BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000017
         (520 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...   242   2e-62
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]   242   2e-62
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...   214   5e-54
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   213   1e-53
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   212   2e-53

>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score =  242 bits (618), Expect = 2e-62
 Identities = 118/173 (68%), Positives = 145/173 (83%)
 Frame = +2

Query: 2   FCKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPG 181
           FCKAGMVDVAL+LY+SR++FGLS NS+AYNYLINTLCGDGS DEAY VL  S++QGYFPG
Sbjct: 398 FCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTDEAYHVLKHSLEQGYFPG 457

Query: 182 KRTTCILADALCREGKLDKMKELVLMSLELNIMQSEAVCVKFISALCKARRVEDGYCIHG 361
           K+T  ILADALC+EGKLDKMKELVL++L+ NIM S +   KFI ALCKARRV+DGY I G
Sbjct: 458 KKTFSILADALCQEGKLDKMKELVLVALDRNIMPSASTYDKFILALCKARRVDDGYLIQG 517

Query: 362 QLKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQENGHRPTRKMYRAVI 520
           +L + +KV+ + TY ++I GFN  NR D+++RLLIE+QE GH PTR ++RAVI
Sbjct: 518 ELNKINKVASKNTYFNMIRGFNILNRADIAARLLIELQEKGHTPTRSLFRAVI 570



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
 Frame = +2

Query: 2   FCKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPG 181
           +  AG  ++AL L+      GL L+S AY+ L+N L  +   D A+RV+++ I+      
Sbjct: 186 YAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFD-AFRVVVEQIRMRGLDN 244

Query: 182 KRTTCILADALCREGKLDKMKELVLMSLELNI--MQSEAVCVKFISALCKARRVEDGYCI 355
           + T  I+    C++G+LD+ K  V   +E     +    +    + ALCK +R  +   +
Sbjct: 245 EITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGRL 304

Query: 356 HGQLKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQEN-GHRPTRKMYRAVI 520
             + +    VS    Y   I    RA R D +   L   +E+ G+ P    Y  +I
Sbjct: 305 VEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEVCGYNILI 360


>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score =  242 bits (618), Expect = 2e-62
 Identities = 118/173 (68%), Positives = 145/173 (83%)
 Frame = +2

Query: 2   FCKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPG 181
           FCKAGMVDVAL+LY+SR++FGLS NS+AYNYLINTLCGDGS DEAY VL  S++QGYFPG
Sbjct: 398 FCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTDEAYHVLKHSLEQGYFPG 457

Query: 182 KRTTCILADALCREGKLDKMKELVLMSLELNIMQSEAVCVKFISALCKARRVEDGYCIHG 361
           K+T  ILADALC+EGKLDKMKELVL++L+ NIM S +   KFI ALCKARRV+DGY I G
Sbjct: 458 KKTFSILADALCQEGKLDKMKELVLVALDRNIMPSASTYDKFILALCKARRVDDGYLIQG 517

Query: 362 QLKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQENGHRPTRKMYRAVI 520
           +L + +KV+ + TY ++I GFN  NR D+++RLLIE+QE GH PTR ++RAVI
Sbjct: 518 ELNKINKVASKNTYFNMIRGFNILNRADIAARLLIELQEKGHTPTRSLFRAVI 570



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
 Frame = +2

Query: 2   FCKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPG 181
           +  AG  ++AL L+      GL L+S AY+ L+N L  +   D A+RV+++ I+      
Sbjct: 186 YAVAGKPEIALQLFAKMRFQGLDLDSFAYHVLLNALVEENCFD-AFRVVVEQIRMRGLDN 244

Query: 182 KRTTCILADALCREGKLDKMKELVLMSLELNI--MQSEAVCVKFISALCKARRVEDGYCI 355
           + T  I+    C++G+LD+ K  V   +E     +    +    + ALCK +R  +   +
Sbjct: 245 EITHSIIVKNFCKQGQLDEAKAFVEQLVESGRVGLSGGHMVGLIVDALCKRKRFGEAGRL 304

