaps = 4/220 (1%) Frame = -3 Query: 2245 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 2069 MD NNWRP+ P EP M +T DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL + Sbjct: 1 MDNNNWRPSLPNGEPAM-DTGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59 Query: 2068 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 1889 IA RFEEKI+ A +Q+DYLRKIS+KMLTMETKSQN + S PA S+ S Sbjct: 60 IAARFEEKIFSGALNQTDYLRKISMKMLTMETKSQNA-----AGSSAAIPAANNGTSIDS 114 Query: 1888 QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMT 1715 NQG P +NQSQ Q L+SQ +QN T S G+ S +LPS++ V+ +T +N T Sbjct: 115 IPTNQGQLLPGSLSTNQSQAPQPLLSQTMQNNTAS-GMTGSTALPSSMPPVSSITNNNTT 173 Query: 1714 NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1598 + + Q++N+QN++G+ Q ++G G+ SN+F+ QRQM GR Sbjct: 174 SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGPQRQMLGR 213 Score = 177 bits (450), Expect = 8e-42 Identities = 101/222 (45%), Positives = 136/222 (61%), Gaps = 9/222 (4%) Frame = -3 Query: 643 NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488 N LQ+D+QQRL SG + PQ V++Q++ Q+QR LPE S+S+DSTAQT +AN Sbjct: 531 NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 590 Query: 487 ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQPK-EQIEKLKSLKLYLERM 311 DWQEE YQKIK+MK+TY PDL E+YQ+V AKLQQ + Q + +Q+EKL+ K LERM Sbjct: 591 GDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSMPQQQRSDQLEKLRQFKTMLERM 650 Query: 310 LHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMXX 131 + FL V+K+NI K+K+ YEKQI+ FLN HR +KP+ Q Q M Sbjct: 651 IQFLSVSKSNIMPALKDKVAYYEKQIIGFLNMHRPRKPVQQGQLPQS---------QMQP 701 Query: 130 XXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5 H+N NPQMQ M++ +G Q ++T+M Sbjct: 702 MQQPQSQTVQDQSHDNQTNPQMQSMSMQGAGPRAQQSSMTNM 743 >ref|XP_002892882.1| hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata] gi|297338724|gb|EFH69141.1| hypothetical protein ARALYDRAFT_471776 [Arabidopsis lyrata subsp. lyrata] Length = 1343 Score = 206 bits (524), Expect = 2e-50 Identities = 114/220 (51%), Positives = 152/220 (69%), Gaps = 4/220 (1%) Frame = -3 Query: 2245 MDGNNWRPA-PQPEPTMVETPDWRTTLQPDSRHRIVNKIMDTLKRHLPISGPEGITELNK 2069 MD NNWRP+ P EP M ++ DWRT L PDSR +IVNKIM+TLK+HLP SGPEGI EL + Sbjct: 1 MDNNNWRPSLPNGEPAM-DSGDWRTQLPPDSRQKIVNKIMETLKKHLPFSGPEGINELRR 59 Query: 2068 IAVRFEEKIYMAATSQSDYLRKISLKMLTMETKSQNTGVPTNSAVSGQNPADPGSHSMQS 1889 IA RFEEKI+ A +Q+DYLRKIS+KMLTMETKSQN + S PA S+ S Sbjct: 60 IAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNA-----AGSSASIPAANNGTSIDS 114 Query: 1888 QVRNQGP--PSVALSNQSQVRQQLMSQNIQNTTTSGGVQNSNSLPSALSSVTGLTPSNMT 1715 NQG P +NQSQ Q L+SQ +QN + S G+ S +LPS++ V+ +T +N T Sbjct: 115 IPTNQGHLLPGSLPTNQSQAPQPLLSQTMQNNSAS-GMTGSTALPSSMPPVSSITNNNAT 173 Query: 1714 NAIGQSSNLQNMSGISQ-NTGVQGVPSNIFTNTQRQMPGR 1598 + + Q++N+QN++G+ Q ++G G+ SN+F+ +QRQM GR Sbjct: 174 SVVNQNANMQNVAGMLQDSSGQHGLSSNMFSGSQRQMLGR 213 Score = 172 bits (437), Expect = 3e-40 Identities = 100/222 (45%), Positives = 133/222 (59%), Gaps = 9/222 (4%) Frame = -3 Query: 643 NTLQRDLQQRLHLSG------VQPQTVMEQKQ--IQAQRVLPEASSTSIDSTAQTGNANT 488 N LQ+D+QQRL SG + PQ V++Q++ Q+QR LPE S+S+DSTAQT +AN Sbjct: 535 NLLQQDVQQRLQASGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSSLDSTAQTESANG 594 Query: 487 ADWQEEAYQKIKAMKDTYFPDLTEMYQKVCAKLQQQEVLTQPK-EQIEKLKSLKLYLERM 311 DWQEE YQKIK+MK+TY PDL E+YQ+V AKLQQ + Q + +Q EKLK K LERM Sbjct: 595 GDWQEEVYQKIKSMKETYLPDLNEIYQRVAAKLQQDSLPQQQRSDQFEKLKQFKTMLERM 654 Query: 310 LHFLQVAKNNIPAGYKEKLGSYEKQIVQFLNSHRGKKPIPSHQGQQQLQTSGGHTLSMXX 131 + FL V+K+NI K+K+ YEKQI+ FLN HR +KP+ Q Q M Sbjct: 655 IQFLSVSKSNIMPALKDKVAYYEKQIIGFLNMHRPRKPVQQGQLPQS---------QMQP 705 Query: 130 XXXXXXXXXXXXXHENHMNPQMQPMNIPNSGTSVQPGAVTSM 5 H+N N QMQ M++ +G Q ++ +M Sbjct: 706 MQQPQSQTVQDQSHDNQTNQQMQSMSMQGAGPRAQQSSLPNM 747