BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00043076
         (295 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|2...   103   1e-20
ref|XP_002525134.1| pentatricopeptide repeat-containing protein,...   103   2e-20
ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containi...   100   1e-19
emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]    98   8e-19
ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containi...    77   1e-12

>ref|XP_002326026.1| predicted protein [Populus trichocarpa] gi|222862901|gb|EEF00408.1|
           predicted protein [Populus trichocarpa]
          Length = 737

 Score =  103 bits (258), Expect = 1e-20
 Identities = 53/92 (57%), Positives = 70/92 (76%)
 Frame = -1

Query: 295 SLVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVEYL 116
           +L+GLFGR G LD A  +F++MP ++LVTWNS+IS  GHHGFVE+ V++F +L+R+   L
Sbjct: 153 ALLGLFGRCGWLDEAFHVFEDMPDKSLVTWNSMISLLGHHGFVEDCVVLFRKLVRKEGSL 212

Query: 115 SERSFEGVLSGFKGLAYLEVGKQIHGLVLKTG 20
           S+ SFEGVLSG      LE G QIHGLV+K+G
Sbjct: 213 SKCSFEGVLSGLVCEEDLEFGGQIHGLVIKSG 244



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
 Frame = -1

Query: 292 LVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVEYLS 113
           L+ ++G+ GNL+ + K+F  M  RNL+TW ++IS+ G +G  +E++    E   ++E+L 
Sbjct: 586 LIDMYGKCGNLESSAKIFDSMTERNLITWTALISALGINGCAQEAL----ERFNDMEFLG 641

Query: 112 ER----SFEGVLSGFKGLAYLEVGKQIHG 38
            R    +F  VL+  +  A +  G Q+ G
Sbjct: 642 SRPDKVAFIAVLTACRHGALVREGMQLFG 670


>ref|XP_002525134.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535593|gb|EEF37261.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 792

 Score =  103 bits (256), Expect = 2e-20
 Identities = 52/99 (52%), Positives = 72/99 (72%), Gaps = 1/99 (1%)
 Frame = -1

Query: 295 SLVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVE-Y 119
           +L+ +FGR+G L+ A+ +F+++P ++LVTWNS+I  FG HG+VE+ +I FCEL RE+   
Sbjct: 153 ALLNVFGRWGWLNEALHVFEDLPIKSLVTWNSIICLFGQHGYVEDCIIYFCELHREIGCC 212

Query: 118 LSERSFEGVLSGFKGLAYLEVGKQIHGLVLKTGSEFYTS 2
           LSE SF GVLSG     YLE G+QIH LV KTG ++  S
Sbjct: 213 LSECSFVGVLSGLVCGKYLEFGEQIHSLVTKTGFDYTVS 251


>ref|XP_002276142.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g58590-like [Vitis vinifera]
          Length = 921

 Score =  100 bits (249), Expect = 1e-19
 Identities = 51/92 (55%), Positives = 67/92 (72%)
 Frame = -1

Query: 295 SLVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVEYL 116
           +L+ LFGR G +D  V  F+EMP +NLVTWN+VIS FG++GF EES+ +F EL+R    L
Sbjct: 193 ALLSLFGRNGCIDEVVCAFEEMPQKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGL 252

Query: 115 SERSFEGVLSGFKGLAYLEVGKQIHGLVLKTG 20
           SE SF GVLSGF     LE+G+Q+H L++K G
Sbjct: 253 SECSFMGVLSGFASEQDLELGEQVHDLLIKNG 284


>emb|CAN82291.1| hypothetical protein VITISV_021279 [Vitis vinifera]
          Length = 954

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 51/98 (52%), Positives = 68/98 (69%)
 Frame = -1

Query: 295 SLVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVEYL 116
           +L+ LF R G +D  V  F+EMP +NLVTWN+VIS FG++GF EES+ +F EL+R    L
Sbjct: 193 ALLSLFRRNGCIDEVVCAFEEMPLKNLVTWNTVISLFGNYGFSEESMFLFRELMRTGAGL 252

Query: 115 SERSFEGVLSGFKGLAYLEVGKQIHGLVLKTGSEFYTS 2
           SE SF GVLSGF     LE+G+Q+H L++K G +   S
Sbjct: 253 SECSFMGVLSGFASEQDLELGEQVHDLLIKNGFDXEVS 290


>ref|XP_003526239.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g58590-like [Glycine max]
          Length = 732

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
 Frame = -1

Query: 295 SLVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCELLREVEYL 116
           +L+GLFGR G  D     F++MP ++LVTWNS++S    +GFVEE  I+F +L+     L
Sbjct: 153 ALLGLFGRLGCWDELFLAFEDMPQKSLVTWNSMVSLLARNGFVEECKILFRDLVGTGISL 212

Query: 115 SERSFEGVLSGF-KGLAYLEVGKQIHGLVLKTG 20
           SE S   VLSG       LE G+QIHGL++K G
Sbjct: 213 SEGSVVAVLSGLVDSEEDLEYGEQIHGLMVKCG 245



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 20/52 (38%), Positives = 40/52 (76%)
 Frame = -1

Query: 292 LVGLFGRYGNLDGAVKLFKEMPYRNLVTWNSVISSFGHHGFVEESVIMFCEL 137
           L+ ++G+ G++D +VK+F+E+ Y+N++TW ++I++ G +GF  E+V+ F  L
Sbjct: 587 LIDMYGKCGSIDSSVKVFEEIMYKNIITWTALITALGLNGFAHEAVMRFQNL 638