BLASTX nr result

ID: Coptis24_contig00000148 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000148
         (1896 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326533.1| predicted protein [Populus trichocarpa] gi|2...   341   3e-91
ref|XP_002277589.1| PREDICTED: uncharacterized protein LOC100266...   337   7e-90
ref|XP_002303427.1| predicted protein [Populus trichocarpa] gi|2...   329   1e-87
ref|XP_003533438.1| PREDICTED: nucleolar protein 12-like [Glycin...   321   4e-85
ref|XP_003517031.1| PREDICTED: nucleolar protein 12-like [Glycin...   321   4e-85

>ref|XP_002326533.1| predicted protein [Populus trichocarpa] gi|222833855|gb|EEE72332.1|
            predicted protein [Populus trichocarpa]
          Length = 487

 Score =  341 bits (875), Expect = 3e-91
 Identities = 197/376 (52%), Positives = 237/376 (63%), Gaps = 14/376 (3%)
 Frame = -1

Query: 1344 IEEVYEAKAY-----NADVEIIISXXXXXXXXXXKDDVISKEEQGYDDEDKLLRTVFVGN 1180
            +E  YEAK Y     N +   ++            D ++SKE +G+DDE KLLRTVFVGN
Sbjct: 111  LEREYEAKKYGPVVDNEENASVVVGAKRKNTDDAADVLVSKESEGFDDESKLLRTVFVGN 170

Query: 1179 LPXXXXXXXXXKEFSKFGDVESVRIRSVPIVDSKTPRKGAIMKGKINESVDSVHAYIVFK 1000
            LP         KEFSKFGDVESVRIRSVPI +SK PRKGAI+  K N++VDSVHAY+VFK
Sbjct: 171  LPLKVKKKTLIKEFSKFGDVESVRIRSVPIAESKIPRKGAILLKKFNDNVDSVHAYVVFK 230

Query: 999  DEKSAQASLSHNMAMLGGNHIRVDNACPPRKKLKADSAPVYDNKRTVFVGNLPFDVKDEE 820
            +E+SA+ASLSHNMA++GGNHIRVD ACPPRKKLK   AP+YDNKRTVFVGNLPFDVKDEE
Sbjct: 231  NEQSAEASLSHNMAVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEE 290

Query: 819  IYQLLCGIKQIESDIEGVRVIRDPNSSVGKGIAYVLFKTMEAANFIIXXXXXXXXXXXXX 640
            +YQL  GIK + S IE VRVIRDP+  +GKGIAYVLFKT EAAN +I             
Sbjct: 291  LYQLFTGIKDLASSIEAVRVIRDPHVGLGKGIAYVLFKTREAANLVIKKRNLKLRDRELR 350

Query: 639  LYHAKADSTPSKKRNLPMPSADNSNGKRLAVAPRENHSDKNKTKNKPVLSYQGLKASKSI 460
            L HA+ DSTPSK++N       NS  KRLA   R  + + N+   K   SYQGL+ASKS 
Sbjct: 351  LSHARQDSTPSKRKNSFAEETANSPNKRLAPDSRAPYHN-NRPDRKAAKSYQGLRASKSG 409

Query: 459  QKKETR-----KKEFSPANEA----EVKQHXXXXXXXXXXXXXXXXXXXASRPTGLKRKP 307
             +K+       K++ +P  ++    E  Q                    A  P   KRK 
Sbjct: 410  VEKKVHAPAHSKRDVAPKMKSKPREEKHQGKRPAVAKRKAKATALKDGGALEPARQKRKL 469

Query: 306  EGRTPDSFHRNKKARK 259
            + RTPDS +R KKARK
Sbjct: 470  DSRTPDSSNRKKKARK 485


>ref|XP_002277589.1| PREDICTED: uncharacterized protein LOC100266124 [Vitis vinifera]
          Length = 541

