BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00000012
         (1005 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containi...   374   e-101
ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containi...   367   2e-99
ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata] g...   336   5e-90
ref|NP_567622.1| pentatricopeptide repeat-containing protein [Ar...   336   6e-90
ref|XP_002513638.1| pentatricopeptide repeat-containing protein,...   333   5e-89

>ref|XP_002274318.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21190
           [Vitis vinifera] gi|302143769|emb|CBI22630.3| unnamed
           protein product [Vitis vinifera]
          Length = 295

 Score =  374 bits (961), Expect = e-101
 Identities = 193/295 (65%), Positives = 229/295 (77%), Gaps = 6/295 (2%)
 Frame = -3

Query: 871 MLTLKYSSVFLSTKLDSVNISCKPRSFIVCAAKGPRPRYPRVWKSRTKIGTISKSKKLVD 692
           ML L+YS   ++ +LD+V I   PRS +VC AKGPRPRYPRVWK+R +IGTISKS KLVD
Sbjct: 1   MLCLRYSPATITRRLDAVEIPKNPRSIVVCGAKGPRPRYPRVWKTRQRIGTISKSAKLVD 60

Query: 691 CIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKGQG 512
           CIKGLSNVKEEVYGALD+FIAWELEFPLITV             KRIIQVTKWMLSKGQG
Sbjct: 61  CIKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLEDQKEWKRIIQVTKWMLSKGQG 120

Query: 511 RTKGSYFMLLNALAEDGRLEEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDKMFE 332
           RT GSYF LLNALAEDGRL+EAEELW ++FSENLESLPR+F++KMISIYY R MH+KMFE
Sbjct: 121 RTMGSYFTLLNALAEDGRLDEAEELWTKLFSENLESLPRVFYDKMISIYYRRDMHEKMFE 180

Query: 331 VFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKVLAK 152
           +FADMEELG+RPN +IV MVGDVFQKL MLDKYEKL++KYPP KWEYRY KGKRV++ AK
Sbjct: 181 IFADMEELGIRPNTSIVKMVGDVFQKLGMLDKYEKLQKKYPPPKWEYRYIKGKRVRIRAK 240

Query: 151 QVSLLEEATHKNGYIEEAKDNLSEPDEVVN------TDVDAVNDEANNHVNEFDE 5
                   T ++    EA+ +  +P E VN       + + ++DEA++ V++ DE
Sbjct: 241 -------LTGESDDPGEAESD--DPGEAVNEINDKTENSNEMHDEADSSVDDADE 286


>ref|XP_004140747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21190-like [Cucumis sativus]
          Length = 331

 Score =  367 bits (943), Expect = 2e-99
 Identities = 187/286 (65%), Positives = 221/286 (77%), Gaps = 5/286 (1%)
 Frame = -3

Query: 877 YRMLTLKYSSVFLSTKLDSVNISCKPRSFIVCAAKGPRPRYPRVWKSRTKIGTISKSKKL 698
           YRMLTL Y+    S +++SVN S  P S +VCAAKGPRPRYPRVWK++ +IGTISK+ KL
Sbjct: 17  YRMLTLVYTFPVTSKRIESVNFSWCPSSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKL 76

Query: 697 VDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSKG 518
           VDC+KGLSNVKEEVYGALD+FIAWELEFPLITV             KRIIQ+TKWMLSKG
Sbjct: 77  VDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKG 136

Query: 517 QGRTKGSYFMLLNALAEDGRLEEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDKM 338
           QGRT GSYF LLNALAEDGRL+EAEELW ++FS++LES+PRIFF+KMIS+YY + MHDK+
Sbjct: 137 QGRTMGSYFTLLNALAEDGRLDEAEELWNKLFSQHLESIPRIFFHKMISLYYDQAMHDKL 196

Query: 337 FEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKVL 158
           FEVFADMEELGV+PN AIV+ VG+VFQ+L MLDKY+KL +KYPP KWEYRY KGKRVK+ 
Sbjct: 197 FEVFADMEELGVQPNMAIVTKVGNVFQELGMLDKYKKLMKKYPPPKWEYRYIKGKRVKIR 256

Query: 157 AKQVSLLEEATHKNGYIEEAK-----DNLSEPDEVVNTDVDAVNDE 35
           AK +S  E     NG  E AK      N  +  E+ + D    +DE
Sbjct: 257 AKYLS--ENGNSNNGLSEHAKMEHSSTNSIDEAEITSEDSSLEDDE 300


>ref|XP_002867860.1| EMB1417 [Arabidopsis lyrata subsp. lyrata]
           gi|297313696|gb|EFH44119.1| EMB1417 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 317

 Score =  336 bits (862), Expect = 5e-90
 Identities = 177/293 (60%), Positives = 212/293 (72%), Gaps = 3/293 (1%)
 Frame = -3

Query: 871 MLTLKYSSVFL--STKLDSVNI-SCKPRSFIVCAAKGPRPRYPRVWKSRTKIGTISKSKK 701
           ML+L+YS  +L   TK  S  + S +P + +VCAA+GPRPR PRVWK+R +IGTISK+ K
Sbjct: 1   MLSLRYSLPYLLLQTKESSTKLFSKRPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAK 60

Query: 700 LVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKWMLSK 521
           ++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V             K+IIQVTKWMLSK
Sbjct: 61  MIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSK 120

