BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000300
         (1919 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase...   793   0.0  
ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase...   790   0.0  
ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase ...   788   0.0  
emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]   788   0.0  
gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]      788   0.0  

>ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
            chloroplastic-like [Vitis vinifera]
            gi|297740331|emb|CBI30513.3| unnamed protein product
            [Vitis vinifera]
          Length = 474

 Score =  793 bits (2047), Expect = 0.0
 Identities = 391/495 (78%), Positives = 433/495 (87%)
 Frame = -1

Query: 1772 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1593
            MAA  STLGAVN A +NL  S TGAS+P+S+F G +LKK +SS   + + SS +FKVV  
Sbjct: 1    MAATISTLGAVNRAPLNLNGSGTGASVPSSAFLGNSLKK-VSSKIAHPRTSSGNFKVVAE 59

Query: 1592 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1413
                    +D+WKGL  D SDDQQDITRGKG+VDSLFQAP  +GTH A+MSSYDYIS GL
Sbjct: 60   VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119

Query: 1412 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1233
            R+YN DN MDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120  RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179

Query: 1232 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1053
            AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180  AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239

Query: 1052 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 873
            TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240  TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299

Query: 872  MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 693
            MEKFYWAPTR+DRIGVCTGIF++DNI  ED++K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300  MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359

Query: 692  WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 513
            W++ VGV+GIGKKLVNSK+GPPTFE+PKMT++KLLEYG M+VQEQ+NVKRVQLADKYL+E
Sbjct: 360  WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419

Query: 512  ASLGEANADAINSGNFFGXXXXXXXXXXXXXXXXXXXGKAAQQVNVPVPEGCTDPSAQNF 333
            A+LG+AN DAI SG+F+                    GKAAQQVN+PVPEGCTDPSA NF
Sbjct: 420  AALGDANEDAIKSGSFY--------------------GKAAQQVNLPVPEGCTDPSANNF 459

Query: 332  DPTARSDNGSCLYEL 288
            DPTARSD+GSCLY++
Sbjct: 460  DPTARSDDGSCLYQI 474


>ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
            chloroplastic isoform 1 [Vitis vinifera]
            gi|297746032|emb|CBI16088.3| unnamed protein product
            [Vitis vinifera]
          Length = 472

 Score =  790 bits (2041), Expect = 0.0
 Identities = 389/493 (78%), Positives = 430/493 (87%)
 Frame = -1

Query: 1772 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1593
            MA   ST+GAVN   ++L SS TGAS+P+S+FFG++LKK +SS +T+ K++S SFKVV  
Sbjct: 1    MATTVSTIGAVNRTPLSLNSSGTGASVPSSAFFGSSLKK-VSSRFTHPKIASGSFKVVAE 59

Query: 1592 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1413
                    +DRWKGL  D+SDDQQDITRGKG+VDSLFQAP  +GTH A+MSSY+Y+S GL
Sbjct: 60   IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119

Query: 1412 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1233
            R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120  RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179

Query: 1232 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1053
            +KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180  SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239

Query: 1052 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 873
            TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240  TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299

Query: 872  MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 693
            MEKFYWAP R+DRIGVC GIF++DN+  +D++KIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300  MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359

Query: 692  WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 513
            WISGVGVD IGKKLVNSK+GPPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+E
Sbjct: 360  WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419

Query: 512  ASLGEANADAINSGNFFGXXXXXXXXXXXXXXXXXXXGKAAQQVNVPVPEGCTDPSAQNF 333
            A+LG+AN D+I  G F+                    GKAAQQV VPVPEGCTDPSA NF
Sbjct: 420  AALGDANVDSIERGTFY--------------------GKAAQQVGVPVPEGCTDPSAANF 459

Query: 332  DPTARSDNGSCLY 294
            DPTARSDNGSC Y
Sbjct: 460  DPTARSDNGSCQY 472


>ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
            precursor, putative [Ricinus communis]
            gi|223536483|gb|EEF38130.1| Ribulose bisphosphate
            carboxylase/oxygenase activase 1, chloroplast precursor,
            putative [Ricinus communis]
          Length = 473

 Score =  788 bits (2036), Expect = 0.0
 Identities = 389/494 (78%), Positives = 427/494 (86%)
 Frame = -1

Query: 1772 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1593
            MAA  ST+GAVN   + L  S  G+S+PTS+FFG++LKK  S  ++  K SS SFKVV  
Sbjct: 1    MAATISTVGAVNRTPLALNGSGAGSSVPTSAFFGSSLKKLNSPRFS--KFSSGSFKVVSE 58

Query: 1592 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1413
                     DRW GL  D+SDDQQDITRGKG+VDSLFQAP  AGTH A+MSSY+Y+S GL
Sbjct: 59   YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118

Query: 1412 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1233
            R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIK+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119  RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178

Query: 1232 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1053
            AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAAD+I+KGKMCCLFINDLDAGAGRMGG
Sbjct: 179  AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238

Query: 1052 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 873
            TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239  TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298

Query: 872  MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 693
            MEKFYWAPTR+DRIGVCTGIFKTD +APEDV+K+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299  MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358

