BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000200
         (1179 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arab...   187   3e-45
ref|NP_192643.2| RNA recognition motif-containing protein [Arabi...   186   1e-44
dbj|BAD43393.1| putative protein [Arabidopsis thaliana]               185   2e-44
ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   182   2e-43
ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   182   2e-43

>ref|XP_002872360.1| hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp.
            lyrata] gi|297318197|gb|EFH48619.1| hypothetical protein
            ARALYDRAFT_489706 [Arabidopsis lyrata subsp. lyrata]
          Length = 300

 Score =  187 bits (476), Expect = 3e-45
 Identities = 100/231 (43%), Positives = 150/231 (64%), Gaps = 8/231 (3%)
 Frame = -1

Query: 1077 STTEHTLVESPTT-----VSEQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNVTNVELSMY 913
            +TT+  ++ES ++     V E+  KTRLIAQN+PW ST EDI++LF+K+GNV ++E+SM+
Sbjct: 67   TTTQDPVLESSSSSATEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGNVIDIEMSMH 126

Query: 912  NKDRNRGLAFITMGSXXXXXXXXXXLGTCEIDGRSVSVAYAKVRKTK---PRVITESTPK 742
             K+RNRGL FI M S          L +C+ +GR + V YAK +K K   PR      P 
Sbjct: 127  KKERNRGLVFIEMASPDEAATALKSLESCDYEGRRLKVDYAKTKKKKTYAPREKPSPVPT 186

Query: 741  YDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEKAEEA 562
            ++LFVANL+++ ++K L EFF     +VVS EV +Q  P R+ +GYGFVSF++ ++AE A
Sbjct: 187  FNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFQENP-RRSSGYGFVSFKTKKQAEAA 245

Query: 561  IRDFQGNELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSDNTE 409
            + +FQG + MG+P+RLA S + +K Q+K+G+   E+  E +  E  +   E
Sbjct: 246  LIEFQGKDFMGRPIRLAKSKQFVKLQAKEGLQPPEEEEEPSPSEAMTQEVE 296


>ref|NP_192643.2| RNA recognition motif-containing protein [Arabidopsis thaliana]
            gi|38603886|gb|AAR24688.1| At4g09040 [Arabidopsis
            thaliana] gi|51968384|dbj|BAD42884.1| putative protein
            [Arabidopsis thaliana] gi|51969486|dbj|BAD43435.1|
            putative protein [Arabidopsis thaliana]
            gi|51969588|dbj|BAD43486.1| putative protein [Arabidopsis
            thaliana] gi|51970774|dbj|BAD44079.1| putative protein
            [Arabidopsis thaliana] gi|62319325|dbj|BAD94588.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332657315|gb|AEE82715.1| RNA recognition
            motif-containing protein [Arabidopsis thaliana]
          Length = 304

 Score =  186 bits (472), Expect = 1e-44
 Identities = 101/243 (41%), Positives = 151/243 (62%), Gaps = 10/243 (4%)
 Frame = -1

Query: 1107 KTNLLVFQTPSTTEHTLVES-------PTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQK 949
            K+  L     +TT+  ++ES       P  V E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57   KSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 948  HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIDGRSVSVAYAKVRKTK- 772
            +G+V ++E+SM+ K+RNRGL FI M S          L +CE +GR + V YAK +K K 
Sbjct: 117  YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 771  --PRVITESTPKYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 598
              PR      P ++LFVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177  YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 597  VSFRSMEKAEEAIRDFQGNELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSD 418
            VSF++ ++AE A+ +FQG + +G+P+RLA S + +K Q+K+G+   E+ AE    +  + 
Sbjct: 236  VSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETM 295

Query: 417  NTE 409
              E
Sbjct: 296  TQE 298


>dbj|BAD43393.1| putative protein [Arabidopsis thaliana]
          Length = 304

 Score =  185 bits (470), Expect = 2e-44
 Identities = 101/243 (41%), Positives = 150/243 (61%), Gaps = 9/243 (3%)
 Frame = -1

Query: 1110 RKTNLLVFQTPSTTEHTLVES------PTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQK 949
            +  NL  + + +T E  L  S      P  V E+  KTRLIAQN+PW ST EDI++LF+K
Sbjct: 57   KSRNLTSYFSTTTQEPVLDSSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEK 116

Query: 948  HGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIDGRSVSVAYAKVRKTK- 772
            +G+V ++E+SM+ K+RNRGL FI M S          L +CE +GR + V YAK +K K 
Sbjct: 117  YGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176

