BLASTX nr result
ID: Coptis24_contig00000285
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00000285
(2448 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002270874.1| PREDICTED: F-box protein SKIP14 [Vitis vinif... 357 1e-95
emb|CBI40086.3| unnamed protein product [Vitis vinifera] 350 1e-93
ref|XP_002266763.1| PREDICTED: F-box protein SKIP14 [Vitis vinif... 345 4e-92
ref|XP_002315636.1| predicted protein [Populus trichocarpa] gi|2... 344 6e-92
ref|XP_002514971.1| conserved hypothetical protein [Ricinus comm... 331 5e-88
>ref|XP_002270874.1| PREDICTED: F-box protein SKIP14 [Vitis vinifera]
Length = 480
Score = 357 bits (915), Expect = 1e-95
Identities = 217/496 (43%), Positives = 275/496 (55%), Gaps = 14/496 (2%)
Frame = +1
Query: 154 FVKDFPEKNAVSGFSGYGKLNSLDCWKD------------AAPVESVSTDIIERLPPDPF 297
FV F +K+ G+G L ++DC D E+VS DI++RLP DPF
Sbjct: 23 FVDGFGDKS----LDGFGNLLNMDCESDNPQDRRMGKSEKEGSCEAVSDDIVDRLPADPF 78
Query: 298 GMGIGATFTAITGWVEDFDPDEFNMFLNKTLKFQTETGSMEFCRRSNLSDTLDGNVDKLS 477
M I TFTA GWV DF+ D + G ME L N++ +
Sbjct: 79 NMDIRTTFTAFKGWVGDFEKDSIGFGV----------GEMEAMEAEGEDRGLYANLNLVW 128
Query: 478 IGLRQDGCALIPDADKSLSFNCEDMHVISHQCLQSRERIGSSRGVDEGASRDGFALITDA 657
G + +A+KS+ N D ++ D+ GF+
Sbjct: 129 SGAMRFQPEF-SNAEKSVPCNEFDGLLM-----------------DKDLCDGGFS----- 165
Query: 658 DKLLSFNCEDMSASSHQSEQSGEGTGTCHGVDEGAPNDGLLFALGYLCVWDLLSTERVCN 837
+ LSF+ + +Q ++ T + G P+D L F+L YL V DLL ERVC
Sbjct: 166 -EFLSFSRHGNRINGNQEKEFQACTKVHPDDETGEPHDALFFSLAYLGVQDLLVVERVCR 224
Query: 838 SLRSAIQTDVLLWRNIHIDQSLSMKITDDALLRLSNRAQXXXXXXXXXXXXRITDNGLKR 1017
SL + +++D LLWRNI IDQ LS KITDDALL+L+ RAQ RITD+GLKR
Sbjct: 225 SLCNVVRSDPLLWRNICIDQPLSDKITDDALLQLTGRAQGSLQGLSLVQCPRITDSGLKR 284
Query: 1018 VLECNPKLKKLNVAGCIGLSIDGIVNNLKDFKSSGTLGIKHLRIGGRYGVNHKHFEELKS 1197
VLE NP+L KL V GC+ LS+D I+ NLK FKS+GTLGIKHLRI G GV +HFEELK
Sbjct: 285 VLENNPRLTKLCVPGCVRLSVDCILLNLKAFKSAGTLGIKHLRISGLNGVTDQHFEELKL 344
Query: 1198 LISADNCMQSKATKPRFYPYGHSSPSCEDDHAIDIEICPRCQNMRLVYDCPAESCQEKEP 1377
L+ DN Q + KPRFY SC+DD AIDIE+CPRCQ +RLVYDCP+ESCQ K
Sbjct: 345 LLGVDNHKQLRTHKPRFYHGEQLYLSCDDDRAIDIEVCPRCQKVRLVYDCPSESCQGKHQ 404
Query: 1378 GAQXXXXXXXXXXXXVECGRCLNDSEYEETFCLDVLCLDCWQQLLSCQKGQEK--GTYLE 1551
AQ CGRC+ND +YEETFCLD+LCLDC++QLL+CQ+ QE+ +
Sbjct: 405 SAQLCRACTLCIARCFHCGRCINDCDYEETFCLDLLCLDCFKQLLNCQERQEEMGAPSSK 464
Query: 1552 HTIFHHETRYCFQLCG 1599
HTIFH ETRY F L G
