BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000132
         (236 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode...   130   1e-28
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              124   1e-26
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   124   1e-26
gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh...   123   2e-26
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   121   5e-26

>gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron
           macrophyllum]
          Length = 1019

 Score =  130 bits (326), Expect = 1e-28
 Identities = 62/78 (79%), Positives = 70/78 (89%)
 Frame = -3

Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55
           KHAERRMVKAMQRDLYGER +  IEHYLDAS+ITNGL++AFSTGAWSH +K  E+I+GVV
Sbjct: 255 KHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISGVV 314

Query: 54  ANLRRTNPLQTMCDMRKT 1
           A LRRTNPLQT+ DMRKT
Sbjct: 315 ATLRRTNPLQTIADMRKT 332


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  124 bits (310), Expect = 1e-26
 Identities = 59/78 (75%), Positives = 69/78 (88%)
 Frame = -3

Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55
           +HAERRMVKAMQR+LYG+R+LR IE+YLDAS+ITNGL++AFSTG WSH FK  E+I+GVV
Sbjct: 471 RHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVV 530

Query: 54  ANLRRTNPLQTMCDMRKT 1
           A LRRTNPLQ   DMRKT
Sbjct: 531 ATLRRTNPLQMTADMRKT 548


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  124 bits (310), Expect = 1e-26
 Identities = 59/78 (75%), Positives = 69/78 (88%)
 Frame = -3

Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55
           +HAERRMVKAMQR+LYG+R+LR IE+YLDAS+ITNGL++AFSTG WSH FK  E+I+GVV
Sbjct: 435 RHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVV 494

Query: 54  ANLRRTNPLQTMCDMRKT 1
           A LRRTNPLQ   DMRKT
Sbjct: 495 ATLRRTNPLQMTADMRKT 512


>gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score =  123 bits (308), Expect = 2e-26
 Identities = 58/78 (74%), Positives = 68/78 (87%)
 Frame = -3

Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55
           KHAERRM KAMQRDLY +R ++ I+ YLDAS+ITNGL++AFSTGAWSH +K  E+I+GVV
Sbjct: 56  KHAERRMTKAMQRDLYRDREIQSIDSYLDASIITNGLSRAFSTGAWSHPYKRMERISGVV 115

Query: 54  ANLRRTNPLQTMCDMRKT 1
           A LRRTNPLQTM DMRKT
Sbjct: 116 ATLRRTNPLQTMADMRKT 133


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  121 bits (304), Expect = 5e-26
 Identities = 55/77 (71%), Positives = 68/77 (88%)
 Frame = -3

Query: 231 HAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVVA 52
           HA RRM KA+Q+DLYG+R++R IEHYLDAS++TNGL++AFSTGAWSH +K  E+I+GVVA
Sbjct: 440 HARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVA 499

Query: 51  NLRRTNPLQTMCDMRKT 1
           NL R NPLQTM D+RKT
Sbjct: 500 NLGRANPLQTMVDLRKT 516