BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000341
         (3454 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144868.1| PREDICTED: heterodimeric geranylgeranyl pyro...   387   e-104
ref|XP_002312936.1| predicted protein [Populus trichocarpa] gi|2...   385   e-104
ref|XP_002529802.1| geranyl geranyl pyrophosphate synthase, puta...   385   e-104
ref|XP_003631564.1| PREDICTED: geranylgeranyl pyrophosphate synt...   380   e-102
ref|XP_003631563.1| PREDICTED: geranylgeranyl pyrophosphate synt...   380   e-102

>ref|XP_004144868.1| PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small
            subunit, chloroplastic-like [Cucumis sativus]
            gi|449508802|ref|XP_004163415.1| PREDICTED: heterodimeric
            geranylgeranyl pyrophosphate synthase small subunit,
            chloroplastic-like [Cucumis sativus]
          Length = 335

 Score =  387 bits (993), Expect = e-104
 Identities = 205/317 (64%), Positives = 234/317 (73%), Gaps = 5/317 (1%)
 Frame = +3

Query: 303  QKPRCRCSSSVSTPMQSQ-----FDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYS 467
            +K   RCSSS S  + SQ     FDLKTYW  LI EIN KLD+++P++YP QIYE+MRYS
Sbjct: 17   RKTPIRCSSSSSPALSSQPQSIHFDLKTYWKQLILEINQKLDEAVPLQYPDQIYEAMRYS 76

Query: 468  VLAHGAKRASPIMCIAVCELFGVSRLAAFPTACALEMVHEASLIHXXXXXXXXXXFRRGR 647
            VLA GAKRA P+MC+A CELFGV RLAAFPTACALEMVHEASLIH           RRG+
Sbjct: 77   VLAQGAKRAPPVMCVAACELFGVDRLAAFPTACALEMVHEASLIHDDLPCMDDDPSRRGQ 136

Query: 648  LSNHAIYGVDMAILAGDALFPLGFQHIVSDTPSSLVPESSILRVIGEIARAVGSTGMVAG 827
             SNH +YGVDMAILAGDALFPLGFQHIVS TP  LVPES +LRV+ EIARAVGS GM AG
Sbjct: 137  PSNHTVYGVDMAILAGDALFPLGFQHIVSHTPFDLVPESRLLRVVAEIARAVGSRGMAAG 196

Query: 828  QFLDLTNAEDSQTEYVQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVV 1007
            QFLDL    +S  E+VQEKKFGE+A+CSAVCGGLL GA D E++RLR+YGRAVGVLYQVV
Sbjct: 197  QFLDLEGGPNS-VEFVQEKKFGEMAQCSAVCGGLLAGAEDHEIQRLRRYGRAVGVLYQVV 255

Query: 1008 XXXXXXXXXXXXXXXXXXXXXXXXXSYAKVVGIEKALEQAEELRSRAKKELDGFEKKYGE 1187
                                     SY +V GIEKA E AEELR++AK EL+GFE KYG+
Sbjct: 256  --DDILEEQSKKLDYTDESKRSKGKSYVEVYGIEKAKEVAEELRAKAKNELEGFE-KYGD 312

Query: 1188 RVNPLYSFVDYAVERNF 1238
            +V PLYSFVDYA +R+F
Sbjct: 313  QVMPLYSFVDYAADRSF 329


>ref|XP_002312936.1| predicted protein [Populus trichocarpa] gi|222849344|gb|EEE86891.1|
            predicted protein [Populus trichocarpa]
          Length = 314

 Score =  385 bits (990), Expect = e-104
 Identities = 205/311 (65%), Positives = 233/311 (74%), Gaps = 1/311 (0%)
 Frame = +3

Query: 318  RCSSSVSTPMQS-QFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYSVLAHGAKRA 494
            +CS SVST  ++ QFDLKTYWTTLI EIN KLDQ++PI+YP +IYE+MRYSVLA GAKRA
Sbjct: 5    QCSLSVSTHSKTPQFDLKTYWTTLILEINQKLDQAVPIQYPDKIYEAMRYSVLAKGAKRA 64

Query: 495  SPIMCIAVCELFGVSRLAAFPTACALEMVHEASLIHXXXXXXXXXXFRRGRLSNHAIYGV 674
             P+MC+A CELFG +R AAFPTACALEMVH ASLIH           RRG+ SNH IYGV
Sbjct: 65   PPVMCVAACELFGGNRHAAFPTACALEMVHSASLIHDDLPCMDDDPSRRGQPSNHKIYGV 124

