BLASTX nr result
ID: Coptis24_contig00000149
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000149 (946 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAN63891.1| hypothetical protein VITISV_012657 [Vitis vinifera] 216 8e-54 ref|XP_002270942.2| PREDICTED: uncharacterized protein LOC100245... 212 1e-52 gb|ABB17000.1| ribosomal protein L23 family protein [Solanum tub... 205 1e-50 ref|XP_004137193.1| PREDICTED: 50S ribosomal protein L23-like [C... 196 5e-48 ref|XP_002531259.1| RNA binding protein, putative [Ricinus commu... 192 1e-46 >emb|CAN63891.1| hypothetical protein VITISV_012657 [Vitis vinifera] Length = 480 Score = 216 bits (549), Expect = 8e-54 Identities = 117/181 (64%), Positives = 130/181 (71%) Frame = +1 Query: 187 KMGSRLGRRVINFANLPIKLLMPTSFDYIKEIALKTIPSASKIEIKRVLESLYGFEVEEV 366 KMGSRLGRRVINF NLPIKLLMP+SF IKEIALKT+PSASKIEIKRVLESLYGFEVE+V Sbjct: 309 KMGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKV 368 Query: 367 RTLNMDXXXXXXXXXXXXXPDYKKAYVTLKYPLSINPDLYPIRVIEEERKNMNKQSKSSV 546 RTLNM+ PDYKKAY+TLK PLSI+PDLYPIR+IEEE+KN NKQSKSS+ Sbjct: 369 RTLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSI 428 Query: 547 VGDEQEVKSHWLDGSGNKTIKPGKQGNMRYTRDDRKPRGSSRGDRDTGTAKFPWTSMRTP 726 V +E E KSHWLDG +P K R RG RG AKFPW+ MR Sbjct: 429 V-EEGEAKSHWLDGKDGDRFRPEKSSAER-------GRG-GRGGAAAAAAKFPWSGMRAS 479 Query: 727 K 729 + Sbjct: 480 R 480 >ref|XP_002270942.2| PREDICTED: uncharacterized protein LOC100245960 [Vitis vinifera] gi|296084744|emb|CBI25888.3| unnamed protein product [Vitis vinifera] Length = 170 Score = 212 bits (539), Expect = 1e-52 Identities = 115/180 (63%), Positives = 129/180 (71%) Frame = +1 Query: 190 MGSRLGRRVINFANLPIKLLMPTSFDYIKEIALKTIPSASKIEIKRVLESLYGFEVEEVR 369 MGSRLGRRVINF NLPIKLLMP+SF IKEIALKT+PSASKIEIKRVLESLYGFEVE+VR Sbjct: 1 MGSRLGRRVINFTNLPIKLLMPSSFTNIKEIALKTVPSASKIEIKRVLESLYGFEVEKVR 60 Query: 370 TLNMDXXXXXXXXXXXXXPDYKKAYVTLKYPLSINPDLYPIRVIEEERKNMNKQSKSSVV 549 TLNM+ PDYKKAY+TLK PLSI+PDLYPIR+IEEE+KN NKQSKSS+V Sbjct: 61 TLNMEGKKKKRGGLLIAKPDYKKAYITLKNPLSISPDLYPIRLIEEEKKNTNKQSKSSIV 120 Query: 550 GDEQEVKSHWLDGSGNKTIKPGKQGNMRYTRDDRKPRGSSRGDRDTGTAKFPWTSMRTPK 729 +E E KSHWLDG +P K R R RG + AKFPW+ MR + Sbjct: 121 -EEGEAKSHWLDGKDGDRFRPEKSSAER----GRGGRGGA-----AAAAKFPWSGMRASR 170 >gb|ABB17000.1| ribosomal protein L23 family protein [Solanum tuberosum] Length = 188 Score = 205 bits (521), Expect = 1e-50 Identities = 110/184 (59%), Positives = 132/184 (71%), Gaps = 6/184 (3%) Frame = +1 Query: 190 MGSRLGRRVINFANLPIKLLMPTSFDYIKEIALKTIPSASKIEIKRVLESLYGFEVEEVR 