Query: 520 GQGRTKGSYFMLLNALAEDGRLEEAEELWGQVFSENLESLPRIFFNKMISIYYSRGMHDK 341
           GQGRT G+YF LLNALAED RL+EAEELW ++F E+LE  PR FFNKMISIYY R MH K
Sbjct: 121 GQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQK 180

Query: 340 MFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGKRVKV 161
           +FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYPP +WE+RY KG+RVKV
Sbjct: 181 LFEVFADMEELGVKPNIAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKV 240

Query: 160 LAKQVSLLEEATHKNGYIEEAKDNLSEPDEVVNTDVDAVNDEANNHVNEFDEE 2
            AKQ++ L E        E+  D   E    + +D +   D  +    E DE+
Sbjct: 241 KAKQLNELSEGEGGLSSDEDKIDTEIESKSKILSDKEPKQDGEDLSEEEEDEK 293


>ref|NP_567622.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75246109|sp|Q8LG95.1|PP332_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g21190; AltName: Full=Protein EMBRYO DEFECTIVE 1417
           gi|21618230|gb|AAM67280.1| unknown [Arabidopsis
           thaliana] gi|51969238|dbj|BAD43311.1| putative protein
           [Arabidopsis thaliana] gi|51971351|dbj|BAD44340.1|
           putative protein [Arabidopsis thaliana]
           gi|51971365|dbj|BAD44347.1| putative protein
           [Arabidopsis thaliana] gi|332659017|gb|AEE84417.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 307

 Score =  336 bits (861), Expect = 6e-90
 Identities = 176/286 (61%), Positives = 209/286 (73%), Gaps = 7/286 (2%)
 Frame = -3

Query: 871 MLTLKYSSVFL-------STKLDSVNISCKPRSFIVCAAKGPRPRYPRVWKSRTKIGTIS 713
           ML+L+YS  +L       STKL     + KP + +VCAA+GPRPR PRVWK+R +IGTIS
Sbjct: 1   MLSLRYSLPYLLLQTRESSTKL----FTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTIS 56

Query: 712 KSKKLVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKW 533
           K+ K++ CIKGLSNVKEEVYGALD+FIAWELEFPL+ V             K+IIQVTKW
Sbjct: 57  KAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKW 116

Query: 532 MLSKGQGRTKGSYFMLLNALAEDGRLEEAEELWGQVFSENLESLPRIFFNKMISIYYSRG 353
           MLSKGQGRT G+YF LLNALAED RL+EAEELW ++F E+LE  PR FFNKMISIYY R 
Sbjct: 117 MLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRD 176

Query: 352 MHDKMFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGK 173
           MH K+FEVFADMEELGV+PN AIVSMVG VF KLEM DKYEKL +KYPP +WE+RY KG+
Sbjct: 177 MHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGR 236

Query: 172 RVKVLAKQVSLLEEATHKNGYIEEAKDNLSEPDEVVNTDVDAVNDE 35
           RVKV AKQ++ L E        E+  DN  E +E    D+    ++
Sbjct: 237 RVKVKAKQLNELSEGEGGLSSDEDKIDNEIESEEEDGEDLSEEEED 282


>ref|XP_002513638.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547546|gb|EEF49041.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 359

 Score =  333 bits (853), Expect = 5e-89
 Identities = 178/300 (59%), Positives = 218/300 (72%), Gaps = 3/300 (1%)
 Frame = -3

Query: 892 RVQPFYRMLTLKYSSVFLSTKLDSVNISCKPRSFIVCAAKGPRPRYPRVWKSRTKIGTIS 713
           ++  + +ML L+     +ST+ + +  S K  S +V A KG RPR PRVWK++ +IGTIS
Sbjct: 28  KILSWRQMLCLRPPLPLISTRFEVIKFS-KSTSSVVSALKGARPRAPRVWKTKPRIGTIS 86

Query: 712 KSKKLVDCIKGLSNVKEEVYGALDAFIAWELEFPLITVXXXXXXXXXXXXXKRIIQVTKW 533
           KS KLV+CIKGLSNVKEEVYGALD+ IAWELEFPLI V             KRIIQV KW
Sbjct: 87  KSAKLVECIKGLSNVKEEVYGALDSLIAWELEFPLIAVKKALKTLENEQEWKRIIQVIKW 146

Query: 532 MLSKGQGRTKGSYFMLLNALAEDGRLEEAEELWGQVFSENLESLPRIFFNKMISIYYSRG 353
           MLSKGQGRT G+YF LLNALAED RL+EAEELW ++FS+NLE  PR FF+KMISIYY R 
Sbjct: 147 MLSKGQGRTMGTYFTLLNALAEDERLDEAEELWTKLFSDNLEGTPRNFFDKMISIYYKRE 206

Query: 352 MHDKMFEVFADMEELGVRPNDAIVSMVGDVFQKLEMLDKYEKLKQKYPPSKWEYRYFKGK 173
           MH+KMFE+FADMEELGVRP+ +IV+M+G VFQKL MLDKY KLK+KYPP KWEYRY KGK
Sbjct: 207 MHEKMFEIFADMEELGVRPSVSIVNMMGSVFQKLGMLDKYRKLKKKYPPPKWEYRYIKGK 266

Query: 172 RVKVLAKQVSLL---EEATHKNGYIEEAKDNLSEPDEVVNTDVDAVNDEANNHVNEFDEE 2
           RV++ AKQV+      E+ ++N       + L+E D   NT ++  N E +  +NE DEE
Sbjct: 267 RVRLRAKQVNEFLGANESVNQNAETPYISNKLNEED---NTKLNEANVEED--LNELDEE 321