 Score =  337 bits (864), Expect = 7e-90
 Identities = 195/376 (51%), Positives = 242/376 (64%), Gaps = 14/376 (3%)
 Frame = -1

Query: 1344 IEEVYEAKAYNADVEIIISXXXXXXXXXXKDDVISKEEQGYDDEDKLLRTVFVGNLPXXX 1165
            IEE YEA+ Y    ++              + ++SKE  G+DDE KLLRTVFVGNLP   
Sbjct: 166  IEEEYEAQHYGTVAKVEGVGEKRKSVVNPAEMLVSKE--GFDDESKLLRTVFVGNLPLKI 223

Query: 1164 XXXXXXKEFSKFGDVESVRIRSVPIVDSKTPRKGAIMKGKINESVDSVHAYIVFKDEKSA 985
                  KEFS FG+V+SVRIRSVPI+DSK PRKGAI+  KIN+SVDSVHAYIVFK E+SA
Sbjct: 224  KKKALLKEFSVFGEVQSVRIRSVPILDSKKPRKGAIISKKINDSVDSVHAYIVFKTEESA 283

Query: 984  QASLSHNMAMLGGNHIRVDNACPPRKKLKADS-APVYDNKRTVFVGNLPFDVKDEEIYQL 808
            Q SLSHNM+++GGNHIRVD ACPPRKKLK ++ A +YDNKRTVFVGNLPFDVK EEIYQL
Sbjct: 284  QTSLSHNMSVIGGNHIRVDRACPPRKKLKGENDASLYDNKRTVFVGNLPFDVKAEEIYQL 343

Query: 807  LCGIKQIESDIEGVRVIRDPNSSVGKGIAYVLFKTMEAANFIIXXXXXXXXXXXXXLYHA 628
             CGI  +ES IE VRV+R+P++SVGKGIAY+LFKT +AAN ++             LYHA
Sbjct: 344  FCGIDSLESSIEAVRVVRNPHTSVGKGIAYILFKTKDAANLVVKKRNLKLRDRDLRLYHA 403

Query: 627  KADS-TPSKKRNLPMPSADNSNGKRLAVAPRENHSDKNKTKNKPVLSYQGLKASKS---- 463
            K  S TPSK+RN     AD S  K+LA   R +    N+ K K V+SYQGL+ASKS    
Sbjct: 404  KPSSTTPSKRRNPTPAEADISPAKKLASGSRISLESSNRLKTKSVISYQGLQASKSGVPK 463

Query: 462  ---IQKKE-----TRKKEFSPANEAEVKQHXXXXXXXXXXXXXXXXXXXASRPTGLKRKP 307
               +Q KE     ++ ++ +   E + K+                     S+ TG KRK 
Sbjct: 464  KGRLQTKEAVKFKSKNQKENTLKEQQKKRPAVAARKAKINAVNAAGGGGGSKQTGKKRKL 523

Query: 306  EGRTPDSFHRNKKARK 259
            E +TP+   R+KKA+K
Sbjct: 524  ESQTPEGGRRSKKAKK 539


>ref|XP_002303427.1| predicted protein [Populus trichocarpa] gi|222840859|gb|EEE78406.1|
            predicted protein [Populus trichocarpa]
          Length = 491

 Score =  329 bits (844), Expect = 1e-87
 Identities = 193/380 (50%), Positives = 229/380 (60%), Gaps = 18/380 (4%)
 Frame = -1

Query: 1344 IEEVYEAKAY-----NADVEIIISXXXXXXXXXXKDDVISKEEQGYDDEDKLLRTVFVGN 1180
            +E  YEAK Y     N +   ++            D ++SKE +G+DDE KLLRTVFVGN
Sbjct: 115  LESEYEAKKYGPVVNNEENVRVVVGAKRKKADDAADVLVSKEGEGFDDERKLLRTVFVGN 174