Query: 771  --PRVITESTPKYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGF 598
              PR      P ++LFVANL+++ ++K L EFF     +VVS EV +   P R+ +GYGF
Sbjct: 177  YAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENP-RRSSGYGF 235

Query: 597  VSFRSMEKAEEAIRDFQGNELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSEERRSD 418
            VSF++ ++AE A+ +FQG + +G+P+RLA S + +K Q+K+G+   E+ AE    +  + 
Sbjct: 236  VSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEPSQSETM 295

Query: 417  NTE 409
              E
Sbjct: 296  TQE 298


>ref|XP_004136268.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus] gi|449497014|ref|XP_004160289.1| PREDICTED: 31
            kDa ribonucleoprotein, chloroplastic-like [Cucumis
            sativus]
          Length = 300

 Score =  182 bits (461), Expect = 2e-43
 Identities = 101/233 (43%), Positives = 151/233 (64%), Gaps = 11/233 (4%)
 Frame = -1

Query: 1110 RKTNLLVFQTPSTTEHTLVESPTTVSEQEPKTRLIAQNIPWNSTAEDIKNLFQKHGNVTN 931
            ++T+  VFQ  ST++   V SP+  +E+  +TRL+AQN+PW+ST EDI++LF+K+G V +
Sbjct: 69   KRTSTFVFQFASTSQDEAVSSPSD-TEEFSQTRLLAQNVPWDSTPEDIRSLFEKYGTVLD 127

Query: 930  VELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIDGRSVSVAYAKVRKTKPRVITES 751
            VELSMYNK RNRGLAF+TMGS          L + E +GR++ + YAK++K KP    + 
Sbjct: 128  VELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLNYAKLKKEKPSPPVKP 187

Query: 750  TP-KYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKPTGYGFVSFRSMEK 574
             P  ++LFVANL +  ++KDL EFF   + +VVSA++ +   P R+ +GYGFV+F++ + 
Sbjct: 188  KPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENP-RRSSGYGFVAFKTKKD 246

Query: 573  AEEAIRDFQGNELMGKPVRLAFSNRILK----------GQSKDGISLGEKSAE 445
            AE AI +FQG   MG+ +R+A S + +K            S DG+ L   +AE
Sbjct: 247  AEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTDGVELANAAAE 299


>ref|XP_002285735.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
            gi|302142004|emb|CBI19207.3| unnamed protein product
            [Vitis vinifera]
          Length = 294

 Score =  182 bits (461), Expect = 2e-43
 Identities = 105/250 (42%), Positives = 150/250 (60%), Gaps = 12/250 (4%)
 Frame = -1

Query: 1116 TKRKTNLLVFQTPSTTEHTLVESPTTV----------SEQEPKTRLIAQNIPWNSTAEDI 967
            T R+ NL      + T+     SP+T            E+  +TRLIAQNIPW  TA+DI
Sbjct: 46   TTRRINLFHVSASAQTQSPPPASPSTAVTVDTPQNDEEEEFSRTRLIAQNIPWTCTAQDI 105

Query: 966  KNLFQKHGNVTNVELSMYNKDRNRGLAFITMGSXXXXXXXXXXLGTCEIDGRSVSVAYAK 787
            ++LF+K+G V +VELSM+NK RNRGLAFI+MGS          L + E++GR++ V YA 
Sbjct: 106  RSLFEKYGTVLDVELSMHNKTRNRGLAFISMGSPEEALAALSNLESYELEGRAIKVNYAN 165

Query: 786  VRKTKPRVITESTP--KYDLFVANLSWKVKSKDLIEFFKPMNSDVVSAEVTYQMTPTRKP 613
             +K KP    +  P   Y+LF+ANL ++ ++KDL EFF   N +VVSAEV +   P R+ 
Sbjct: 166  PQKKKPSSPIQHKPVTPYNLFIANLPYQARAKDLREFFSSGNCNVVSAEVIFHENP-RRS 224

Query: 612  TGYGFVSFRSMEKAEEAIRDFQGNELMGKPVRLAFSNRILKGQSKDGISLGEKSAESNSE 433
            +GYGFVSF S E+A+ A+  FQG   MG+P+R+A S R +K ++K      + +   NS 
Sbjct: 225  SGYGFVSFGSKEEADTALSSFQGQMFMGRPLRVARSRRFVKRENKMSDQTEDVANPLNSN 284

Query: 432  ERRSDNTEEI 403
              +S   ++I
Sbjct: 285  SEQSGEGDDI 294