BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00043111
         (280 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    87   2e-15
gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thali...    86   4e-15
pir||S65820 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N4)...    86   4e-15
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...    85   5e-15
gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thali...    85   7e-15

>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 41/82 (50%), Positives = 58/82 (70%)
 Frame = +1

Query: 4    NQTFISLIPKIDNPCYTSQ*RSISLCNASYKIISKLLANRLRRLLPKFISPNQGAFASNR 183
            N + I+LIPK+ NP   ++ R ISLCN  YK++SK+LANRL+ +LP+ I+ NQ AF S R
Sbjct: 773  NHSLIALIPKVQNPKKVTEYRPISLCNVVYKLVSKVLANRLKSVLPEVIAENQSAFMSQR 832

Query: 184  AIGDNIGVVHEVIHKIKKSGEE 249
             I DNI    E+IH +K+ G++
Sbjct: 833  IIHDNIIAAFEIIHCLKRRGKD 854


>gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 195

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 42/93 (45%), Positives = 59/93 (63%)
 Frame = +1

Query: 1   LNQTFISLIPKIDNPCYTSQ*RSISLCNASYKIISKLLANRLRRLLPKFISPNQGAFASN 180
           +N+TF+ LIPKI  P   +  + I+LCN  +KIISK+L  RL+ LL K +S NQ AF + 
Sbjct: 36  VNETFVRLIPKIQAPKKVTDYKPIALCNVYFKIISKILTQRLKPLLHKLVSDNQSAFLAG 95

Query: 181 RAIGDNIGVVHEVIHKIKKSGEEQTGSFCFEDG 279
           RAI DN+ + HE +H +K SG  +  S   + G
Sbjct: 96  RAIADNVLITHETLHFLKTSGAIKNCSMAVKTG 128


>pir||S65820 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N4) - Arabidopsis
           thaliana retrotransposon Ta21 (fragment)
          Length = 180

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 42/93 (45%), Positives = 59/93 (63%)
 Frame = +1

Query: 1   LNQTFISLIPKIDNPCYTSQ*RSISLCNASYKIISKLLANRLRRLLPKFISPNQGAFASN 180
           +N+TF+ LIPKI  P   +  + I+LCN  +KIISK+L  RL+ LL K +S NQ AF + 
Sbjct: 30  VNETFVRLIPKIQAPKKVTDYKPIALCNVYFKIISKILTQRLKPLLHKLVSDNQSAFLAG 89

Query: 181 RAIGDNIGVVHEVIHKIKKSGEEQTGSFCFEDG 279
           RAI DN+ + HE +H +K SG  +  S   + G
Sbjct: 90  RAIADNVLITHETLHFLKTSGAIKNCSMAVKTG 122


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 39/88 (44%), Positives = 60/88 (68%)
 Frame = +1

Query: 1    LNQTFISLIPKIDNPCYTSQ*RSISLCNASYKIISKLLANRLRRLLPKFISPNQGAFASN 180
            +N+T ++LIPK+  P + S  R I+LCN SYKI++K++A+RL+  + + IS NQ AF SN
Sbjct: 1093 MNRTHLALIPKVKAPTHPSHYRPIALCNFSYKILTKIIASRLQPFMSELISDNQSAFVSN 1152

Query: 181  RAIGDNIGVVHEVIHKIKKSGEEQTGSF 264
            R I DN+ + HE+ H +K +     G+F
Sbjct: 1153 RQIQDNVIIAHEIYHHLKLTRSCNNGAF 1180


>gb|AAB48346.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 45/86 (52%), Positives = 57/86 (66%)
 Frame = +1

Query: 1   LNQTFISLIPKIDNPCYTSQ*RSISLCNASYKIISKLLANRLRRLLPKFISPNQGAFASN 180
           +NQT I LIPKI +P + S  R ISLC ASYKIISK+L  RL++ L   IS +Q AF   
Sbjct: 40  INQTQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPG 99

Query: 181 RAIGDNIGVVHEVIHKIKKSGEEQTG 258
           R I DN+ V HE++H +K   E Q+G
Sbjct: 100 RNISDNVLVAHELLHSLKSRRECQSG 125