Query: 1179 LPXXXXXXXXXKEFSKFGDVESVRIRSVPIVDSKTPRKGAIMKGKINESVDSVHAYIVFK 1000
            LP         KEFSKFG+VES+RIRS+PI +SK PRKGAI+  K N++ DSVHAYIVF 
Sbjct: 175  LPLKVKKKALIKEFSKFGEVESLRIRSMPITESKIPRKGAILLKKFNDNADSVHAYIVFN 234

Query: 999  DEKSAQASLSHNMAMLGGNHIRVDNACPPRKKLKADSAPVYDNKRTVFVGNLPFDVKDEE 820
             E+SA+ASL+HNMA++GGNHIRVD ACPPRKKLK   AP+YDNKRTVFVGNLPFDVKDEE
Sbjct: 235  TEQSAEASLTHNMAVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEE 294

Query: 819  IYQLLCGIKQIESDIEGVRVIRDPNSSVGKGIAYVLFKTMEAANFIIXXXXXXXXXXXXX 640
            IYQL  GIK + S IE VRVIR P+  +GKGIAYVLFKT EAAN +I             
Sbjct: 295  IYQLFTGIKDLASSIEAVRVIRHPHIGLGKGIAYVLFKTREAANLVIKKRNLKLRDRELR 354

Query: 639  LYHAKADSTPSKKRNLPMPSADNSNGKRLAVAPRENHSDKNKTKNKPVLSYQGLKASKSI 460
              HA+ DSTPSK+RN       N + K+LA   R      N+   K   SYQGL+ASKS 
Sbjct: 355  ASHARQDSTPSKRRNSFAGETANLSNKKLATDSR-TPDRNNRPDTKAAKSYQGLRASKS- 412

Query: 459  QKKETRKKEFSPAN-------------EAEVKQHXXXXXXXXXXXXXXXXXXXASRPTGL 319
                  KK  +PAN             + E +Q                    AS P   
Sbjct: 413  ---GIEKKVHAPANAKRNGTAKVKSKTQREKRQEKRPAVALRKAKATALKDGGASGPARQ 469

Query: 318  KRKPEGRTPDSFHRNKKARK 259
            KRK + RTPDS +R KKARK
Sbjct: 470  KRKLDSRTPDSSNRKKKARK 489


>ref|XP_003533438.1| PREDICTED: nucleolar protein 12-like [Glycine max]
          Length = 519

 Score =  321 bits (823), Expect = 4e-85
 Identities = 182/348 (52%), Positives = 222/348 (63%), Gaps = 16/348 (4%)
 Frame = -1

Query: 1254 DDVISKEEQGYDDEDKLLRTVFVGNLPXXXXXXXXXKEFSKFGDVESVRIRSVPIVDSKT 1075
            D ++SKE  G+DDEDKLLRTVFVGNLP         KEF KFG+VESVRIRSVPI D+K 
Sbjct: 177  DMMVSKE--GFDDEDKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKK 234

Query: 1074 PRKGAIMKGKINESVDSVHAYIVFKDEKSAQASLSHNMAMLGGNHIRVDNACPPRKKLKA 895
            PRKGAI+  KIN++ DSVHAYIVFK E+SAQASLSHNM+++ GNHIRVD ACPPRKK K 
Sbjct: 235  PRKGAILAKKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKG 294

Query: 894  DSAPVYDNKRTVFVGNLPFDVKDEEIYQLLCGIKQIESDIEGVRVIRDPNSSVGKGIAYV 715
            +S P+YD+KRTVFVGNLPFDVKDEE+YQL CGI  +ES IE VRV+RDP+ +VGKGIAYV
Sbjct: 295  ESTPLYDDKRTVFVGNLPFDVKDEELYQLFCGISNLESSIEAVRVVRDPHLNVGKGIAYV 354

Query: 714  LFKTMEAANFIIXXXXXXXXXXXXXLYHAKADSTPSK--------------KRNLPMPSA 577
            LFKT EAA F++             L HAK D+TPSK              KR  P+  A
Sbjct: 355  LFKTKEAAKFVVKKRNLKLRDRELRLSHAKVDATPSKRPNPSSAHAPSTPAKRPYPLAHA 414

