BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000116
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza ...    57   2e-06
gb|EEC73664.1| hypothetical protein OsI_08202 [Oryza sativa Indi...    56   3e-06
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa Japonica Group] gi...    55   6e-06
gb|EEC77095.1| hypothetical protein OsI_15508 [Oryza sativa Indi...    55   6e-06
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    55   8e-06

>gb|AAK39575.1|AC025296_10 putative reverse transcriptase [Oryza sativa Japonica Group]
           gi|31433076|gb|AAP54636.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 791

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 3/145 (2%)
 Frame = +3

Query: 3   RIGQGTTTSILKDPWLKCLDKPVTLEELGVMGDSLSNLH-VSDLFLADNSGWDSAKLSQH 179
           R+G G +  I +DPWL     P       + G +   L  VSDL   D S WD  K+ Q+
Sbjct: 335 RVGNGNSIRIWRDPWL-----PRDHSRRPITGKANCRLKWVSDLITEDGS-WDVPKIHQY 388

Query: 180 FHPFICQLIHEVVVRPEGATADKMIWAMERFGKLTVKSVYDFLRGKKDAEMGQSSDMNCI 359
           FH    ++I  + +    +  D + W  ++ G  +V+S Y       + E   SS  N I
Sbjct: 389 FHNLDAEVILNICISSR-SEEDFIAWHPDKNGMFSVRSAYRLAAQLVNIEESSSSGTNNI 447

Query: 360 --ALKQIWKTPLPAYIQMFV*ELCS 428
             A + IWK  +P  +++F   + S
Sbjct: 448 NKAWEMIWKCKVPQKVKIFAWRVAS 472


>gb|EEC73664.1| hypothetical protein OsI_08202 [Oryza sativa Indica Group]
          Length = 725

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
 Frame = +3

Query: 3   RIGQGTTTSILKDPWLKCLDKPVTLEELGVMGDSLSNLHVSDLFLADNSGWDSAKLSQHF 182
           RIG G +  + +DPW+     P       + G     +      L +N  WD+ K++Q F
Sbjct: 574 RIGNGRSIRVWRDPWV-----PRNFTRRPITGKRNCRIKWVSELLTENGAWDAVKVNQIF 628

Query: 183 HPFICQLIHEVVVRPEGATADKMIWAMERFGKLTVKSVYDFLRGKKDAEMGQSSD--MNC 356
            P   ++I  +++       D + W  ++FG+ +V+S Y   +  +  E   SS      
Sbjct: 629 LPIDAEVILHMLISSRD-EEDFIAWHSDKFGRFSVRSTYKLAQSLEQMEERASSSAASTT 687

Query: 357 IALKQIWKTPLPAYIQMF 410
           I    IWK  +P  +++F
Sbjct: 688 IPCNLIWKCNIPQKVKIF 705


>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa Japonica Group]
            gi|116309213|emb|CAH66305.1| OSIGBa0135K14.2 [Oryza
            sativa Indica Group] gi|116309230|emb|CAH66320.1|
            OSIGBa0150M16.3 [Oryza sativa Indica Group]
          Length = 1711

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3    RIGQGTTTSILKDPWLKCLDKPVTLEELGVMGDSLSNLH-VSDLFLADNSGWDSAKLSQH 179
            RIG G +  I +DPW+     P  L    V   +   L  VSDL +A++  WDSAK++Q+
Sbjct: 1409 RIGNGNSVRIWRDPWI-----PKDLSRRPVSSKANCRLKWVSDL-IAEDGTWDSAKINQY 1462

Query: 180  FHPFICQLIHEVVVRPEGATADKMIWAMERFGKLTVKSVYDF---LRGKKDAEMGQSSDM 350
            F      +I ++ +       D + W  ++ G+ +V+S Y     L    +     SS +
Sbjct: 1463 FLKIDADIIQKICISAR-LEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRL 1521

Query: 351  NCIALKQIWKTPLPAYIQMFV*ELCS 428
            N  + + IWK  +P  +++F   + S
Sbjct: 1522 N-KSWELIWKCNVPQKVRIFAWRVAS 1546


>gb|EEC77095.1| hypothetical protein OsI_15508 [Oryza sativa Indica Group]
          Length = 1296

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3    RIGQGTTTSILKDPWLKCLDKPVTLEELGVMGDSLSNLH-VSDLFLADNSGWDSAKLSQH 179
            RIG G +  I +DPW+     P  L    V   +   L  VSDL +A++  WDSAK++Q+
Sbjct: 1106 RIGNGNSVRIWRDPWI-----PKDLSRRPVSSKANCRLKWVSDL-IAEDGTWDSAKINQY 1159

Query: 180  FHPFICQLIHEVVVRPEGATADKMIWAMERFGKLTVKSVYDF---LRGKKDAEMGQSSDM 350
            F      +I ++ +       D + W  ++ G+ +V+S Y     L    +     SS +
Sbjct: 1160 FLKIDADIIQKICISAR-LEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRL 1218

Query: 351  NCIALKQIWKTPLPAYIQMFV*ELCS 428
            N  + + IWK  +P  +++F   + S
Sbjct: 1219 N-KSWELIWKCNVPQKVRIFAWRVAS 1243


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
 Frame = +3

Query: 3    RIGQGTTTSILKDPWLKCLDKPVTLEELGVMGDSLSNLH-VSDLFLADNSGWDSAKLSQH 179
            RIG G +  I +DPW+     P  L    V   +   L  VSDL +A++  WDSAK++Q+
Sbjct: 1565 RIGNGNSVRIWRDPWI-----PRDLSRRPVSSKANCRLKWVSDL-IAEDGTWDSAKINQY 1618

Query: 180  FHPFICQLIHEVVVRPEGATADKMIWAMERFGKLTVKSVYDF---LRGKKDAEMGQSSDM 350
            F      +I ++ +       D + W  ++ G+ +V+S Y     L    +     SS +
Sbjct: 1619 FLKIDADIIQKICISAR-LEEDFIAWHPDKTGRFSVRSAYKLALQLADMNNCSSSSSSRL 1677

Query: 351  NCIALKQIWKTPLPAYIQMFV*ELCS 428
            N  + + IWK  +P  +++F   + S
Sbjct: 1678 N-KSWELIWKCNVPQKVRIFAWRVAS 1702