BLASTX nr result
ID: Coptis24_contig00000107
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00000107
(2336 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264570.1| PREDICTED: large subunit GTPase 1 homolog [V... 758 0.0
ref|XP_002313500.1| predicted protein [Populus trichocarpa] gi|2... 721 0.0
ref|XP_004139607.1| PREDICTED: large subunit GTPase 1 homolog [C... 715 0.0
ref|XP_004146392.1| PREDICTED: large subunit GTPase 1 homolog [C... 706 0.0
ref|XP_004167322.1| PREDICTED: LOW QUALITY PROTEIN: large subuni... 690 0.0
>ref|XP_002264570.1| PREDICTED: large subunit GTPase 1 homolog [Vitis vinifera]
Length = 597
Score = 758 bits (1957), Expect = 0.0
Identities = 391/600 (65%), Positives = 445/600 (74%), Gaps = 6/600 (1%)
Frame = +2
Query: 110 MGKNEKTGLGRALVKQHNQMVIETKEKGRVYRNQSKKVLESVTEVTDXXXXXXXXXXXXR 289
MGKNEKTGLGRALVK HNQM+ ++ EKGR Y+NQ KKVLES+T+V D R
Sbjct: 1 MGKNEKTGLGRALVKHHNQMLQQSNEKGRFYKNQHKKVLESITDVNDIDAVIQEADEAQR 60
Query: 290 LYSTDHPAPNLPINLD---GVSEIPVEVQRQQRKMEEAEHESSLRVPRRPPWNAGMPVEE 460
L++ DHPAPN+ INLD S + E +R+Q+K EEA H SSLRVPRRPPWN GM EE
Sbjct: 61 LFAFDHPAPNVLINLDTNASTSNMTDEERREQQKKEEALHASSLRVPRRPPWNVGMTAEE 120
Query: 461 LDNNEKQAFLVWRRSLARLEENEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPL 640
LD NE+QA L+WRRSLARLE NE LVLTPFEKNLDIWRQLWRVLERSDL+VMVVDARDPL
Sbjct: 121 LDANERQALLIWRRSLARLEGNENLVLTPFEKNLDIWRQLWRVLERSDLLVMVVDARDPL 180
Query: 641 FYRCPDLEAYAREIDEHKETLLLVNKADLLPLALREKWAKYFHDNGILFLFWSAKAAYAA 820
FYRCPDLEAYA+EIDEHK+TLLLVNKADLLP ++RE+WAKYF +GILF+FWSAKAA AA
Sbjct: 181 FYRCPDLEAYAQEIDEHKKTLLLVNKADLLPFSVRERWAKYFRLHGILFIFWSAKAASAA 240
Query: 821 LEGKPLKGS-ENQSTLQNSDVTDTNIFGRDXXXXXXXXXXXXXXXTRGNIRXXXXXXXXX 997
LEGK L E Q LQ +D DT I+GRD +
Sbjct: 241 LEGKKLNVQWETQKPLQETDDADTKIYGRDELLARLQSEAEEISVRKRKSSSSSTDSSHV 300
Query: 998 XXXXXXXXXXXXXXXXXXGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISD 1177
GFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISD
Sbjct: 301 QFHGGHVAGNSTSRSVVVGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISD 360
