BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000057
         (682 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAL76994.1| RNA binding protein [Elaeis oleifera]                   59   5e-10
gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum]    62   5e-10
gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum]    59   3e-09
ref|XP_004159468.1| PREDICTED: LOW QUALITY PROTEIN: MKI67 FHA do...    59   6e-09
ref|XP_004140894.1| PREDICTED: MKI67 FHA domain-interacting nucl...    59   6e-09

>gb|AAL76994.1| RNA binding protein [Elaeis oleifera]
          Length = 218

 Score = 58.5 bits (140), Expect(2) = 5e-10
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = -1

Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464
           GVNR   P +W  I RKQHNKER + EH+++V+G++        +I+AAG DY  P+ V
Sbjct: 143 GVNRRFKPVDWKAIARKQHNKERTLEEHQRMVKGILKRNEKRHKRIKAAGIDYECPDFV 201



 Score = 31.2 bits (69), Expect(2) = 5e-10
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = -2

Query: 681 QVHLIPPERVHPKLV 637
           Q+ LIPPERVHPKLV
Sbjct: 127 QLSLIPPERVHPKLV 141


>gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum]
          Length = 217

 Score = 61.6 bits (148), Expect(2) = 5e-10
 Identities = 29/63 (46%), Positives = 41/63 (65%)
 Frame = -1

Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIVS 461
           GVNR   P +W +I RK+ +KER + +H+KLVEG++        +IEAAG DY  PE+V 
Sbjct: 144 GVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYECPEMVG 203

Query: 460 ASH 452
           + H
Sbjct: 204 SIH 206



 Score = 28.1 bits (61), Expect(2) = 5e-10
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 681 QVHLIPPERVHPKL 640
           QV LIPPE VHP+L
Sbjct: 128 QVQLIPPEHVHPRL 141


>gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum]
          Length = 217

 Score = 59.3 bits (142), Expect(2) = 3e-09
 Identities = 28/61 (45%), Positives = 40/61 (65%)
 Frame = -1

Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIVS 461
           GVNR   P +W +I RK+ +KER + +H+KLVEG++        +IEAAG DY  PE+V 
Sbjct: 144 GVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYECPEMVG 203

Query: 460 A 458
           +
Sbjct: 204 S 204



 Score = 28.1 bits (61), Expect(2) = 3e-09
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 681 QVHLIPPERVHPKL 640
           QV LIPPE VHP+L
Sbjct: 128 QVQLIPPEHVHPRL 141


>ref|XP_004159468.1| PREDICTED: LOW QUALITY PROTEIN: MKI67 FHA domain-interacting
           nucleolar phosphoprotein-like [Cucumis sativus]
          Length = 212

 Score = 58.5 bits (140), Expect(2) = 6e-09
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = -1

Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464
           G N    P NW+E+ RK HNKER + EH+KLV+ ++        +I AAG DY  PEIV
Sbjct: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 197



 Score = 27.7 bits (60), Expect(2) = 6e-09
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 681 QVHLIPPERVHPKL 640
           +VHLI PE VHPKL
Sbjct: 123 KVHLIDPEHVHPKL 136


>ref|XP_004140894.1| PREDICTED: MKI67 FHA domain-interacting nucleolar
           phosphoprotein-like [Cucumis sativus]
          Length = 212

 Score = 58.5 bits (140), Expect(2) = 6e-09
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = -1

Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464
           G N    P NW+E+ RK HNKER + EH+KLV+ ++        +I AAG DY  PEIV
Sbjct: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 197



 Score = 27.7 bits (60), Expect(2) = 6e-09
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -2

Query: 681 QVHLIPPERVHPKL 640
           +VHLI PE VHPKL
Sbjct: 123 KVHLIDPEHVHPKL 136