BLASTX nr result
ID: Coptis24_contig00000258
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000258 (1058 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis... 429 e-118 ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis... 427 e-117 ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [... 425 e-116 gb|ACF06499.1| ribosomal protein [Elaeis guineensis] 422 e-116 gb|ABK95963.1| unknown [Populus trichocarpa] 420 e-115 >ref|XP_002275541.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera] gi|297743020|emb|CBI35887.3| unnamed protein product [Vitis vinifera] Length = 234 Score = 429 bits (1102), Expect = e-118 Identities = 219/234 (93%), Positives = 226/234 (96%), Gaps = 1/234 (0%) Frame = -3 Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781 M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601 EKGRRIRELTSVVQKRFKFPEN+VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSVVQKRFKFPENTVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421 GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180 Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMAPEIDVAAA 262 VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP + A +I+VAAA Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYLRPPIPAADIEVAAA 234 >ref|XP_002279950.1| PREDICTED: 40S ribosomal protein S3-3 [Vitis vinifera] gi|297738588|emb|CBI27833.3| unnamed protein product [Vitis vinifera] Length = 234 Score = 427 bits (1098), Expect = e-117 Identities = 218/234 (93%), Positives = 224/234 (95%), Gaps = 1/234 (0%) Frame = -3 Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781 M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCA+AQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAVAQAESLRYKLLGGLAVRRACY 120 Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG Sbjct: 121 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180 Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPK-DEEYVRPALMAPEIDVAAA 262 VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK +EEY+RP +A +I+V A Sbjct: 181 VLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHTPKEEEEYIRPEKLATDIEVPTA 234 >ref|XP_004141698.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus] gi|449521735|ref|XP_004167885.1| PREDICTED: 40S ribosomal protein S3-3-like [Cucumis sativus] Length = 236 Score = 425 bits (1092), Expect = e-116 Identities = 219/236 (92%), Positives = 225/236 (95%), Gaps = 3/236 (1%) Frame = -3 Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781 M TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421 GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180 Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEE-YVRPALMAP--EIDVAAA 262 VLGIKVKIMLDWDPKGKQGP TPLPDLVTIH PK+EE ++RP + P EI+V AA Sbjct: 181 VLGIKVKIMLDWDPKGKQGPPTPLPDLVTIHSPKEEEDFIRPVAVIPTTEIEVGAA 236 >gb|ACF06499.1| ribosomal protein [Elaeis guineensis] Length = 235 Score = 422 bits (1085), Expect = e-116 Identities = 217/235 (92%), Positives = 223/235 (94%), Gaps = 2/235 (0%) Frame = -3 Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781 M TQMSKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601 EKGRRIRELTSVVQKRF FPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSVVQKRFSFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421 GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMIS GQPV EYIDSAVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISCGQPVKEYIDSAVRHVLLRQG 180 Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKD-EEYVRPAL-MAPEIDVAAA 262 VLGIKVKIMLDWDPKGKQGP TPLPDL +IH PKD EEY+RP L MAPE++V A Sbjct: 181 VLGIKVKIMLDWDPKGKQGPATPLPDLASIHTPKDEEEYMRPPLTMAPELEVPVA 235 >gb|ABK95963.1| unknown [Populus trichocarpa] Length = 232 Score = 420 bits (1080), Expect = e-115 Identities = 214/233 (91%), Positives = 221/233 (94%) Frame = -3 Query: 960 MTTQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 781 M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60 Query: 780 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 601 EKGRRIRELTSVVQKRFKFPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY Sbjct: 61 EKGRRIRELTSVVQKRFKFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120 Query: 600 GVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQG 421 GVLRF+MESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV EYIDSAVRHVLLRQG Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQG 180 Query: 420 VLGIKVKIMLDWDPKGKQGPMTPLPDLVTIHMPKDEEYVRPALMAPEIDVAAA 262 VLGIKVKIMLDWDPKGK GPMTPLPDLVTIH PK+EEYV P +M I++ A Sbjct: 181 VLGIKVKIMLDWDPKGKVGPMTPLPDLVTIHPPKEEEYV-PPVMTTNIEIPVA 232