BLASTX nr result
ID: Coptis24_contig00000057
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis24_contig00000057 (682 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAL76994.1| RNA binding protein [Elaeis oleifera] 59 5e-10 gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum] 62 5e-10 gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum] 59 3e-09 ref|XP_004159468.1| PREDICTED: LOW QUALITY PROTEIN: MKI67 FHA do... 59 6e-09 ref|XP_004140894.1| PREDICTED: MKI67 FHA domain-interacting nucl... 59 6e-09 >gb|AAL76994.1| RNA binding protein [Elaeis oleifera] Length = 218 Score = 58.5 bits (140), Expect(2) = 5e-10 Identities = 27/59 (45%), Positives = 38/59 (64%) Frame = -1 Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464 GVNR P +W I RKQHNKER + EH+++V+G++ +I+AAG DY P+ V Sbjct: 143 GVNRRFKPVDWKAIARKQHNKERTLEEHQRMVKGILKRNEKRHKRIKAAGIDYECPDFV 201 Score = 31.2 bits (69), Expect(2) = 5e-10 Identities = 13/15 (86%), Positives = 14/15 (93%) Frame = -2 Query: 681 QVHLIPPERVHPKLV 637 Q+ LIPPERVHPKLV Sbjct: 127 QLSLIPPERVHPKLV 141 >gb|AFW90620.1| RNA binding protein-like protein [Solanum tuberosum] Length = 217 Score = 61.6 bits (148), Expect(2) = 5e-10 Identities = 29/63 (46%), Positives = 41/63 (65%) Frame = -1 Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIVS 461 GVNR P +W +I RK+ +KER + +H+KLVEG++ +IEAAG DY PE+V Sbjct: 144 GVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYECPEMVG 203 Query: 460 ASH 452 + H Sbjct: 204 SIH 206 Score = 28.1 bits (61), Expect(2) = 5e-10 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 Query: 681 QVHLIPPERVHPKL 640 QV LIPPE VHP+L Sbjct: 128 QVQLIPPEHVHPRL 141 >gb|ABB87134.1| RNA binding protein-like protein [Solanum tuberosum] Length = 217 Score = 59.3 bits (142), Expect(2) = 3e-09 Identities = 28/61 (45%), Positives = 40/61 (65%) Frame = -1 Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIVS 461 GVNR P +W +I RK+ +KER + +H+KLVEG++ +IEAAG DY PE+V Sbjct: 144 GVNRWYKPLDWVKIERKRQDKERTLDDHKKLVEGILKRDKKRRKRIEAAGIDYECPEMVG 203 Query: 460 A 458 + Sbjct: 204 S 204 Score = 28.1 bits (61), Expect(2) = 3e-09 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 Query: 681 QVHLIPPERVHPKL 640 QV LIPPE VHP+L Sbjct: 128 QVQLIPPEHVHPRL 141 >ref|XP_004159468.1| PREDICTED: LOW QUALITY PROTEIN: MKI67 FHA domain-interacting nucleolar phosphoprotein-like [Cucumis sativus] Length = 212 Score = 58.5 bits (140), Expect(2) = 6e-09 Identities = 28/59 (47%), Positives = 36/59 (61%) Frame = -1 Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464 G N P NW+E+ RK HNKER + EH+KLV+ ++ +I AAG DY PEIV Sbjct: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 197 Score = 27.7 bits (60), Expect(2) = 6e-09 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 Query: 681 QVHLIPPERVHPKL 640 +VHLI PE VHPKL Sbjct: 123 KVHLIDPEHVHPKL 136 >ref|XP_004140894.1| PREDICTED: MKI67 FHA domain-interacting nucleolar phosphoprotein-like [Cucumis sativus] Length = 212 Score = 58.5 bits (140), Expect(2) = 6e-09 Identities = 28/59 (47%), Positives = 36/59 (61%) Frame = -1 Query: 640 GVNRIRAPPNWTEITRKQHNKERAVGEHRKLVEGVVXXXXXXXXKIEAAGFDYVPPEIV 464 G N P NW+E+ RK HNKER + EH+KLV+ ++ +I AAG DY PEIV Sbjct: 139 GFNYRHRPLNWSELERKHHNKERTLEEHKKLVDRILKRDQARQKRIRAAGIDYECPEIV 197 Score = 27.7 bits (60), Expect(2) = 6e-09 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 Query: 681 QVHLIPPERVHPKL 640 +VHLI PE VHPKL Sbjct: 123 KVHLIDPEHVHPKL 136