Query: 356 HGQLKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQEN-GHRPTRKMYRAVI 520
             + +    VS    Y   I    RA R D +   L   +E+ G+ P    Y  +I
Sbjct: 305 VEEFQGSGMVSVEQAYGVWIRDLVRAGRLDGALEFLHSKKESEGYVPEVCGYNILI 360


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score =  214 bits (546), Expect = 5e-54
 Identities = 107/172 (62%), Positives = 134/172 (77%)
 Frame = +2

Query: 5   CKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPGK 184
           CKAGMV+VAL+LY+S  +FG+S N++AYNYLIN LC DGS DEAYR+L  SI +GYFPGK
Sbjct: 423 CKAGMVEVALELYNSNFEFGISPNTMAYNYLINALCRDGSTDEAYRILKCSIYEGYFPGK 482

Query: 185 RTTCILADALCREGKLDKMKELVLMSLELNIMQSEAVCVKFISALCKARRVEDGYCIHGQ 364
           +T  ILA ALCREGKLDKMKELV+ +LE N M +++   KFI ALC+ARRVEDGY IH +
Sbjct: 483 KTFSILASALCREGKLDKMKELVIFALERNCMPNDSTYDKFIYALCRARRVEDGYLIHCE 542

Query: 365 LKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQENGHRPTRKMYRAVI 520
           L R + V+ R TY  LI GF ++ R D+++RLLIEM E GH P R ++R+VI
Sbjct: 543 LNRINVVATRSTYFVLIEGFIKSGRGDIAARLLIEMLEKGHNPPRGLFRSVI 594


>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  213 bits (543), Expect = 1e-53
 Identities = 103/173 (59%), Positives = 136/173 (78%)
 Frame = +2

Query: 2   FCKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPG 181
           FCKAGMVDVALDLY+ +S+FGLS +++  NYLIN+LC +G+VD+AY VL  S + GYFPG
Sbjct: 412 FCKAGMVDVALDLYNCKSEFGLSPSTMTCNYLINSLCREGNVDDAYHVLKSSSEHGYFPG 471

Query: 182 KRTTCILADALCREGKLDKMKELVLMSLELNIMQSEAVCVKFISALCKARRVEDGYCIHG 361
           KR   +L DAL REGK++ M EL   +LE N + S+++  KFISALCKARR+EDGY IHG
Sbjct: 472 KRAFSMLTDALHREGKVEMMNELFFWALERNFIPSDSMYDKFISALCKARRLEDGYLIHG 531

Query: 362 QLKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQENGHRPTRKMYRAVI 520
           +L R ++V+ + TY +LIHGFN+ NR D+++RLLIEMQ+ GH P R ++RAVI
Sbjct: 532 ELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARLLIEMQDKGHLPARTLFRAVI 584


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score =  212 bits (540), Expect = 2e-53
 Identities = 106/172 (61%), Positives = 133/172 (77%)
 Frame = +2

Query: 5   CKAGMVDVALDLYHSRSDFGLSLNSLAYNYLINTLCGDGSVDEAYRVLLDSIKQGYFPGK 184
           CKAGMV+VAL+LY+S  +FG+S N++AYNYLIN LC DGS DEAYR+L  SI +GYFPGK
Sbjct: 399 CKAGMVEVALELYNSNFEFGISPNTMAYNYLINALCRDGSTDEAYRILKCSIYEGYFPGK 458

Query: 185 RTTCILADALCREGKLDKMKELVLMSLELNIMQSEAVCVKFISALCKARRVEDGYCIHGQ 364
           +   ILA ALCREGKLDKMKELV+ +LE N M +++   KFI ALC+ARRVEDGY IH +
Sbjct: 459 KXFSILASALCREGKLDKMKELVIFALERNCMPNDSTYDKFIYALCRARRVEDGYLIHCE 518

Query: 365 LKRHDKVSYRYTYLDLIHGFNRANRRDMSSRLLIEMQENGHRPTRKMYRAVI 520
           L R + V+ R TY  LI GF ++ R D+++RLLIEM E GH P R ++R+VI
Sbjct: 519 LNRINVVATRSTYFVLIEGFIKSGRGDIAARLLIEMLEKGHNPPRGLFRSVI 570