BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000297
         (681 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic ...   273   2e-71
ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [...   272   4e-71
ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, p...   271   1e-70
ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|2...   270   2e-70
ref|XP_002889682.1| EMB2284/POL2A/TIL1 [Arabidopsis lyrata subsp...   263   2e-68

>ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis
           vinifera]
          Length = 2214

 Score =  273 bits (699), Expect = 2e-71
 Identities = 135/186 (72%), Positives = 156/186 (83%)
 Frame = +3

Query: 123 RDQKRDYRNPKKQKLFRTAEEEREAKFGFDIFSQGDKRLGWLLTFSSSSWEDQDTRRVYS 302
           R  + D    KKQKL R AEEE E+K G D+FS+G+KRLGWLLTF+SSSWED++T +VYS
Sbjct: 7   RRDRADVWKHKKQKLIRNAEEEVESKLGLDLFSEGEKRLGWLLTFASSSWEDEETHKVYS 66

Query: 303 CVDLYFVTQDGSNFKCKYRFKPYFYAATKDGTEMGVETYLKRRYEGQIADIELTRKEDLN 482
           CVDLYFV+QDGS+FK KY+F+PYFYAATKD  EM VE YL+RRYEGQIADIE+  KEDL+
Sbjct: 67  CVDLYFVSQDGSSFKSKYKFRPYFYAATKDKMEMDVEAYLRRRYEGQIADIEIMYKEDLD 126

Query: 483 LKNHLSGLQKSYLKISFDTVQQLMLVRNDLLPVVQRNQEKIDTAEAYESILTGKSNQRHQ 662
           LKNHLSGL KSYLKISFD VQQLM V++DLL VV+RN+ K D AEAYESILTGKS QR Q
Sbjct: 127 LKNHLSGLCKSYLKISFDNVQQLMHVKSDLLHVVERNRAKFDAAEAYESILTGKSKQRTQ 186

Query: 663 DFIECI 680
           DFI+ I
Sbjct: 187 DFIDYI 192


>ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [Medicago truncatula]
           gi|355507282|gb|AES88424.1| DNA polymerase epsilon
           catalytic subunit A [Medicago truncatula]
          Length = 2248

 Score =  272 bits (696), Expect = 4e-71
 Identities = 130/191 (68%), Positives = 161/191 (84%)
 Frame = +3

Query: 108 MNKNWRDQKRDYRNPKKQKLFRTAEEEREAKFGFDIFSQGDKRLGWLLTFSSSSWEDQDT 287
           MN+ W   +RD +  KKQKL  +AEEE EAK GFD+FS+G+KRLGWLLTFSSSS+ED+DT
Sbjct: 1   MNRKW--DRRDNKVSKKQKLLNSAEEELEAKLGFDLFSEGEKRLGWLLTFSSSSYEDEDT 58

Query: 288 RRVYSCVDLYFVTQDGSNFKCKYRFKPYFYAATKDGTEMGVETYLKRRYEGQIADIELTR 467
            +VYSC+DLYFV QDGS+FK KYRF+PYFY ATK+  EM V+ YL+RRYE QIADI++  
Sbjct: 59  GKVYSCIDLYFVKQDGSSFKTKYRFRPYFYVATKNKMEMDVDAYLRRRYESQIADIKIVE 118

Query: 468 KEDLNLKNHLSGLQKSYLKISFDTVQQLMLVRNDLLPVVQRNQEKIDTAEAYESILTGKS 647
           KEDL+LKNHLSGL+KSYL++SFDTVQQLM V++DL+ VV+RN+ K D AEAYESILTG+ 
Sbjct: 119 KEDLDLKNHLSGLRKSYLRLSFDTVQQLMNVKSDLMQVVERNKAKSDAAEAYESILTGRR 178

Query: 648 NQRHQDFIECI 680
            Q+ QDF++CI
Sbjct: 179 EQKLQDFLDCI 189


>ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus
           communis] gi|223531477|gb|EEF33309.1| DNA polymerase
           epsilon, catalytic subunit, putative [Ricinus communis]
          Length = 2227

 Score =  271 bits (692), Expect = 1e-70
 Identities = 129/186 (69%), Positives = 157/186 (84%)
 Frame = +3

Query: 123 RDQKRDYRNPKKQKLFRTAEEEREAKFGFDIFSQGDKRLGWLLTFSSSSWEDQDTRRVYS 302
           RD+    R+ KKQKL R AEEE ++K GFD+F++GDKRLGWLLTF+SSSWED++TRRV+S
Sbjct: 9   RDRNNYNRSSKKQKLIRNAEEELDSKLGFDLFTEGDKRLGWLLTFASSSWEDEETRRVHS 68

