BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00043112
         (274 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containi...   143   1e-32
ref|XP_003625900.1| Pentatricopeptide repeat-containing protein ...   137   9e-31
ref|XP_002531869.1| pentatricopeptide repeat-containing protein,...   132   3e-29
ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|2...   131   5e-29
ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containi...   125   4e-27

>ref|XP_002266871.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 468

 Score =  143 bits (361), Expect = 1e-32
 Identities = 66/91 (72%), Positives = 78/91 (85%)
 Frame = -1

Query: 274 LFDEMPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAGSGA 95
           +FDEMP RDVVSWT+LI G R+  +YDDAL AFE+MQ+ GV+PN VTMV ALSACA  GA
Sbjct: 166 VFDEMPHRDVVSWTVLITGYRSAERYDDALIAFEQMQYAGVVPNHVTMVNALSACADFGA 225

Query: 94  LEMGVWIHDYVKRNEWEVDVILGTSLIDMYG 2
           LEMGVWIH++++R+ WE DVILGTSLIDMYG
Sbjct: 226 LEMGVWIHEFIRRSGWEFDVILGTSLIDMYG 256


>ref|XP_003625900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355500915|gb|AES82118.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 467

 Score =  137 bits (345), Expect = 9e-31
 Identities = 66/90 (73%), Positives = 77/90 (85%)
 Frame = -1

Query: 274 LFDEMPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAGSGA 95
           LFDEMP+RDVVSWT++I G RN  KY+DAL  FE+MQ+ GV+PNRVTMV ALSACA S A
Sbjct: 166 LFDEMPQRDVVSWTVMIMGYRNGGKYNDALLVFEQMQYGGVVPNRVTMVNALSACASSCA 225

Query: 94  LEMGVWIHDYVKRNEWEVDVILGTSLIDMY 5
           +EMGVWI D V+RN WE+DVILGT+LIDMY
Sbjct: 226 IEMGVWIDDMVRRNGWELDVILGTALIDMY 255


>ref|XP_002531869.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528477|gb|EEF30506.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 242

 Score =  132 bits (332), Expect = 3e-29
 Identities = 59/86 (68%), Positives = 71/86 (82%)
 Frame = -1

Query: 262 MPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAGSGALEMG 83
           MPERDVVSWT+LI G RN   Y DAL AFE+MQ+ G++PN VTMV  L ACA  GA+EMG
Sbjct: 1   MPERDVVSWTVLIMGYRNAENYGDALIAFEQMQYAGIVPNHVTMVNVLGACARFGAIEMG 60

Query: 82  VWIHDYVKRNEWEVDVILGTSLIDMY 5
           +WIHD+++R+ WE+DVILGTSLIDMY
Sbjct: 61  IWIHDFIRRSGWEIDVILGTSLIDMY 86


>ref|XP_002320353.1| predicted protein [Populus trichocarpa] gi|222861126|gb|EEE98668.1|
           predicted protein [Populus trichocarpa]
          Length = 310

 Score =  131 bits (330), Expect = 5e-29
 Identities = 59/90 (65%), Positives = 73/90 (81%)
 Frame = -1

Query: 274 LFDEMPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAGSGA 95
           +FDEM +RDVVSWT+LI G RN + Y DAL AFE+MQ+ GV+PN VTMV AL AC    A
Sbjct: 67  VFDEMSDRDVVSWTVLIMGYRNAKNYADALIAFEKMQYAGVVPNHVTMVNALGACGSFRA 126

Query: 94  LEMGVWIHDYVKRNEWEVDVILGTSLIDMY 5
           +EMGVWIHD++ RN W++DVILGTSL++MY
Sbjct: 127 IEMGVWIHDFISRNGWDLDVILGTSLVEMY 156


>ref|XP_004160564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g56310-like [Cucumis sativus]
          Length = 464

 Score =  125 bits (314), Expect = 4e-27
 Identities = 61/91 (67%), Positives = 71/91 (78%)
 Frame = -1

Query: 274 LFDEMPERDVVSWTILIEGNRNLRKYDDALFAFERMQFLGVLPNRVTMVIALSACAGSGA 95
           +FDEM   DVVSWTILI G R     DDAL  FE+MQ+ GV PNRVT+V AL+ACA  GA
Sbjct: 167 VFDEMLHTDVVSWTILIMGYRVSFMLDDALIVFEQMQYAGVDPNRVTIVNALAACASFGA 226

Query: 94  LEMGVWIHDYVKRNEWEVDVILGTSLIDMYG 2
           +EMGVWIH++VK   WEVDV+LGT+LIDMYG
Sbjct: 227 IEMGVWIHEFVKTKRWEVDVVLGTALIDMYG 257