Query: 692  WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 513
            WI GVGV+ IGK LVNSK+GPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKY++E
Sbjct: 359  WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418

Query: 512  ASLGEANADAINSGNFFGXXXXXXXXXXXXXXXXXXXGKAAQQVNVPVPEGCTDPSAQNF 333
            A+LGEAN D+I  G F+                    GKAAQQVN+PVPEGCTDP+AQNF
Sbjct: 419  AALGEANQDSIERGTFY--------------------GKAAQQVNIPVPEGCTDPTAQNF 458

Query: 332  DPTARSDNGSCLYE 291
            DPTARSD+GSC Y+
Sbjct: 459  DPTARSDDGSCTYK 472


>emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
          Length = 472

 Score =  788 bits (2036), Expect = 0.0
 Identities = 388/493 (78%), Positives = 429/493 (87%)
 Frame = -1

Query: 1772 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1593
            MA   ST+GAVN   ++L SS TG S+P+S+FFG++LKK +SS +T+ K++S SFKVV  
Sbjct: 1    MATTVSTIGAVNRTPLSLNSSGTGXSVPSSAFFGSSLKK-VSSRFTHPKIASGSFKVVAE 59

Query: 1592 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1413
                    +DRWKGL  D+SDDQQDITRGKG+VDSLFQAP  +GTH A+MSSY+Y+S GL
Sbjct: 60   IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119

Query: 1412 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1233
            R+YN DNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120  RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179

Query: 1232 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGG 1053
            +KMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGR+GG
Sbjct: 180  SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239

Query: 1052 TTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 873
            TTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240  TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299

Query: 872  MEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVRK 693
            MEKFYWAP R+DRIGVC GIF++DN+  +D++KIVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300  MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359

Query: 692  WISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLNE 513
            WISGVGVD IGKKLVNSK+GPPTFEQPKMT+EKLLEYG M+V EQ+NVKRVQLADKYL+E
Sbjct: 360  WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419

Query: 512  ASLGEANADAINSGNFFGXXXXXXXXXXXXXXXXXXXGKAAQQVNVPVPEGCTDPSAQNF 333
            A+LG+AN D+I  G F+                    GKAAQQV VPVPEGCTDPSA NF
Sbjct: 420  AALGDANVDSIERGTFY--------------------GKAAQQVGVPVPEGCTDPSAANF 459

Query: 332  DPTARSDNGSCLY 294
            DPTARSDNGSC Y
Sbjct: 460  DPTARSDNGSCQY 472


>gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 476

 Score =  788 bits (2035), Expect = 0.0
 Identities = 389/495 (78%), Positives = 430/495 (86%), Gaps = 1/495 (0%)
 Frame = -1

Query: 1772 MAAPFSTLGAVNSALVNLPSSNTGASLPTSSFFGTNLKKAISSGYTNQKVSSRSFKVVXX 1593
            MAA  ST+GAVN+A + L  S  G+++P S+FFG +LKK  SS +TN K+SS SFKVV  
Sbjct: 1    MAATISTVGAVNTAPLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVAE 60

Query: 1592 XXXXXXKGQDRWKGLGTDISDDQQDITRGKGLVDSLFQAPSGAGTHDAIMSSYDYISQGL 1413
                    +DRW GL TD+SDDQQDITRGKG+VDSLFQAP G GTH+ I+SSY+Y+SQGL
Sbjct: 61   YDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQGL 120

Query: 1412 REYNFDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 1233
            R YN DNNMDG+YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVF
Sbjct: 121  RTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVF 180

Query: 1232 AKMGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIRK-GKMCCLFINDLDAGAGRMG 1056
            AKMG+NPIMMSAGELESGNAGEPAKLIRQRYREAADII+K GKMCCLFINDLDAGAGR+G
Sbjct: 181  AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLG 240

Query: 1055 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 876
            GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 241  GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 300

Query: 875  RMEKFYWAPTRDDRIGVCTGIFKTDNIAPEDVIKIVDTFPGQSIDFFGALRARVYDDEVR 696
            RMEKFYWAPTRDDRIGVC GIFK+D IA ED++K+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 301  RMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 360

Query: 695  KWISGVGVDGIGKKLVNSKDGPPTFEQPKMTVEKLLEYGYMIVQEQDNVKRVQLADKYLN 516
            KWISGVGVD IGKKLVNS+DGPPTFEQPKMT+EKLLEYG M+VQEQ+NVKRVQLADKYL+
Sbjct: 361  KWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLS 420

Query: 515  EASLGEANADAINSGNFFGXXXXXXXXXXXXXXXXXXXGKAAQQVNVPVPEGCTDPSAQN 336
            EASLGEAN D+I+ G F+                    G+AAQQV VPV EGCTDP+A N
Sbjct: 421  EASLGEANQDSIDRGTFY--------------------GQAAQQVKVPVAEGCTDPNAAN 460

Query: 335  FDPTARSDNGSCLYE 291
            FDPTARSD+GSC Y+
Sbjct: 461  FDPTARSDDGSCTYK 475