Sbjct: 465 HTIFHQETRYRFCLYG 480
>emb|CBI40086.3| unnamed protein product [Vitis vinifera]
Length = 489
Score = 350 bits (898), Expect = 1e-93
Identities = 214/494 (43%), Positives = 272/494 (55%), Gaps = 14/494 (2%)
Frame = +1
Query: 154 FVKDFPEKNAVSGFSGYGKLNSLDCWKD------------AAPVESVSTDIIERLPPDPF 297
FV F +K+ G+G L ++DC D E+VS DI++RLP DPF
Sbjct: 23 FVDGFGDKS----LDGFGNLLNMDCESDNPQDRRMGKSEKEGSCEAVSDDIVDRLPADPF 78
Query: 298 GMGIGATFTAITGWVEDFDPDEFNMFLNKTLKFQTETGSMEFCRRSNLSDTLDGNVDKLS 477
M I TFTA GWV DF+ D + G ME L N++ +
Sbjct: 79 NMDIRTTFTAFKGWVGDFEKDSIGFGV----------GEMEAMEAEGEDRGLYANLNLVW 128
Query: 478 IGLRQDGCALIPDADKSLSFNCEDMHVISHQCLQSRERIGSSRGVDEGASRDGFALITDA 657
G + +A+KS+ N D ++ D+ GF+
Sbjct: 129 SGAMRFQPEF-SNAEKSVPCNEFDGLLM-----------------DKDLCDGGFS----- 165
Query: 658 DKLLSFNCEDMSASSHQSEQSGEGTGTCHGVDEGAPNDGLLFALGYLCVWDLLSTERVCN 837
+ LSF+ + +Q ++ T + G P+D L F+L YL V DLL ERVC
Sbjct: 166 -EFLSFSRHGNRINGNQEKEFQACTKVHPDDETGEPHDALFFSLAYLGVQDLLVVERVCR 224
Query: 838 SLRSAIQTDVLLWRNIHIDQSLSMKITDDALLRLSNRAQXXXXXXXXXXXXRITDNGLKR 1017
SL + +++D LLWRNI IDQ LS KITDDALL+L+ RAQ RITD+GLKR
Sbjct: 225 SLCNVVRSDPLLWRNICIDQPLSDKITDDALLQLTGRAQGSLQGLSLVQCPRITDSGLKR 284
Query: 1018 VLECNPKLKKLNVAGCIGLSIDGIVNNLKDFKSSGTLGIKHLRIGGRYGVNHKHFEELKS 1197
VLE NP+L KL V GC+ LS+D I+ NLK FKS+GTLGIKHLRI G GV +HFEELK
Sbjct: 285 VLENNPRLTKLCVPGCVRLSVDCILLNLKAFKSAGTLGIKHLRISGLNGVTDQHFEELKL 344
Query: 1198 LISADNCMQSKATKPRFYPYGHSSPSCEDDHAIDIEICPRCQNMRLVYDCPAESCQEKEP 1377
L+ DN Q + KPRFY SC+DD AIDIE+CPRCQ +RLVYDCP+ESCQ K
Sbjct: 345 LLGVDNHKQLRTHKPRFYHGEQLYLSCDDDRAIDIEVCPRCQKVRLVYDCPSESCQGKHQ 404
Query: 1378 GAQXXXXXXXXXXXXVECGRCLNDSEYEETFCLDVLCLDCWQQLLSCQKGQEK--GTYLE 1551
AQ CGRC+ND +YEETFCLD+LCLDC++QLL+CQ+ QE+ +
Sbjct: 405 SAQLCRACTLCIARCFHCGRCINDCDYEETFCLDLLCLDCFKQLLNCQERQEEMGAPSSK 464
Query: 1552 HTIFHHETRYCFQL 1593
HTIFH ET F L
Sbjct: 465 HTIFHQETSIPFLL 478
>ref|XP_002266763.1| PREDICTED: F-box protein SKIP14 [Vitis vinifera]
Length = 458
Score = 345 bits (884), Expect = 4e-92
Identities = 197/445 (44%), Positives = 250/445 (56%), Gaps = 20/445 (4%)
Frame = +1
Query: 250 ESVSTDIIERLPPDPFGMGIGATFTAITGWVEDFDPDE--------------------FN 369
ESVS DI++ LP DPFGM I TFTAITGW+ED + D N
Sbjct: 50 ESVSNDILDLLPSDPFGMDISTTFTAITGWLEDLEVDYGGYGTDEIGTSQGNYELFAGLN 109
Query: 370 MFLNKTLKFQTETGSMEFCRRSNLSDTLDGNVDKLSIGLRQDGCALIPDADKSLSFNCED 549