Query: 1178 ELMLCDCPGLVFPSFTTSRYEMVASGVLPIDRMTQHREAVQVVANRVPRDAIEEVYNITL 1357
EL LCDCPGLVFPSF++SRYEM+ASGVLPIDRMT+HREAVQVVANRVPR IE+VY ITL
Sbjct: 361 ELTLCDCPGLVFPSFSSSRYEMIASGVLPIDRMTEHREAVQVVANRVPRHVIEDVYKITL 420
Query: 1358 PKPKPYESQTRPPLAAELLRAYCSSRGYVASSGLPDETKAARLILKDYLDGKLPHFEFPP 1537
PKPKPYE Q RPPLA+E LRAYC+SRGYVASSGLPDET+AAR ILKDY+DGK+PHFE PP
Sbjct: 421 PKPKPYEQQNRPPLASEFLRAYCASRGYVASSGLPDETRAARQILKDYIDGKVPHFEMPP 480
Query: 1538 GMPNKDDQEVDTLELGTSPAYETDSSDAEN--NSATEGTSTNNLEFVLNDLESFDITNGL 1711
GM ++ + D E S +E+D+SD+EN NS +E S NLE VLNDL++FD+ NGL
Sbjct: 481 GMTDEVSEFEDPAEPSFSETHESDASDSENPPNSESESESAPNLEHVLNDLDAFDMANGL 540
Query: 1712 XXXXXXXXXXXXXXXXXXXSYKQHKKPQRKKNRSWRVGNEETDGMPILKVFQKPINSGPL 1891
+KQHKKPQRKK+RSWRV N+E DGMP+ +VFQKP+N+GPL
Sbjct: 541 ------ASKKAPVQKTPKAPHKQHKKPQRKKDRSWRVKNDEDDGMPVARVFQKPVNTGPL 594
>ref|XP_002313500.1| predicted protein [Populus trichocarpa] gi|222849908|gb|EEE87455.1|
predicted protein [Populus trichocarpa]
Length = 603
Score = 721 bits (1861), Expect = 0.0
Identities = 378/604 (62%), Positives = 437/604 (72%), Gaps = 9/604 (1%)
Frame = +2
Query: 110 MGKNEKTGLGRALVKQHNQMVIETKEKGRVYRNQSKKVLESVTEVTDXXXXXXXXXXXXR 289
MGKNEKT LGRALVK HNQM+ E+KEKGR Y++Q KKVLES T+VT+
Sbjct: 1 MGKNEKTRLGRALVKHHNQMIQESKEKGRYYKSQHKKVLESFTDVTEIDAVMEQVDEGEL 60
Query: 290 LYSTD----HPAPNLPINLD---GVSEIPVEVQRQQRKMEEAEHESSLR-VPRRPPWNAG 445
S+ HP PNL INLD GVS++ E +R+++K EEA H SSLR + + PPWNAG
Sbjct: 61 FSSSSSSVHHPVPNLLINLDTGSGVSDMTAEEKREKQKKEEALHASSLRFLSKMPPWNAG 120
Query: 446 MPVEELDNNEKQAFLVWRRSLARLEENEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVD 625
M VEELD NEKQAFL WRRSLA LEENE LVLTPFEKNLDIWRQLWRVLERSDL+VMVVD
Sbjct: 121 MSVEELDANEKQAFLTWRRSLASLEENENLVLTPFEKNLDIWRQLWRVLERSDLLVMVVD 180
Query: 626 ARDPLFYRCPDLEAYAREIDEHKETLLLVNKADLLPLALREKWAKYFHDNGILFLFWSAK 805
ARDPLFYRCPDLEAYAREIDEHK TLLLVNKADLLP ++R+KWA YF GILFLFWSAK
Sbjct: 181 ARDPLFYRCPDLEAYAREIDEHKRTLLLVNKADLLPFSVRQKWADYFRHLGILFLFWSAK 240
Query: 806 AAYAALEGKPLKGSEN-QSTLQNSDVTDTNIFGRDXXXXXXXXXXXXXXXTRGNIRXXXX 982