Query: 675  DMAILAGDALFPLGFQHIVSDTPSSLVPESSILRVIGEIARAVGSTGMVAGQFLDLTNAE 854
            DMAILAGDALFPLGF+HIVS TPS LVPE  +L VI EIARAVGSTGM AGQFLDL    
Sbjct: 125  DMAILAGDALFPLGFRHIVSHTPSDLVPEPRLLSVIAEIARAVGSTGMAAGQFLDLEGGP 184

Query: 855  DSQTEYVQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVXXXXXXXXX 1034
            +S  E+VQEKKFGE+ ECSAVCGGLL GA D+E++RLR+YGRAVGVLYQVV         
Sbjct: 185  NS-VEFVQEKKFGEMGECSAVCGGLLAGAKDDEIQRLRRYGRAVGVLYQVV--DDILEAK 241

Query: 1035 XXXXXXXXXXXXXXXXSYAKVVGIEKALEQAEELRSRAKKELDGFEKKYGERVNPLYSFV 1214
                            SY  + G+EKA+E AEELR++AK+ELDGFE KYGE V PLYSFV
Sbjct: 242  TMKSKVDEDKKKRKGKSYVALYGVEKAIEVAEELRAKAKEELDGFE-KYGESVLPLYSFV 300

Query: 1215 DYAVERNFLIG 1247
            DYA +R F  G
Sbjct: 301  DYAADRGFSFG 311


>ref|XP_002529802.1| geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]
            gi|223530713|gb|EEF32584.1| geranyl geranyl pyrophosphate
            synthase, putative [Ricinus communis]
          Length = 345

 Score =  385 bits (988), Expect = e-104
 Identities = 205/327 (62%), Positives = 240/327 (73%), Gaps = 3/327 (0%)
 Frame = +3

Query: 276  NISNFNFLHQKPRCRCSSSVSTPMQS---QFDLKTYWTTLITEINHKLDQSIPIKYPQQI 446
            N+ + + L  + +C CS +VS   QS   QFDLKTYWTTLI EIN KLDQ+IP+++P+QI
Sbjct: 23   NVHHLSKLGIRIQC-CSPTVSVSSQSKSTQFDLKTYWTTLIAEINQKLDQAIPVQFPEQI 81

Query: 447  YESMRYSVLAHGAKRASPIMCIAVCELFGVSRLAAFPTACALEMVHEASLIHXXXXXXXX 626
            YE+MRYS LA GAKRA P+MC+A CELFG +RLAAFPTACALEMVH ASLIH        
Sbjct: 82   YEAMRYSALAKGAKRAPPVMCVAACELFGGNRLAAFPTACALEMVHTASLIHDDLPCMDD 141

Query: 627  XXFRRGRLSNHAIYGVDMAILAGDALFPLGFQHIVSDTPSSLVPESSILRVIGEIARAVG 806
               RRG+ SNH IYGVDMAILAGDALFPLG++HIVS TP+ LVPE  +LRVI EIARAVG
Sbjct: 142  DPSRRGQPSNHTIYGVDMAILAGDALFPLGYRHIVSHTPTGLVPEPRLLRVIAEIARAVG 201

Query: 807  STGMVAGQFLDLTNAEDSQTEYVQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAV 986
            STGM AGQFLDL     S  E+ QEKK+GE++ECSAVCGGLL GA D+E++RLR+YGRAV
Sbjct: 202  STGMAAGQFLDLEGG-PSFVEFAQEKKYGEMSECSAVCGGLLAGAEDDEIQRLRRYGRAV 260

Query: 987  GVLYQVVXXXXXXXXXXXXXXXXXXXXXXXXXSYAKVVGIEKALEQAEELRSRAKKELDG 1166
            GVLYQV+                         SY  + GIEKA+E AEELR++AKKELDG
Sbjct: 261  GVLYQVI----DDVLEAKAMNKENEEKRRNGKSYVSLYGIEKAMEVAEELRTQAKKELDG 316

Query: 1167 FEKKYGERVNPLYSFVDYAVERNFLIG 1247
            F  KYG+ V PLYSFVDYA +R F IG
Sbjct: 317  F-AKYGDSVMPLYSFVDYAADRGFTIG 342


>ref|XP_003631564.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
            chloroplastic-like isoform 2 [Vitis vinifera]
          Length = 341

 Score =  380 bits (976), Expect = e-102
 Identities = 200/312 (64%), Positives = 233/312 (74%), Gaps = 3/312 (0%)
 Frame = +3

Query: 318  RCSS---SVSTPMQSQFDLKTYWTTLITEINHKLDQSIPIKYPQQIYESMRYSVLAHGAK 488
            RCSS   SVS     QFDL++YWTTLI+EIN KL+++IP+KYPQQIYE+MRYSVLA G K
Sbjct: 32   RCSSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKYPQQIYEAMRYSVLAKGGK 91