N ++FQ G +S+++ G ++ + AD S +NC
Sbjct: 110 FIWNNAMRFQALPGKAWLDDKSDIACGFGGFTEEKEV------------ADPS--YNCR- 154
Query: 550 MHVISHQCLQSRERIGSSRGVDEGASRDGFALITDADKLLSFNCEDMSASSHQSEQSGEG 729
F I + +LS E++ +S Q+E+ E
Sbjct: 155 -----------------------------FGPICVVEDVLSSGNENVCGASCQAEEFREF 185
Query: 730 TGTCHGVDEGAPNDGLLFALGYLCVWDLLSTERVCNSLRSAIQTDVLLWRNIHIDQSLSM 909
G+C+ D AP+ + FALGYL + DLLS ERVC SLR+ +Q+D LLWR+IH+DQ L+
Sbjct: 186 NGSCYDGDGAAPHAAVSFALGYLGLRDLLSVERVCRSLRATVQSDPLLWRSIHVDQPLNE 245
Query: 910 KITDDALLRLSNRAQXXXXXXXXXXXXRITDNGLKRVLECNPKLKKLNVAGCIGLSIDGI 1089
+ITDD LL+L+ RAQ RITD+GLKRVLE NP+L KL V GC LSI+G+
Sbjct: 246 RITDDILLQLTRRAQGNLQGLHLVECPRITDDGLKRVLESNPRLTKLCVPGCTRLSIEGV 305
Query: 1090 VNNLKDFKSSGTLGIKHLRIGGRYGVNHKHFEELKSLISADNCMQSKATKPRFYPYGHSS 1269
VN L+ F+S+GT GIKHLRIGG YGV HKHFEELK L+ D Q A KP FY G+
Sbjct: 306 VNMLRAFQSTGTPGIKHLRIGGLYGVAHKHFEELKLLLGIDIHEQKNAHKPHFYNRGNFY 365
Query: 1270 PSCEDDHAIDIEICPRCQNMRLVYDCPAESCQEKEPGAQXXXXXXXXXXXXVECGRCLND 1449
+DD AIDIE CPRCQN+RLVYDCPA+ CQ KE AQ V+CGRC+ND
Sbjct: 366 LLGDDDRAIDIETCPRCQNLRLVYDCPADGCQVKENAAQVCRACTLCIARCVQCGRCIND 425
Query: 1450 SEYEETFCLDVLCLDCWQQLLSCQK 1524
EYEETFCL+ LC DC++Q CQ+
Sbjct: 426 GEYEETFCLEWLCSDCFKQQPQCQE 450
>ref|XP_002315636.1| predicted protein [Populus trichocarpa] gi|222864676|gb|EEF01807.1|
predicted protein [Populus trichocarpa]
Length = 449
Score = 344 bits (883), Expect = 6e-92
Identities = 199/443 (44%), Positives = 249/443 (56%), Gaps = 20/443 (4%)
Frame = +1
Query: 250 ESVSTDIIERLPPDPFGMGIGATFTAITGWVEDFDPD--------------------EFN 369
ESV DI++ LP DPFGM I TFTA+TGW+ED + D + N
Sbjct: 46 ESVHKDILDLLPSDPFGMDISTTFTAVTGWLEDLEVDYGGYGRDRVSTRDGNYQLFADLN 105
Query: 370 MFLNKTLKFQTETGSMEFCRRSNLSDTLDGNVDKLSIGLRQDGCALIPDADKSLSFNCED 549
N + FQ G+M F +LS+ + G D+ S +
Sbjct: 106 FICNNAMWFQQFPGNMGF----DLSNVVGGYGDERS--------------------EANE 141
Query: 550 MHVISHQCLQSRERIGSSRGVDEGASRDGFALITDADKLLSFNCEDMSASSHQSEQSGEG 729
+ HQ E GS +++ S G +I + E + S + G
Sbjct: 142 VGNAPHQ-----EAPGSDCDMEDVLS-PGNEIIDN---------ETVGVVDESSGEFQNG 186
Query: 730 TGTCHGVDEGAPNDGLLFALGYLCVWDLLSTERVCNSLRSAIQTDVLLWRNIHIDQSLSM 909
C D+ AP+ FALGYL V DLL E VC SLRS +Q+D LLWR+IHIDQ L+
Sbjct: 187 HLVCSEGDKEAPHAAFAFALGYLGVRDLLVVETVCRSLRSTVQSDPLLWRSIHIDQPLNE 246
Query: 910 KITDDALLRLSNRAQXXXXXXXXXXXXRITDNGLKRVLECNPKLKKLNVAGCIGLSIDGI 1089
KITDD LL+L+NRAQ RITD+GLK VLE NP+L KL+V C LSI+GI