Query: 303 CVDLYFVTQDGSNFKCKYRFKPYFYAATKDGTEMGVETYLKRRYEGQIADIELTRKEDLN 482
           CVDLYFV+QDGS FK K++F+PYFYAATK+  EM VE YL+RRYE QIADIE+  KEDL+
Sbjct: 69  CVDLYFVSQDGSAFKSKFKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEIVEKEDLD 128

Query: 483 LKNHLSGLQKSYLKISFDTVQQLMLVRNDLLPVVQRNQEKIDTAEAYESILTGKSNQRHQ 662
           LKNHLSGL+K YLKISF TVQQLM V+ DL  VV+RN+ K DTA+AYES+LTG+  QR Q
Sbjct: 129 LKNHLSGLRKRYLKISFSTVQQLMDVKKDLSHVVERNRAKFDTADAYESLLTGRREQRPQ 188

Query: 663 DFIECI 680
           DF++CI
Sbjct: 189 DFLDCI 194


>ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1|
           predicted protein [Populus trichocarpa]
          Length = 2221

 Score =  270 bits (690), Expect = 2e-70
 Identities = 136/190 (71%), Positives = 158/190 (83%)
 Frame = +3

Query: 111 NKNWRDQKRDYRNPKKQKLFRTAEEEREAKFGFDIFSQGDKRLGWLLTFSSSSWEDQDTR 290
           ++ W D+K   R+ KKQKL RTAEEE E+K GFD+F++GDKRLGWLLTFSSSS +D++T 
Sbjct: 5   SRRW-DRKDLRRSSKKQKLMRTAEEELESKLGFDLFTEGDKRLGWLLTFSSSSLDDEETG 63

Query: 291 RVYSCVDLYFVTQDGSNFKCKYRFKPYFYAATKDGTEMGVETYLKRRYEGQIADIELTRK 470
           RVYSCVDLYFV+QDGS FK KY+F+PYFYAATK+  EM VE YL+RRYE QIA IE+  K
Sbjct: 64  RVYSCVDLYFVSQDGSAFKSKYKFRPYFYAATKEKMEMDVEGYLRRRYESQIAYIEIVEK 123

Query: 471 EDLNLKNHLSGLQKSYLKISFDTVQQLMLVRNDLLPVVQRNQEKIDTAEAYESILTGKSN 650
           EDL+LKNHLSGL KSYLKISF TVQQLM V+ DLL VV+RNQ K D AEAYESILTGK  
Sbjct: 124 EDLDLKNHLSGLHKSYLKISFATVQQLMDVKRDLLHVVERNQAKSDAAEAYESILTGKRE 183

Query: 651 QRHQDFIECI 680
           QR QDF++CI
Sbjct: 184 QRPQDFLDCI 193


>ref|XP_002889682.1| EMB2284/POL2A/TIL1 [Arabidopsis lyrata subsp. lyrata]
           gi|297335524|gb|EFH65941.1| EMB2284/POL2A/TIL1
           [Arabidopsis lyrata subsp. lyrata]
          Length = 2241

 Score =  263 bits (672), Expect = 2e-68
 Identities = 129/192 (67%), Positives = 152/192 (79%)
 Frame = +3

Query: 105 MMNKNWRDQKRDYRNPKKQKLFRTAEEEREAKFGFDIFSQGDKRLGWLLTFSSSSWEDQD 284
           M   N R  ++D R  KK K+  TAE+E E+K GF +FS+G+ RLGWLLTFSSSSWED+D
Sbjct: 1   MSGDNRRRDRKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRD 60

Query: 285 TRRVYSCVDLYFVTQDGSNFKCKYRFKPYFYAATKDGTEMGVETYLKRRYEGQIADIELT 464
           T +VYSCVDLYFVTQDG +FK KY+F+PYFYAATKD  E+ VE YL+RRYE Q+ADIE+ 
Sbjct: 61  TGKVYSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELEVEAYLRRRYERQVADIEIV 120

Query: 465 RKEDLNLKNHLSGLQKSYLKISFDTVQQLMLVRNDLLPVVQRNQEKIDTAEAYESILTGK 644
            KEDL+LKNHLSGLQK YLKISFDTVQQLM V+ DLL +V+RNQ K D  EAYESIL GK
Sbjct: 121 EKEDLDLKNHLSGLQKKYLKISFDTVQQLMEVKRDLLHIVERNQAKFDALEAYESILAGK 180

Query: 645 SNQRHQDFIECI 680
             QR QD ++ I
Sbjct: 181 REQRPQDCLDSI 192