Query: 489  RASPIMCIAVCELFGVSRLAAFPTACALEMVHEASLIHXXXXXXXXXXFRRGRLSNHAIY 668
            RA P+MC+AVCELFG  RLAAFPTACALEMVH ASLIH           RRG+ SNH +Y
Sbjct: 92   RAPPVMCVAVCELFGGDRLAAFPTACALEMVHAASLIHDDLPCMDDDPSRRGQPSNHTVY 151

Query: 669  GVDMAILAGDALFPLGFQHIVSDTPSSLVPESSILRVIGEIARAVGSTGMVAGQFLDLTN 848
            GVDMAILAGDALFPLGF+HIVS TPS LVPE  ++RVI EIAR+VGSTGM AGQFLDL  
Sbjct: 152  GVDMAILAGDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIARSVGSTGMAAGQFLDLEG 211

Query: 849  AEDSQTEYVQEKKFGELAECSAVCGGLLGGATDEELERLRKYGRAVGVLYQVVXXXXXXX 1028
            A +S  ++VQ KKFGE+AECSAVCGG LGGA D+++ RLR+YGRAVG+LYQVV       
Sbjct: 212  APNS-VDFVQRKKFGEMAECSAVCGGFLGGAADDDILRLRRYGRAVGMLYQVV----DDV 266

Query: 1029 XXXXXXXXXXXXXXXXXXSYAKVVGIEKALEQAEELRSRAKKELDGFEKKYGERVNPLYS 1208
                              SY  V G+EKA+E AEELR++AK+EL GF+ KYG+ V PLYS
Sbjct: 267  LKAKTKSEEDEEKKKKGKSYVDVYGMEKAMEVAEELRAKAKRELSGFD-KYGDSVVPLYS 325

Query: 1209 FVDYAVERNFLI 1244
            FVD+A ER F I
Sbjct: 326  FVDFAAERGFTI 337


>ref|XP_003631563.1| PREDICTED: geranylgeranyl pyrophosphate synthase-related protein,
            chloroplastic-like isoform 1 [Vitis vinifera]
          Length = 341

 Score =  380 bits (975), Expect = e-102
 Identities = 205/330 (62%), Positives = 241/330 (73%), Gaps = 1/330 (0%)
 Frame = +3

Query: 258  LNPSLINISNFNFLHQKPRCRCSS-SVSTPMQSQFDLKTYWTTLITEINHKLDQSIPIKY 434
            L+  L N S+ N L +  RC   S SVS     QFDL++YWTTLI+EIN KL+++IP+KY
Sbjct: 15   LHHRLPNRSSLN-LPRTIRCTSPSISVSPSKSMQFDLRSYWTTLISEINTKLEEAIPVKY 73

Query: 435  PQQIYESMRYSVLAHGAKRASPIMCIAVCELFGVSRLAAFPTACALEMVHEASLIHXXXX 614
            PQQIYE+MRYSVLA G KRA P+MC+AVCELFG  RLAAFPTACALEMVH ASLIH    
Sbjct: 74   PQQIYEAMRYSVLAKGGKRAPPVMCVAVCELFGGDRLAAFPTACALEMVHAASLIHDDLP 133

Query: 615  XXXXXXFRRGRLSNHAIYGVDMAILAGDALFPLGFQHIVSDTPSSLVPESSILRVIGEIA 794
                   RRG+ SNH +YGVDMAILAGDALFPLGF+HIVS TPS LVPE  ++RVI EIA
Sbjct: 134  CMDDDPSRRGQPSNHTVYGVDMAILAGDALFPLGFRHIVSHTPSHLVPEGQLIRVIAEIA 193

Query: 795  RAVGSTGMVAGQFLDLTNAEDSQTEYVQEKKFGELAECSAVCGGLLGGATDEELERLRKY 974
            R+VGSTGM AGQFLDL  A +S  ++VQ KKFGE+AECSAVCGG LGGA D+++ RLR+Y
Sbjct: 194  RSVGSTGMAAGQFLDLEGAPNS-VDFVQRKKFGEMAECSAVCGGFLGGAADDDILRLRRY 252

Query: 975  GRAVGVLYQVVXXXXXXXXXXXXXXXXXXXXXXXXXSYAKVVGIEKALEQAEELRSRAKK 1154
            GRAVG+LYQVV                         SY  V G+EKA+E AEELR++AK+
Sbjct: 253  GRAVGMLYQVV----DDVLKAKTKSEEDEEKKKKGKSYVDVYGMEKAMEVAEELRAKAKR 308

Query: 1155 ELDGFEKKYGERVNPLYSFVDYAVERNFLI 1244
            EL GF+ KYG+ V PLYSFVD+A ER F I
Sbjct: 309  ELSGFD-KYGDSVVPLYSFVDFAAERGFTI 337