BLASTX nr result
ID: Coptis24_contig00000170
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000170 (835 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana... 150 3e-34 ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus... 149 8e-34 ref|NP_001241947.1| uncharacterized protein LOC100786192 [Glycin... 148 1e-33 ref|NP_001237852.1| uncharacterized protein LOC100499656 [Glycin... 147 2e-33 ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arab... 147 4e-33 >ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana] gi|75308015|sp|Q9ASV6.1|RR20_ARATH RecName: Full=30S ribosomal protein S20, chloroplastic; Flags: Precursor gi|188036221|pdb|3BBN|T Chain T, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome. gi|13605653|gb|AAK32820.1|AF361807_1 AT3g15190/F4B12_10 [Arabidopsis thaliana] gi|13899121|gb|AAK48982.1|AF370555_1 Unknown protein [Arabidopsis thaliana] gi|15777889|gb|AAL05905.1| AT3g15190/F4B12_10 [Arabidopsis thaliana] gi|18377542|gb|AAL66937.1| unknown protein [Arabidopsis thaliana] gi|21592469|gb|AAM64420.1| 30S ribosomal protein S20 [Arabidopsis thaliana] gi|332642109|gb|AEE75630.1| 30S ribosomal protein S20 [Arabidopsis thaliana] Length = 202 Score = 150 bits (379), Expect = 3e-34 Identities = 88/191 (46%), Positives = 110/191 (57%), Gaps = 5/191 (2%) Frame = -3 Query: 776 IHCVSSCFSLQKKFPT-----INCTTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNG 612 + C+SSC +L+ +F I+C++ S S G Sbjct: 5 VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTG 64 Query: 611 GLWMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEAL 432 LW+ A TKK DS R+YNKSKKSE +TRMKKVLEAL Sbjct: 65 NLWVQKPMRQLIVCEAA--APTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEAL 122 Query: 431 DVLQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHH 252 + L+KKTDAQ+ E++++EKLI EAYSAIDKAVK ALH+NTGA RKSRLARRKK VEIHH Sbjct: 123 EGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182 Query: 251 GWYTPASSLSA 219 GWY P ++ +A Sbjct: 183 GWYVPDAAAAA 193 >ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus communis] gi|223528058|gb|EEF30134.1| 30S ribosomal protein S20, putative [Ricinus communis] Length = 185 Score = 149 bits (376), Expect = 8e-34 Identities = 91/184 (49%), Positives = 105/184 (57%) Frame = -3 Query: 785 MAAIHCVSSCFSLQKKFPTINCTTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGGL 606 MAA +SSCFS+ K +++ TT+S G L Sbjct: 1 MAAAAVLSSCFSVPTKLKSLSLTTTSSSTITYPALRSLSFSSAISHDVFN------KGCL 54 Query: 605 WMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDV 426 M A K+ DS RIY+K+ KSE++TRMKKVLEALD Sbjct: 55 SMSIVKRPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDD 114 Query: 425 LQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 246 L+KK+DAQ+ EVL IEKLIAEAYS IDKAVK G LHRNTGA RKSRLARRKK VEIHHGW Sbjct: 115 LRKKSDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGW 174 Query: 245 YTPA 234 YTPA Sbjct: 175 YTPA 178 >ref|NP_001241947.1| uncharacterized protein LOC100786192 [Glycine max] gi|255640470|gb|ACU20521.1| unknown [Glycine max] Length = 164 Score = 148 bits (374), Expect = 1e-33 Identities = 76/111 (68%), Positives = 85/111 (76%) Frame = -3 Query: 554 ATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDVLQKKTDAQSVEVLSIEK 375 A KK DS R+YNK++KSE+KTR KKVLEAL+VL+KK DAQ+ E+LSIEK Sbjct: 53 AAPKKVDSAVKRARQAEKRRVYNKARKSEIKTRTKKVLEALEVLKKKQDAQAEEILSIEK 112 Query: 374 LIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPASSLS 222 LI EAYS IDKAV+ G LHRNTGANRKSRLARRKK VEIHHGWYTP S Sbjct: 113 LIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPTPEAS 163 >ref|NP_001237852.1| uncharacterized protein LOC100499656 [Glycine max] gi|255625577|gb|ACU13133.1| unknown [Glycine max] Length = 180 Score = 147 bits (372), Expect = 2e-33 Identities = 75/107 (70%), Positives = 85/107 (79%) Frame = -3 Query: 554 ATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDVLQKKTDAQSVEVLSIEK 375 A KK DS R+YNK++KSE+KTR KKVLEAL+VL+KK+DAQ+ E+L IEK Sbjct: 69 APKKKVDSAVKRARQAEKHRVYNKARKSEIKTRTKKVLEALEVLKKKSDAQAEEILPIEK 128 Query: 374 LIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPA 234 LI EAYS IDKAV+ G LHRNTGANRKSRLARRKK VEIHHGWYTPA Sbjct: 129 LIGEAYSIIDKAVRVGTLHRNTGANRKSRLARRKKAVEIHHGWYTPA 175 >ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arabidopsis lyrata subsp. lyrata] gi|297328759|gb|EFH59178.1| hypothetical protein ARALYDRAFT_897793 [Arabidopsis lyrata subsp. lyrata] Length = 197 Score = 147 bits (370), Expect = 4e-33 Identities = 87/183 (47%), Positives = 106/183 (57%), Gaps = 3/183 (1%) Frame = -3 Query: 776 IHCVSSCFSLQKKFPTINC---TTSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNGGL 606 + C+SSC +L+ +F ++ ++SS S+G L Sbjct: 5 VQCLSSCATLESQFKVLSLKGISSSSSFSNRRGGASATLSSSLSFSQSVSQCVAFSSGNL 64 Query: 605 WMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDV 426 W+ A TKK DS RIYNKSKKSE +TRMKKVLEAL+ Sbjct: 65 WVQKPTRQLIVCEAA--APTKKADSAAKRARQAEKRRIYNKSKKSEARTRMKKVLEALEG 122 Query: 425 LQKKTDAQSVEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 246 L+KKTDAQ E++++EKLI EAYSAIDKAVK ALH+NTGA RKSRLARRKK VEIHHGW Sbjct: 123 LKKKTDAQPDEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGW 182 Query: 245 YTP 237 Y P Sbjct: 183 YVP 185