BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00043136
         (317 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   7e-16
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    56   2e-14
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou...    51   2e-13
gb|AAM08546.1|AC079935_18 Putative retroelement [Oryza sativa Ja...    49   8e-13
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    52   1e-12

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 60.1 bits (144), Expect(2) = 7e-16
 Identities = 25/56 (44%), Positives = 41/56 (73%)
 Frame = +2

Query: 149 QAIRLALELVNELNTPRYGGGIAIKLDISQAFDTMDCHFLWAVLHQVGFSDRWIEW 316
           + + LA E +N L   +YGG +A+K+DI++AFDT+D +FL AVL + GF ++++ W
Sbjct: 562 KCVILASEAINLLEKRQYGGNVALKVDIAKAFDTLDWNFLLAVLQRFGFDEKFVHW 617



 Score = 48.5 bits (114), Expect(2) = 7e-16
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = +3

Query: 18  YRPICLSNFVFKVITKILALRLSHIVERIGSKEQYGFIPHR 140
           YRPI L+NF FK+I+KILA RL+ I  RI S EQ GFI  R
Sbjct: 518 YRPIALANFQFKIISKILADRLADITMRIISVEQRGFIRDR 558


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 56.2 bits (134), Expect(2) = 2e-14
 Identities = 26/60 (43%), Positives = 39/60 (65%)
 Frame = +2

Query: 137 QNSQQAIRLALELVNELNTPRYGGGIAIKLDISQAFDTMDCHFLWAVLHQVGFSDRWIEW 316
           +N +  + LA E +N L+   +GG +A K+DIS+AFDT++  FL  VL Q GFS+ +  W
Sbjct: 232 RNIKDCVCLASEAINMLDQKSFGGNLAFKVDISKAFDTLNWKFLLKVLKQFGFSETFCNW 291



 Score = 47.4 bits (111), Expect(2) = 2e-14
 Identities = 23/42 (54%), Positives = 32/42 (76%)
 Frame = +3

Query: 15  KYRPICLSNFVFKVITKILALRLSHIVERIGSKEQYGFIPHR 140
           ++RPI ++NF FK+I+KILA RL+ I+  I S+EQ GFI  R
Sbjct: 191 QFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGR 232


>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
           gi|31430304|gb|AAP52238.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 764

 Score = 50.8 bits (120), Expect(2) = 2e-13
 Identities = 24/62 (38%), Positives = 38/62 (61%)
 Frame = +2

Query: 131 PTQNSQQAIRLALELVNELNTPRYGGGIAIKLDISQAFDTMDCHFLWAVLHQVGFSDRWI 310
           P + +   + +  E+++EL   +  G I  KLD  +A+D +   FL+ VLH+ GFSDRWI
Sbjct: 89  PGRQNLDGVVILHEVLHELKKEKKSG-IIFKLDFEKAYDKVQWSFLFDVLHKKGFSDRWI 147

Query: 311 EW 316
           +W
Sbjct: 148 QW 149



 Score = 49.7 bits (117), Expect(2) = 2e-13
 Identities = 23/46 (50%), Positives = 30/46 (65%)
 Frame = +3

Query: 3   NQIRKYRPICLSNFVFKVITKILALRLSHIVERIGSKEQYGFIPHR 140
           N I+ +RPICL N  FK +TKIL  RLS I +++  + Q  FIP R
Sbjct: 46  NTIKSFRPICLLNVCFKFLTKILTRRLSEIAQKVIGESQTAFIPGR 91


>gb|AAM08546.1|AC079935_18 Putative retroelement [Oryza sativa Japonica Group]
           gi|31431697|gb|AAP53436.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 586

 Score = 49.3 bits (116), Expect(2) = 8e-13
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = +2

Query: 149 QAIRLALELVNELNTPRYGGGIAIKLDISQAFDTMDCHFLWAVLHQVGFSDRWIEW 316
           + I +  EL+N L+T +   GI  K+D  +A+D +D  F++ +LH  GF D+W +W
Sbjct: 139 EGIVILHELLNSLHTKK-SSGILFKVDFEKAYDMVDWGFIYRILHSKGFPDQWCDW 193



 Score = 48.9 bits (115), Expect(2) = 8e-13
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +3

Query: 6   QIRKYRPICLSNFVFKVITKILALRLSHIVERIGSKEQYGFIPHR 140
           QI+K+RPICL N  FK+ITK+L  RL  I+  I SK Q  F+ +R
Sbjct: 91  QIQKFRPICLLNVSFKIITKVLMNRLDRIMTYIISKNQTAFLKNR 135


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 52.0 bits (123), Expect(2) = 1e-12
 Identities = 22/60 (36%), Positives = 38/60 (63%)
 Frame = +2

Query: 137 QNSQQAIRLALELVNELNTPRYGGGIAIKLDISQAFDTMDCHFLWAVLHQVGFSDRWIEW 316
           +N +  I L  E +N L+   +GG +A+K+D+++AFDT++  FL  VL   GF++ +  W
Sbjct: 293 RNIRDCIALTSEAINVLDNKSFGGNLALKIDVTKAFDTLNWDFLLLVLKTFGFNELFCNW 352



 Score = 45.4 bits (106), Expect(2) = 1e-12
 Identities = 23/46 (50%), Positives = 31/46 (67%)
 Frame = +3

Query: 3   NQIRKYRPICLSNFVFKVITKILALRLSHIVERIGSKEQYGFIPHR 140
           + + +YR I L NF FK+I K+LA RL+ I+  I SKEQ GF+  R
Sbjct: 248 DSVDQYRTIALVNFKFKIINKVLADRLAKILPSIISKEQRGFVQGR 293