BLASTX nr result

ID: Coptis24_contig00000113 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000113
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004147782.1| PREDICTED: DUF21 domain-containing protein A...    89   1e-20
ref|XP_002320632.1| predicted protein [Populus trichocarpa] gi|2...    88   2e-20
ref|XP_004154837.1| PREDICTED: LOW QUALITY PROTEIN: DUF21 domain...    88   3e-20
emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera]    86   1e-19
ref|XP_002282587.1| PREDICTED: DUF21 domain-containing protein A...    86   2e-19

>ref|XP_004147782.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Cucumis
           sativus]
          Length = 449

 Score = 89.0 bits (219), Expect(2) = 1e-20
 Identities = 44/79 (55%), Positives = 53/79 (67%)
 Frame = +2

Query: 26  AGVETAGVKQECCDSQTAFPSRKGYQQSDNCPPIAPGSKKRHRDCSYCILDVENSPIPEF 205
           A  +  G+K E  D+QT    + G  Q+   PP  P  KKRHR CS+CILDVEN+P+P F
Sbjct: 329 AAAQNIGMKMESVDAQTV-AEKAGGLQTKKSPPATPAFKKRHRGCSFCILDVENAPLPVF 387

Query: 206 SSNEQVVGVITMEDVIEEL 262
              E+VVGVITMEDVIEEL
Sbjct: 388 PLGEEVVGVITMEDVIEEL 406



 Score = 35.4 bits (80), Expect(2) = 1e-20
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +3

Query: 366 YVNIHNRIKINMQASQGKTNYLNSQEPSPTL 458
           YVNIHNRIKINMQ S  K + +N  + SP +
Sbjct: 418 YVNIHNRIKINMQPSPEKLS-INQPQLSPNV 447


>ref|XP_002320632.1| predicted protein [Populus trichocarpa] gi|222861405|gb|EEE98947.1|
           predicted protein [Populus trichocarpa]
          Length = 513

 Score = 87.8 bits (216), Expect(2) = 2e-20
 Identities = 49/86 (56%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
 Frame = +2

Query: 8   SGAIPNAGVETAGVKQECCDSQTAFPSRKGYQQSDNCPPIAPGS-KKRHRDCSYCILDVE 184
           + AIPN   + A +  +  D+QTA     G QQ    PP  P + KKRH+ CS+CILDVE
Sbjct: 344 TSAIPN---KKAALDSD--DNQTAATKNDGGQQIKKSPPSTPPAFKKRHKGCSFCILDVE 398

Query: 185 NSPIPEFSSNEQVVGVITMEDVIEEL 262
            +PIPEF SNE+VVGVITMEDVIEEL
Sbjct: 399 KAPIPEFPSNEEVVGVITMEDVIEEL 424



 Score = 35.8 bits (81), Expect(2) = 2e-20
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +3

Query: 366 YVNIHNRIKINMQASQGK 419
           YVNIHNRIKINM ASQ K
Sbjct: 436 YVNIHNRIKINMHASQDK 453


>ref|XP_004154837.1| PREDICTED: LOW QUALITY PROTEIN: DUF21 domain-containing protein
           At1g47330-like [Cucumis sativus]
          Length = 449

 Score = 87.8 bits (216), Expect(2) = 3e-20
 Identities = 44/79 (55%), Positives = 52/79 (65%)
 Frame = +2

Query: 26  AGVETAGVKQECCDSQTAFPSRKGYQQSDNCPPIAPGSKKRHRDCSYCILDVENSPIPEF 205
           A  +  G+K E  D+QT    + G  Q+   PP  P  KKRHR CS+CILDVEN P+P F
Sbjct: 329 AAAQNIGMKMESVDAQTV-AEKAGGLQTKKSPPATPAFKKRHRGCSFCILDVENVPLPVF 387

Query: 206 SSNEQVVGVITMEDVIEEL 262
              E+VVGVITMEDVIEEL
Sbjct: 388 PLGEEVVGVITMEDVIEEL 406



 Score = 35.4 bits (80), Expect(2) = 3e-20
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +3

Query: 366 YVNIHNRIKINMQASQGKTNYLNSQEPSPTL 458
           YVNIHNRIKINMQ S  K + +N  + SP +
Sbjct: 418 YVNIHNRIKINMQPSPEKLS-INQPQLSPNV 447


>emb|CAN75692.1| hypothetical protein VITISV_038533 [Vitis vinifera]
          Length = 1762

 Score = 85.9 bits (211), Expect(2) = 1e-19
 Identities = 45/73 (61%), Positives = 50/73 (68%)
 Frame = +2

Query: 44  GVKQECCDSQTAFPSRKGYQQSDNCPPIAPGSKKRHRDCSYCILDVENSPIPEFSSNEQV 223
           GVKQE  D+ TA       QQ    P + P  KKRHR CS+CILDVEN+P+PEF  NE  
Sbjct: 373 GVKQELHDAGTAVAKNDADQQQKKNPAV-PVFKKRHRGCSFCILDVENAPLPEFPPNEVA 431

Query: 224 VGVITMEDVIEEL 262
           VGVITMEDVIEEL
Sbjct: 432 VGVITMEDVIEEL 444



 Score = 35.0 bits (79), Expect(2) = 1e-19
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 366 YVNIHNRIKINMQASQGKTNYLNSQEPSPT 455
           YVNIHNRIK+NM AS  + +  NS  P P+
Sbjct: 456 YVNIHNRIKVNMHASSQEKD-PNSNXPQPS 484


>ref|XP_002282587.1| PREDICTED: DUF21 domain-containing protein At1g47330-like [Vitis
           vinifera]
          Length = 526

 Score = 85.9 bits (211), Expect(2) = 2e-19
 Identities = 45/73 (61%), Positives = 50/73 (68%)
 Frame = +2

Query: 44  GVKQECCDSQTAFPSRKGYQQSDNCPPIAPGSKKRHRDCSYCILDVENSPIPEFSSNEQV 223
           GVKQE  D+ TA       QQ    P + P  KKRHR CS+CILDVEN+P+PEF  NE  
Sbjct: 347 GVKQELHDAGTAVAKNDADQQQKKNPSV-PVFKKRHRGCSFCILDVENAPLPEFPPNEVA 405

Query: 224 VGVITMEDVIEEL 262
           VGVITMEDVIEEL
Sbjct: 406 VGVITMEDVIEEL 418



 Score = 34.7 bits (78), Expect(2) = 2e-19
 Identities = 20/36 (55%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 366 YVNIHNRIKINMQA-SQGKTNYLNSQEPSPTLLSKA 470
           YVNIHNRIK+NM A SQ K    N  +PS  + S A
Sbjct: 430 YVNIHNRIKVNMHASSQEKDPNSNLPQPSTKVSSIA 465


Top