Sbjct: 247 KITDDVLLQLTNRAQGNLQCLSLVECPRITDDGLKHVLENNPRLTKLSVPACTRLSIEGI 306
Query: 1090 VNNLKDFKSSGTLGIKHLRIGGRYGVNHKHFEELKSLISADNCMQSKATKPRFYPYGHSS 1269
V +LK FK++GT G+KHLRIGG YGV KHFEEL L+ D+ +Q A KP FY G+
Sbjct: 307 VTSLKAFKATGTHGVKHLRIGGLYGVTQKHFEELMFLLGPDSHIQQNAHKPHFYHRGNLY 366
Query: 1270 PSCEDDHAIDIEICPRCQNMRLVYDCPAESCQEKEPGAQXXXXXXXXXXXXVECGRCLND 1449
SCEDD AIDIE+CPRCQN+RL+YDCP E CQ KE +Q V+CGRC+ND
Sbjct: 367 LSCEDDRAIDIEMCPRCQNLRLIYDCPVEGCQGKEHPSQACRACSLCIARCVQCGRCIND 426
Query: 1450 SEYEETFCLDVLCLDCWQQLLSC 1518
SEYEETFCL++LC DCW+QLL C
Sbjct: 427 SEYEETFCLELLCSDCWKQLLKC 449
>ref|XP_002514971.1| conserved hypothetical protein [Ricinus communis]
gi|223546022|gb|EEF47525.1| conserved hypothetical
protein [Ricinus communis]
Length = 483
Score = 331 bits (849), Expect = 5e-88
Identities = 189/447 (42%), Positives = 244/447 (54%), Gaps = 20/447 (4%)
Frame = +1
Query: 250 ESVSTDIIERLPPDPFGMGIGATFTAITGWVEDFDPDE--------------------FN 369
ESV DI++ LP DPFGM I TFTA+TGW+ED + D N
Sbjct: 57 ESVHKDILDLLPSDPFGMDISTTFTALTGWLEDLEMDYTGYSSDQVATSDGSYQLFAGLN 116
Query: 370 MFLNKTLKFQTETGSMEFCRRSNLSDTLDGNVDKLSIGLRQDGCALIPDADKSLSFNCED 549
+ ++FQ GSM F RSN + +L CA ++ N E+
Sbjct: 117 FIWSNAMRFQNFPGSMRFDCRSNAAGGFCDGCLELEGTCASGPCAF------GVTCNLEN 170
Query: 550 MHVISHQCLQSRERIGSSRGVDEGASRDGFALITDADKLLSFNCEDMSASSHQSEQSGEG 729
+ + ++ + +++ + S SH+ G
Sbjct: 171 IFSLGNELVGNKD----------------------------VGIMERSEESHEVSSDG-- 200
Query: 730 TGTCHGVDEGAPNDGLLFALGYLCVWDLLSTERVCNSLRSAIQTDVLLWRNIHIDQSLSM 909
D GAP+ L FAL +L V DLL E VC SLR ++ D LLWR+ HIDQ L+
Sbjct: 201 -------DVGAPHSALGFALAFLGVRDLLVVETVCRSLRWTVRNDPLLWRSFHIDQPLNE 253
Query: 910 KITDDALLRLSNRAQXXXXXXXXXXXXRITDNGLKRVLECNPKLKKLNVAGCIGLSIDGI 1089
KITDD LL+L+NRAQ RITD+GLK+VLE NP++ KL+V GC LSI+GI
Sbjct: 254 KITDDVLLQLTNRAQGTLQCLSLVECPRITDDGLKQVLENNPRITKLSVPGCTRLSIEGI 313
Query: 1090 VNNLKDFKSSGTLGIKHLRIGGRYGVNHKHFEELKSLISADNCMQSKATKPRFYPYGHSS 1269
V++LK K+ GT +KHLRIGG YGV +HFEELK L+ D MQ A KP FY +
Sbjct: 314 VSSLKALKAMGTQRVKHLRIGGIYGVTQEHFEELKFLLGTDGHMQQNAHKPHFYHRENLY 373
Query: 1270 PSCEDDHAIDIEICPRCQNMRLVYDCPAESCQEKEPGAQXXXXXXXXXXXXVECGRCLND 1449
SCEDD IDIE+CPRCQN+RLVYDCPAE CQ+KE +Q +CG C+ND
Sbjct: 374 LSCEDDRTIDIEMCPRCQNLRLVYDCPAEGCQQKEHSSQACRGCTLCIARCSQCGCCIND 433
Query: 1450 SEYEETFCLDVLCLDCWQQLLSCQKGQ 1530
SEYEETFCL++LC DC++QLL CQ+ Q
Sbjct: 434 SEYEETFCLELLCSDCYKQLLKCQEKQ 460