BLASTX nr result
ID: Coptis24_contig00000132
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000132 (236 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhodode... 130 1e-28 emb|CBI21137.3| unnamed protein product [Vitis vinifera] 124 1e-26 ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub... 124 1e-26 gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrh... 123 2e-26 ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ... 121 5e-26 >gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] Length = 1019 Score = 130 bits (326), Expect = 1e-28 Identities = 62/78 (79%), Positives = 70/78 (89%) Frame = -3 Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55 KHAERRMVKAMQRDLYGER + IEHYLDAS+ITNGL++AFSTGAWSH +K E+I+GVV Sbjct: 255 KHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGAWSHPYKKMERISGVV 314 Query: 54 ANLRRTNPLQTMCDMRKT 1 A LRRTNPLQT+ DMRKT Sbjct: 315 ATLRRTNPLQTIADMRKT 332 >emb|CBI21137.3| unnamed protein product [Vitis vinifera] Length = 1220 Score = 124 bits (310), Expect = 1e-26 Identities = 59/78 (75%), Positives = 69/78 (88%) Frame = -3 Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55 +HAERRMVKAMQR+LYG+R+LR IE+YLDAS+ITNGL++AFSTG WSH FK E+I+GVV Sbjct: 471 RHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVV 530 Query: 54 ANLRRTNPLQTMCDMRKT 1 A LRRTNPLQ DMRKT Sbjct: 531 ATLRRTNPLQMTADMRKT 548 >ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis vinifera] Length = 1198 Score = 124 bits (310), Expect = 1e-26 Identities = 59/78 (75%), Positives = 69/78 (88%) Frame = -3 Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55 +HAERRMVKAMQR+LYG+R+LR IE+YLDAS+ITNGL++AFSTG WSH FK E+I+GVV Sbjct: 435 RHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVV 494 Query: 54 ANLRRTNPLQTMCDMRKT 1 A LRRTNPLQ DMRKT Sbjct: 495 ATLRRTNPLQMTADMRKT 512 >gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus] Length = 821 Score = 123 bits (308), Expect = 2e-26 Identities = 58/78 (74%), Positives = 68/78 (87%) Frame = -3 Query: 234 KHAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVV 55 KHAERRM KAMQRDLY +R ++ I+ YLDAS+ITNGL++AFSTGAWSH +K E+I+GVV Sbjct: 56 KHAERRMTKAMQRDLYRDREIQSIDSYLDASIITNGLSRAFSTGAWSHPYKRMERISGVV 115 Query: 54 ANLRRTNPLQTMCDMRKT 1 A LRRTNPLQTM DMRKT Sbjct: 116 ATLRRTNPLQTMADMRKT 133 >ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis] gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis] Length = 1203 Score = 121 bits (304), Expect = 5e-26 Identities = 55/77 (71%), Positives = 68/77 (88%) Frame = -3 Query: 231 HAERRMVKAMQRDLYGERNLRQIEHYLDASLITNGLTKAFSTGAWSHHFKYSEKINGVVA 52 HA RRM KA+Q+DLYG+R++R IEHYLDAS++TNGL++AFSTGAWSH +K E+I+GVVA Sbjct: 440 HARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVA 499 Query: 51 NLRRTNPLQTMCDMRKT 1 NL R NPLQTM D+RKT Sbjct: 500 NLGRANPLQTMVDLRKT 516