BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000345
         (1266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    72   5e-19
ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medica...    71   6e-17
gb|ABN08796.1| Ribonuclease H [Medicago truncatula]                    71   7e-10
gb|ABN08954.1| Ribonuclease H [Medicago truncatula]                    68   6e-09
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    67   1e-08

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 72.0 bits (175), Expect(3) = 5e-19
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
 Frame = +1

Query: 691  KSIGWLLPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYE 870
            + I W+ P+ G +K N DGS +G+P  G +G+IF      F G     +G  T  +AEY 
Sbjct: 241  REIIWVPPHGGCMKINCDGSVVGSPSCGSIGVIFRASQTMFCGAFAQNIGYATALEAEYS 300

Query: 871  GIVMASEIVVSKRWLHLWIESDLMAVVKAF-TNGKVSWTLKARW----MWAKQTLVHWTI 1035
              + A E        ++WIE+D + V++AF  N  V W +  RW    ++ +   +    
Sbjct: 301  ACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTGVPWKMHIRWHNCLLFCRS--IRSLC 358

Query: 1036 AYIHREGN 1059
             +++REGN
Sbjct: 359  THVNREGN 366



 Score = 36.6 bits (83), Expect(3) = 5e-19
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 243 KVPTDDKVRLKGIYIIS-RCCLCKEDEEIMPH 335
           K+PTDD +R +G YI+S  CC C++  E   H
Sbjct: 95  KLPTDDNLRKRGCYIVSICCCFCRKQAETSSH 126



 Score = 33.1 bits (74), Expect(3) = 5e-19
 Identities = 21/98 (21%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
 Frame = +2

Query: 368 IWDWLSEIFKVHPLLNLQGVITATTTLSPIKEELWNSAVAQLMNQIWKTRNDIFFDDKRL 547
           +WDWL +    H  L+   ++     +S + + + NSA+  +M  IW   N+ +FD  + 
Sbjct: 137 LWDWLLKATDQH--LDFSSILN----ISRMVQHVMNSAIVHIMWSIWLECNNKYFDGVQK 190

Query: 548 HIPFFKNEII-KVVKAAGLVE----SNTVEDLSILHIF 646
            +    N I+ +V++ + +++    +++++D  +  +F
Sbjct: 191 PMSTLFNTILAEVLRLSFMLDIVKGASSMQDFKLARLF 228


>ref|XP_003621690.1| Cytochrome c biogenesis protein ccsA [Medicago truncatula]
            gi|355496705|gb|AES77908.1| Cytochrome c biogenesis
            protein ccsA [Medicago truncatula]
          Length = 666

 Score = 70.9 bits (172), Expect(3) = 6e-17
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
 Frame = +1

Query: 703  WLLPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVM 882
            W  P   ++K N DGSS+G    G +GI+  D    FLG     +G  T  +AE+   +M
Sbjct: 216  WKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMM 275

Query: 883  ASEIVVSKRWLHLWIESDLMAVVKAFTNG-KVSWTLKARWM--WAKQTLVHWTIAYIHRE 1053
            A E     + +H+ +E+D + VV AF  G  V W ++ARW   W     +  +  +I RE
Sbjct: 276  AMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILRE 335

Query: 1054 GN 1059
            GN
Sbjct: 336  GN 337



 Score = 35.0 bits (79), Expect(3) = 6e-17
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 243 KVPTDDKVRLKGIYIISRCCLCKEDEEIMPH 335
           K+PTD+ +R +G  I+S CC C +  E   H
Sbjct: 60  KLPTDENLRKRGCLIVSICCFCMKSAESSQH 90



 Score = 28.5 bits (62), Expect(3) = 6e-17
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
 Frame = +2

Query: 368 IWDWLSEIFKVHPLLN----LQGVITATTTLSPIKEELWNSAVAQLMNQIWKTRNDIFFD 535
           +WDWL +      LL+    LQ +I    + S +   + NSA+   +  IW  RN   F 
Sbjct: 101 LWDWLGK--GTDKLLDCSSCLQLLIRNWGSGSKLVNNILNSAIIHTIWSIWIERNQRCFH 158

Query: 536 DKRLHIPFFKNEIIKVVK---AAGLVESNT-VEDLSILHIF 646
           +K   +    N I+  VK   +  +++ N+ ++D  +  +F
Sbjct: 159 NKHQAMTTLFNIILAEVKMSFSLCMIKGNSAMQDYKVAKLF 199


>gb|ABN08796.1| Ribonuclease H [Medicago truncatula]
          Length = 221

 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
 Frame = +1

Query: 703  WLLPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVM 882
            W  P   ++K N DGSS+G    G +GI+  D    FLG     +G  T  +AE+   +M
Sbjct: 53   WKPPIGDIVKINCDGSSVGRHPCGSIGIVIRDSNHHFLGAISSNIGNATPLEAEFCAGMM 112

Query: 883  ASEIVVSKRWLHLWIESDLMAVVKAFTNG-KVSWTLKARWM--WAKQTLVHWTIAYIHRE 1053
            A E     + +H+ +E+D + VV AF  G  V W ++ARW   W     +  +  +I RE
Sbjct: 113  AMEKAQEMQLMHVCLETDSLKVVNAFNKGLGVPWQMRARWQNCWDFCDSISCSCVHILRE 172

Query: 1054 GN 1059
            GN
Sbjct: 173  GN 174


>gb|ABN08954.1| Ribonuclease H [Medicago truncatula]
          Length = 175

 Score = 67.8 bits (164), Expect = 6e-09
 Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
 Frame = +1

Query: 721  GVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGITTNFDAEYEGIVMASEIVV 900
            G +K N DGS+ G P  G  G +F ++    LG     +G  T F AE    + A E  +
Sbjct: 9    GRVKINLDGSAFGAPSCGATGGVFRNWQTHSLGGFAQNIGHATCFKAELCAAIFAIEKSI 68

Query: 901  SKRWLHLWIESDLMAVVKAFTNGK-VSWTLKARW--MWAKQTLVHWTIAYIHREGNFG 1065
                  +W+E+D   VVKAF++ + V W L+ RW    A    +     +IHREGN G
Sbjct: 69   EYNLRDIWLETDSKLVVKAFSSSEHVPWQLRTRWNNCLALAQKIKCVCTHIHREGNAG 126


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 66.6 bits (161), Expect = 1e-08
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
 Frame = +1

Query: 667  KNLSAVYWKSIGWLLPNFGVIKANTDGSSIGNPDMGGVGIIFIDYLCQFLGVQVHVLGIT 846
            K++  V WK+     P+  ++K NTDGS +G   +   G +F D    FLG     +G+ 
Sbjct: 1008 KDIILVLWKN-----PSPPLLKVNTDGSVVGG--LAACGGLFRDSSGSFLGAFSCNIGLA 1060

Query: 847  TNFDAEYEGIVMASEIVVSKRWLHLWIESDLMAVVKAFTNGK-VSWTLKARWMWAKQTLV 1023
            + F AE    ++A E      W +LW+ESD  + +  F+N   V W L+ RW  A++  +
Sbjct: 1061 SVFHAETLAFILALEHAAHHGWRNLWLESDSTSALMIFSNSSLVQWLLRNRWHNAQRLGI 1120

Query: 1024 HWTIAYIHREGN 1059
                ++I  EGN
Sbjct: 1121 QVISSHILHEGN 1132