AA A LEGK L+G N Q+TLQ D DT I+GRD R
Sbjct: 241 AATAVLEGKILQGPWNEQATLQEMDDPDTKIYGRDELLARLQSEAETIVRIRSKSVSSGS 300
Query: 983 XXXXXXXXXXXXXXXXXXXXXXXGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQT 1162
GFVGYPNVGKSSTINALVG+KRTGVTSTPGKTKHFQT
Sbjct: 301 GPSNFQSSGGKFAGNSAPKHVVVGFVGYPNVGKSSTINALVGQKRTGVTSTPGKTKHFQT 360
Query: 1163 LIISDELMLCDCPGLVFPSFTTSRYEMVASGVLPIDRMTQHREAVQVVANRVPRDAIEEV 1342
LI+S++L LCDCPGLVFPSF++SRYEM+ASGVLPIDRMT+HREAVQVVANRVPR IE+V
Sbjct: 361 LIMSEKLTLCDCPGLVFPSFSSSRYEMIASGVLPIDRMTEHREAVQVVANRVPRRVIEDV 420
Query: 1343 YNITLPKPKPYESQTRPPLAAELLRAYCSSRGYVASSGLPDETKAARLILKDYLDGKLPH 1522
Y I LPKPKPYE Q+RPPLA+ELLR YC+SRGYV SSGLPDET+AAR ILKDY+DGKL H
Sbjct: 421 YKINLPKPKPYEPQSRPPLASELLRTYCASRGYVGSSGLPDETRAARQILKDYIDGKLTH 480
Query: 1523 FEFPPGMPNKDDQEVDTLELGTSPAYETDSSDAENNSATEGTSTNNLEFVLNDLESFDIT 1702
E PPG+ +++ + D S +++DSSD EN + +G +T LE VL+DL SFD+
Sbjct: 481 HEIPPGISDEEGSDQDDAGSSLSETHQSDSSDTENPAENDGKNTPALEHVLDDLNSFDMA 540
Query: 1703 NGLXXXXXXXXXXXXXXXXXXXSYKQHKKPQRKKNRSWRVGNEETDGMPILKVFQKPINS 1882
NGL S+K HKKPQ+KK+RSWR+ N+ DGMP+++VFQK +N+
Sbjct: 541 NGL---AHKKVTVKKPSASASASHKHHKKPQKKKDRSWRIENDGGDGMPVVRVFQKSVNT 597
Query: 1883 GPLK 1894
GPLK
Sbjct: 598 GPLK 601
>ref|XP_004139607.1| PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus]
Length = 588
Score = 715 bits (1845), Expect = 0.0
Identities = 375/601 (62%), Positives = 439/601 (73%), Gaps = 5/601 (0%)
Frame = +2
Query: 110 MGKNEKTGLGRALVKQHNQMVIETKEKGRVYRNQSKKVLESVTEVTDXXXXXXXXXXXXR 289
M +N+K GLGRALVKQHNQM+ ++KEKGR Y++Q KKVLESVTEV+D R
Sbjct: 1 MRRNDKMGLGRALVKQHNQMIQQSKEKGRFYKSQQKKVLESVTEVSDIDAVIQQADEAER 60
Query: 290 LYSTDHPAPNLPINLDG---VSEIPVEVQRQQRKMEEAEHESSLRVPRRPPWNAGMPVEE 460
L+S D+P PN INLDG VSE+ + +R Q+K+EEA H SSLRVPRRPPWNA M EE
Sbjct: 61 LFSIDNPTPNFLINLDGSSSVSEMTLVERRDQQKIEEALHASSLRVPRRPPWNARMSAEE 120
Query: 461 LDNNEKQAFLVWRRSLARLEENEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPL 640
LD+NE+Q+FL+WRRSLARLE NE LVLTPFEKNLDIWRQLWRV+ER DL+VMVVDARDPL
Sbjct: 121 LDDNERQSFLIWRRSLARLEGNENLVLTPFEKNLDIWRQLWRVVERCDLLVMVVDARDPL 180