Query: 576  DNSNGKRLAVAPRENHSDKN--KTKNKPVLSYQGLKASKSIQKKETRKKEFSPANEAEVK 403
             ++  K  +VA R   S  N  K+  K   SYQGL+A+KS   K+ +  E     + + +
Sbjct: 415  PSTPAKEFSVASRSPSSSNNMSKSNRKTNASYQGLRATKSDVHKKIQGGE-----KPKER 469

Query: 402  QHXXXXXXXXXXXXXXXXXXXASRPTGLKRKPEGRTPDSFHRNKKARK 259
                                   +  G+KRK + RTPDS  RN+K +K
Sbjct: 470  MTKRPSVAARKAKAKLGKESDLPKQAGMKRKLDSRTPDSTLRNRKVKK 517


>ref|XP_003517031.1| PREDICTED: nucleolar protein 12-like [Glycine max]
          Length = 515

 Score =  321 bits (823), Expect = 4e-85
 Identities = 189/382 (49%), Positives = 236/382 (61%), Gaps = 20/382 (5%)
 Frame = -1

Query: 1344 IEEVYEAKAYNADVEIIISXXXXXXXXXXKDD----VISKEEQGYDDEDKLLRTVFVGNL 1177
            +E+ +E K Y A VE  I            DD    ++SKE  G+D+EDKLLRTVFVGNL
Sbjct: 140  VEKEWEEKKYGA-VEEGIENKTVGIKRKTLDDPADMMVSKE--GFDNEDKLLRTVFVGNL 196

Query: 1176 PXXXXXXXXXKEFSKFGDVESVRIRSVPIVDSKTPRKGAIMKGKINESVDSVHAYIVFKD 997
            P         KEF KFG+VESVRIRSVPI D+K PRKGAI+  KIN++ DSVHAYIVFK 
Sbjct: 197  PLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKT 256

Query: 996  EKSAQASLSHNMAMLGGNHIRVDNACPPRKKLKADSAPVYDNKRTVFVGNLPFDVKDEEI 817
            E+SAQASL+HNM+++ GNHIRVD ACPPRKK K +S P+YDNKRTVFVGNLPFDVKDEE+
Sbjct: 257  EQSAQASLAHNMSLVEGNHIRVDRACPPRKKHKGESTPLYDNKRTVFVGNLPFDVKDEEL 316

Query: 816  YQLLCGIKQIESDIEGVRVIRDPNSSVGKGIAYVLFKTMEAANFIIXXXXXXXXXXXXXL 637
            Y+L CGI  +ES IE +RV+RDP+ +VGKGIAYVLFKT EAA F++             L
Sbjct: 317  YKLFCGISNLESSIEAIRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRNLKLRDRELRL 376

Query: 636  YHAKADSTPSK--------------KRNLPMPSADNSNGKRLAVAPRENHSDKN--KTKN 505
             HAKAD+TPSK              KR  P   A ++  K+ +VA R   S  N  K+  
Sbjct: 377  CHAKADATPSKRPNPSSAHAPSTPAKRPNPSAHAPSTPAKKFSVASRSPSSSNNMSKSNR 436

Query: 504  KPVLSYQGLKASKSIQKKETRKKEFSPANEAEVKQHXXXXXXXXXXXXXXXXXXXASRPT 325
            K   SYQGL+A+KS   K+ +  E     + + ++                      +  
Sbjct: 437  KTNTSYQGLRATKSDVHKKIQGGE-----KPKERKTKRPSVAARKAKANLVKQSDLPKQA 491

Query: 324  GLKRKPEGRTPDSFHRNKKARK 259
            G+KRK + RTPDS  RN+K +K
Sbjct: 492  GMKRKVDSRTPDSTLRNRKVKK 513


Top