BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000258
         (1058 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   429   e-118
ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis...   427   e-117
ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [...   425   e-116
gb|ACF06499.1| ribosomal protein [Elaeis guineensis]                  422   e-116
gb|ABK95963.1| unknown [Populus trichocarpa]                          420   e-115

>ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297743020|emb|CBI35887.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  429 bits (1102), Expect = e-118
 Identities = 219/234 (93%), Positives = 226/234 (96%), Gaps = 1/234 (0%)
 Frame = -3

Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781
           M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601
           EKGRRIRELTSVVQKRFKFPEN+VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMAPEIDVAAA 262
           VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP + A +I+VAAA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVAAA 234


>ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera]
           gi|297738588|emb|CBI27833.3| unnamed protein product
           [Vitis vinifera]
          Length = 234

 Score =  427 bits (1098), Expect = e-117
 Identities = 218/234 (93%), Positives = 224/234 (95%), Gaps = 1/234 (0%)
 Frame = -3

Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781
           M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACY 120

Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421
           GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMAPEIDVAAA 262
           VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP  +A +I+V  A
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVPTA 234


>ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus]
           gi|449521735|ref|XP_004167885.1| PREDICTED: 40S
           ribosomal protein S3-3-like [Cucumis sativus]
          Length = 236

 Score =  425 bits (1092), Expect = e-116
 Identities = 219/236 (92%), Positives = 225/236 (95%), Gaps = 3/236 (1%)
 Frame = -3

Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781
           M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601
           EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEE-YVRPALMAP--EIDVAAA 262
           VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK+EE ++RP  + P  EI+V AA
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHSPKEEEDFIRPVAVIPTTEIEVGAA 236


>gb|ACF06499.1| ribosomal protein [Elaeis guineensis]
          Length = 235

 Score =  422 bits (1085), Expect = e-116
 Identities = 217/235 (92%), Positives = 223/235 (94%), Gaps = 2/235 (0%)
 Frame = -3

Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781
           M TQMSKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601
           EKGRRIRELTSVVQKRF FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFSFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMIS GQPV EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISCGQPVKEYIDSAVRHVLLRQG 180

Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKD-EEYVRPAL-MAPEIDVAAA 262
           VLGIKVKIMLDWDPKGKQGP TPLPDL +IH PKD EEY+RP L MAPE++V  A
Sbjct: 181 VLGIKVKIMLDWDPKGKQGPATPLPDLASIHTPKDEEEYMRPPLTMAPELEVPVA 235


>gb|ABK95963.1| unknown [Populus trichocarpa]
          Length = 232

 Score =  420 bits (1080), Expect = e-115
 Identities = 214/233 (91%), Positives = 221/233 (94%)
 Frame = -3

Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781
           M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG
Sbjct: 1   MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60

Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601
           EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61  EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120

Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421
           GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180

Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEEYVRPALMAPEIDVAAA 262
           VLGIKVKIMLDWDPKGK GPMTPLPDLVTIH PK+EEYV P +M   I++  A
Sbjct: 181 VLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEYV-PPVMTTNIEIPVA 232