Query: 641 FYRCPDLEAYAREIDEHKETLLLVNKADLLPLALREKWAKYFHDNGILFLFWSAKAAYAA 820
FYRCPDLEAYARE+D+HK T+LLVNKADLLP ++R+KWA++F+ + IL+LFWSAKAA A
Sbjct: 181 FYRCPDLEAYAREVDQHKRTMLLVNKADLLPYSVRKKWAEFFNQHEILYLFWSAKAASAT 240
Query: 821 LEGKPLKGSENQSTLQNS-DVTDTNIFGRDXXXXXXXXXXXXXXXTRGNIRXXXXXXXXX 997
LEG+ L N + QN D DT I+ RD R + R
Sbjct: 241 LEGRKLGSGWNTNEPQNGVDDPDTKIYARDELLSRLQYEAERIVERRASSRSDNLSLEGC 300
Query: 998 XXXXXXXXXXXXXXXXXXGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISD 1177
GFVGYPNVGKSSTINALVG+KR GVTSTPGKTKHFQTLIISD
Sbjct: 301 MNEKSSGSVMV-------GFVGYPNVGKSSTINALVGQKRAGVTSTPGKTKHFQTLIISD 353
Query: 1178 ELMLCDCPGLVFPSFTTSRYEMVASGVLPIDRMTQHREAVQVVANRVPRDAIEEVYNITL 1357
+L LCDCPGLVFPSF++SRYEM+A GVLPIDRMT+HREAVQVVANRVPR IE+VY ITL
Sbjct: 354 KLTLCDCPGLVFPSFSSSRYEMIAYGVLPIDRMTEHREAVQVVANRVPRHVIEDVYKITL 413
Query: 1358 PKPKPYESQTRPPLAAELLRAYCSSRGYVASSGLPDETKAARLILKDYLDGKLPHFEFPP 1537
PKPKPYE Q+RPPLA+ELL+AYC SRGYVASSGLPDET+A+R ILKDY+DGK+PH E PP
Sbjct: 414 PKPKPYEPQSRPPLASELLKAYCVSRGYVASSGLPDETRASRQILKDYVDGKIPHHELPP 473
Query: 1538 GMPNKDD-QEVDTLELGTSPAYETDSSDAENNSATEGTSTNNLEFVLNDLESFDITNGLX 1714
GM +D QE D S +++DS D E +S +G S E V++ L+SFDI NGL
Sbjct: 474 GMLKEDHIQEEDARSFELSDTHDSDSDDVE-DSNMDGESAPGFEQVVDYLDSFDIANGL- 531
Query: 1715 XXXXXXXXXXXXXXXXXXSYKQHKKPQRKKNRSWRVGNEETDGMPILKVFQKPINSGPLK 1894
S+KQHKKPQRKK+RSWRVGN+ DGMP ++V QKPINSG LK
Sbjct: 532 ------AKPSITEKKPKASHKQHKKPQRKKDRSWRVGNDGGDGMPAVRVLQKPINSGTLK 585
Query: 1895 A 1897
A
Sbjct: 586 A 586
>ref|XP_004146392.1| PREDICTED: large subunit GTPase 1 homolog [Cucumis sativus]
Length = 588
Score = 706 bits (1823), Expect = 0.0
Identities = 367/602 (60%), Positives = 435/602 (72%), Gaps = 7/602 (1%)
Frame = +2
Query: 110 MGKNEKTGLGRALVKQHNQMVIETKEKGRVYRNQSKKVLESVTEVTDXXXXXXXXXXXXR 289
MGKN+K GLGRALVKQHNQM+ ++KEKGR Y++Q KKVLESVTEV+D R
Sbjct: 1 MGKNDKMGLGRALVKQHNQMIQQSKEKGRFYKSQQKKVLESVTEVSDIDAVIQQADEAER 60
Query: 290 LYSTDHPAPNLPINLDG---VSEIPVEVQRQQRKMEEAEHESSLRVPRRPPWNAGMPVEE 460
L+S D+P PN INLDG +SE+ +R+Q+K+EEA H SSLRVPRRPPWNA M EE