369 MGSRLGRRV+NFANLPIKLLMP+SF I EI+LKTIPSASKIEIKRVLESLYGFEVE+V+ Sbjct: 1 MGSRLGRRVVNFANLPIKLLMPSSFSNITEISLKTIPSASKIEIKRVLESLYGFEVEKVQ 60 Query: 370 TLNMDXXXXXXXXXXXXXPDYKKAYVTLKYPLSINPDLYPIRVIEEERKNMNKQSKSSVV 549 TLNMD PDYKKAYVTL+ PLSI+PDL+PI VI+EE+KNM+K+SKSS+V Sbjct: 61 TLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDLFPIGVIQEEKKNMSKKSKSSIV 120 Query: 550 GDEQEVKSHWL----DGSGNKTIKPGKQGNMR--YTRDDRKPRGSSRGDRDTGTAKFPWT 711 D++ K HWL DG ++ G+ + R D + RG D AKFPW+ Sbjct: 121 EDDEPKKMHWLDEKKDGRNRSEMRFGRGRDHRSGQRSDVGRDRGGEHRDVGAAAAKFPWS 180 Query: 712 SMRT 723 SMR+ Sbjct: 181 SMRS 184 >ref|XP_004137193.1| PREDICTED: 50S ribosomal protein L23-like [Cucumis sativus] gi|449483270|ref|XP_004156540.1| PREDICTED: 50S ribosomal protein L23-like isoform 1 [Cucumis sativus] gi|449483272|ref|XP_004156541.1| PREDICTED: 50S ribosomal protein L23-like isoform 2 [Cucumis sativus] Length = 174 Score = 196 bits (499), Expect = 5e-48 Identities = 107/178 (60%), Positives = 127/178 (71%) Frame = +1 Query: 190 MGSRLGRRVINFANLPIKLLMPTSFDYIKEIALKTIPSASKIEIKRVLESLYGFEVEEVR 369 MGSRLGRRV++FANLPIKLLMPTSF I EIALKTIPSASKIEIKRVLESLYGFEV++V+ Sbjct: 1 MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVQ 60 Query: 370 TLNMDXXXXXXXXXXXXXPDYKKAYVTLKYPLSINPDLYPIRVIEEERKNMNKQSKSSVV 549 TLNM+ PDYKKAYVTL+ PLSI+PD+YPIR+IEE+++NMNKQSKSS+V Sbjct: 61 TLNMEGKKKKRGGILIAKPDYKKAYVTLRNPLSISPDMYPIRIIEEDKRNMNKQSKSSIV 120 Query: 550 GDEQEVKSHWLDGSGNKTIKPGKQGNMRYTRDDRKPRGSSRGDRDTGTAKFPWTSMRT 723 +E E K HWL IK K D + R + + KFPW+SMR+ Sbjct: 121 -EEGEAKKHWLHEKEPVGIKTYKG-----FADRGRRRSGGGAETVEPSTKFPWSSMRS 172 >ref|XP_002531259.1| RNA binding protein, putative [Ricinus communis] gi|223529144|gb|EEF31123.1| RNA binding protein, putative [Ricinus communis] Length = 174 Score = 192 bits (487), Expect = 1e-46 Identities = 105/186 (56%), Positives = 129/186 (69%), Gaps = 6/186 (3%) Frame = +1 Query: 190 MGSRLGRRVINFANLPIKLLMPTSFDYIKEIALKTIPSASKIEIKRVLESLYGFEVEEVR 369 M SR+G RV++FANLPIKLLMP +F+ I+E ALKTIPSASKIEIKRVLESLYGFEV++VR Sbjct: 1 MASRVGGRVVHFANLPIKLLMPKTFNNIEEFALKTIPSASKIEIKRVLESLYGFEVDKVR 60 Query: 370 TLNMDXXXXXXXXXXXXXPDYKKAYVTLKYPLSINPDLYPIRVIEEERKNMNKQSKSSVV 549 TLNM+ PDYKKAY+TLK PLSI+PDLYP+R+I E+++ MNK+ KSS+V Sbjct: 61 TLNMEGKKKKRGGFLAAKPDYKKAYITLKNPLSISPDLYPVRIIAEDKERMNKERKSSIV 120 Query: 550 GDEQEVKSHWLDGSGNKTIKPGKQGNMRYTRDDRKPRGSSRGDRD------TGTAKFPWT 711 D+ E K HWLD K N R+ + R +SRG RD +KFPWT Sbjct: 121 -DDGEGKKHWLDDK-------KKMKNERFGNEKR----NSRGGRDFHVENANANSKFPWT 168 Query: 712 SMRTPK 729 SMRT + Sbjct: 169 SMRTSR 174