Sbjct: 61 LFSIDNPTPNFLINLDGSSSISEMTPAERREQQKIEEALHASSLRVPRRPPWNARMSAEE 120
Query: 461 LDNNEKQAFLVWRRSLARLEENEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPL 640
LD+NE+Q+FL+WRRSLARLEENE LVLTPFEKNLDIWRQLWRV+ER DL+VMVVDARDPL
Sbjct: 121 LDDNERQSFLIWRRSLARLEENENLVLTPFEKNLDIWRQLWRVVERCDLLVMVVDARDPL 180
Query: 641 FYRCPDLEAYAREIDEHKETLLLVNKADLLPLALREKWAKYFHDNGILFLFWSAKAAYAA 820
FYRCPDLEAYARE+D+HK T+LLVNKADLL ++R+KWA++F + IL+LFWSAKAA A
Sbjct: 181 FYRCPDLEAYAREVDQHKRTMLLVNKADLLSYSVRKKWAEFFSQHDILYLFWSAKAASAT 240
Query: 821 LEGKPLKGSENQSTLQNS-DVTDTNIFGRDXXXXXXXXXXXXXXXTRGNIRXXXXXXXXX 997
L+GK L N + QN D DT I+ RD R +
Sbjct: 241 LDGKKLSTQWNTNEPQNGVDDPDTKIYARDELLARLQYEAEQIVERRTS--STNSTSRSD 298
Query: 998 XXXXXXXXXXXXXXXXXXGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISD 1177
GFVGYPNVGKSSTINALVG+KR GVTSTPGKTKHFQTLIISD
Sbjct: 299 NLSQGGKMNKKSPGSVMVGFVGYPNVGKSSTINALVGQKRAGVTSTPGKTKHFQTLIISD 358
Query: 1178 ELMLCDCPGLVFPSFTTSRYEMVASGVLPIDRMTQHREAVQVVANRVPRDAIEEVYNITL 1357
+L LCDCPGLVFPSF++SRYEM+A GVLPIDRMT+HREA+QVVANRVPR IE+VY I L
Sbjct: 359 KLTLCDCPGLVFPSFSSSRYEMIAYGVLPIDRMTEHREAIQVVANRVPRHVIEDVYKIKL 418
Query: 1358 PKPKPYESQTRPPLAAELLRAYCSSRGYVASSGLPDETKAARLILKDYLDGKLPHFEFPP 1537
PKPKPYE Q++PPLA+ELL+AYC SRGYVASSGLPDET+A+R ILKDY+DGK+PH E PP
Sbjct: 419 PKPKPYEPQSQPPLASELLKAYCVSRGYVASSGLPDETRASRQILKDYVDGKIPHHELPP 478
Query: 1538 GMPNKD---DQEVDTLELGTSPAYETDSSDAENNSATEGTSTNNLEFVLNDLESFDITNG 1708
GM N+D +++ +TL+L + ++DS D EN E V + L+SFD+ NG
Sbjct: 479 GMSNEDHIQEEDAETLKLSATHDSDSDSDDGENGP--------GFEQVADYLDSFDLANG 530
Query: 1709 LXXXXXXXXXXXXXXXXXXXSYKQHKKPQRKKNRSWRVGNEETDGMPILKVFQKPINSGP 1888
L S+K HKKPQRKK RSWR+GN+ DGMP ++V QKPINSGP
Sbjct: 531 L-----AKPNIITEKKAKASSHKHHKKPQRKKERSWRMGNDGGDGMPAVRVLQKPINSGP 585
Query: 1889 LK 1894
LK
Sbjct: 586 LK 587
>ref|XP_004167322.1| PREDICTED: LOW QUALITY PROTEIN: large subunit GTPase 1 homolog,
partial [Cucumis sativus]
Length = 573
Score = 690 bits (1781), Expect = 0.0
Identities = 363/586 (61%), Positives = 424/586 (72%), Gaps = 5/586 (0%)
Frame = +2
Query: 155 QHNQMVIETKEKGRVYRNQSKKVLESVTEVTDXXXXXXXXXXXXRLYSTDHPAPNLPINL 334
QHNQM+ ++KEKGR Y++Q KKVLESVTEV+D RL+S D+P PN INL
Sbjct: 1 QHNQMIQQSKEKGRFYKSQQKKVLESVTEVSDIDAVIQQADEAERLFSIDNPTPNFLINL 60
Query: 335 DG---VSEIPVEVQRQQRKMEEAEHESSLRVPRRPPWNAGMPVEELDNNEKQAFLVWRRS 505
DG VSE+ + +R Q+K+EEA H SSLRVPRRPPWNA M EELD+NE+Q+FL+WRRS
Sbjct: 61 DGSSSVSEMTLVERRDQQKIEEALHASSLRVPRRPPWNARMSAEELDDNERQSFLIWRRS 120
Query: 506 LARLEENEKLVLTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAREID 685
LARLE NE LVLTPFEKNLDIWRQLWRV+ER DL+VMVVDARDPLFYRCPDLEAYARE+D
Sbjct: 121 LARLEGNENLVLTPFEKNLDIWRQLWRVVERCDLLVMVVDARDPLFYRCPDLEAYAREVD 180
Query: 686 EHKETLLLVNKADLLPLALREKWAKYFHDNGILFLFWSAKAAYAALEGKPLKGSENQSTL 865
+HK T+LLVNKADLLP ++R+KWA++F+ + IL+LFWSAKAA A LEG+ L N +
Sbjct: 181 QHKRTMLLVNKADLLPYSVRKKWAEFFNQHEILYLFWSAKAASATLEGRKLGSGWNTNEP 240
Query: 866 QNS-DVTDTNIFGRDXXXXXXXXXXXXXXXTRGNIRXXXXXXXXXXXXXXXXXXXXXXXX 1042
QN D DT I+ RD R + R
Sbjct: 241 QNGVDDPDTKIYARDELLSRLQYEAERIVERRASSRSDNLSLEGCMNEKSSGSVMV---- 296
Query: 1043 XXXGFVGYPNVGKSSTINALVGEKRTGVTSTPGKTKHFQTLIISDELMLCDCPGLVFPSF 1222
GFVGYPNVGKSSTINALVG KR GVTSTPGKTKHFQTLIISD+L LCDCPGLVFPSF
Sbjct: 297 ---GFVGYPNVGKSSTINALVGXKRAGVTSTPGKTKHFQTLIISDKLTLCDCPGLVFPSF 353
Query: 1223 TTSRYEMVASGVLPIDRMTQHREAVQVVANRVPRDAIEEVYNITLPKPKPYESQTRPPLA 1402
++SRYEM+A GVLPIDRMT+HREAVQVVANRVPR IE+VY ITLPKPKPYE Q+RPPLA
Sbjct: 354 SSSRYEMIAYGVLPIDRMTEHREAVQVVANRVPRHVIEDVYKITLPKPKPYEPQSRPPLA 413
Query: 1403 AELLRAYCSSRGYVASSGLPDETKAARLILKDYLDGKLPHFEFPPGMPNKDD-QEVDTLE 1579
+ELL+AYC SRGYVASSGLPDET+A+R ILKDY+DGK+PH E PPGM +D QE D
Sbjct: 414 SELLKAYCVSRGYVASSGLPDETRASRQILKDYVDGKIPHHELPPGMLKEDHIQEEDARS 473
Query: 1580 LGTSPAYETDSSDAENNSATEGTSTNNLEFVLNDLESFDITNGLXXXXXXXXXXXXXXXX 1759
S +++DS D E +S +G S E V++ L+SFDI NGL
Sbjct: 474 FELSDTHDSDSDDVE-DSNMDGESAPGFEQVVDYLDSFDIANGL-------AKPSITEKK 525
Query: 1760 XXXSYKQHKKPQRKKNRSWRVGNEETDGMPILKVFQKPINSGPLKA 1897
S+KQHKKPQ KK+RSWRVGN+ DGMP ++V QKPINSG LKA
Sbjct: 526 PKASHKQHKKPQXKKDRSWRVGNDGGDGMPAVRVLQKPINSGTLKA 571