BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00043014
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containi...   185   3e-45
ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|2...   177   6e-43
ref|XP_003610734.1| Pentatricopeptide repeat-containing protein ...   177   6e-43
ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containi...   171   4e-41
ref|NP_193218.1| pentatricopeptide repeat-containing protein [Ar...   168   4e-40

>ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera] gi|297737070|emb|CBI26271.3| unnamed
           protein product [Vitis vinifera]
          Length = 727

 Score =  185 bits (470), Expect = 3e-45
 Identities = 87/112 (77%), Positives = 98/112 (87%)
 Frame = +2

Query: 2   RIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKMVGYAPNTSSVLVDLDEEEKKEVI 181
           R E N EIHEFL++D++HK  DEIYEKL EVVSKLK+VGY+PNT S+LVDL+EEEKKEV+
Sbjct: 597 RFELNNEIHEFLVADRSHKHADEIYEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVV 656

Query: 182 LWHSEKLALCYGLMNLGNDSCIHIVKNLRVCEDCHTFFKLVSKVFEREIVVR 337
           LWHSEKLALCYGLM  G  SCI I+KNLRVCEDCHTF KL SKV+EREIVVR
Sbjct: 657 LWHSEKLALCYGLMRDGTGSCIRIIKNLRVCEDCHTFIKLASKVYEREIVVR 708


>ref|XP_002315764.1| predicted protein [Populus trichocarpa] gi|222864804|gb|EEF01935.1|
           predicted protein [Populus trichocarpa]
          Length = 452

 Score =  177 bits (450), Expect = 6e-43
 Identities = 83/112 (74%), Positives = 96/112 (85%)
 Frame = +2

Query: 2   RIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKMVGYAPNTSSVLVDLDEEEKKEVI 181
           RIE N +++EF+M+DK HKQ D+IYEKLDEVV +LK+VGY PNT SVLVD++EE KKEV+
Sbjct: 322 RIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVV 381

Query: 182 LWHSEKLALCYGLMNLGNDSCIHIVKNLRVCEDCHTFFKLVSKVFEREIVVR 337
           LWHSEKLALCYGLM  G  SCI IVKNLRVCEDCHTF KLVSKV+  EI+VR
Sbjct: 382 LWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVR 433


>ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355512069|gb|AES93692.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  177 bits (450), Expect = 6e-43
 Identities = 79/112 (70%), Positives = 101/112 (90%)
 Frame = +2

Query: 2   RIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKMVGYAPNTSSVLVDLDEEEKKEVI 181
           RIE N ++H F+M+D+ HKQ+DEIYEKLDEVVSKLK+VGY P+TS +L+DL+EE+KKE++
Sbjct: 596 RIEINNQVHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELV 655

Query: 182 LWHSEKLALCYGLMNLGNDSCIHIVKNLRVCEDCHTFFKLVSKVFEREIVVR 337
           LWHSEKLA+CYGL++  N+SCI IVKNLR+CEDCH+F KLVSKV++ EIVVR
Sbjct: 656 LWHSEKLAVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVR 707


>ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  171 bits (434), Expect = 4e-41
 Identities = 79/112 (70%), Positives = 96/112 (85%)
 Frame = +2

Query: 2   RIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKMVGYAPNTSSVLVDLDEEEKKEVI 181
           RIE N E+H F+M+D+ HKQ+DEIY+KLD VVS+LK+VGY P+TS +LVDL+EEEKKEV+
Sbjct: 591 RIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVV 650

Query: 182 LWHSEKLALCYGLMNLGNDSCIHIVKNLRVCEDCHTFFKLVSKVFEREIVVR 337
           LWHSEKLALCYGL+    +SCI IVKNLR+CEDCH+F KLVSKV   EIV+R
Sbjct: 651 LWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMR 702


>ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274931|sp|O23337.1|PP311_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14820 gi|2244839|emb|CAB10261.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|7268228|emb|CAB78524.1| hypothetical protein
           [Arabidopsis thaliana] gi|332658106|gb|AEE83506.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 722

 Score =  168 bits (426), Expect = 4e-40
 Identities = 83/118 (70%), Positives = 98/118 (83%), Gaps = 6/118 (5%)
 Frame = +2

Query: 2   RIEANGEIHEFLMSDKTHKQTDEIYEKLDEVVSKLKMVGYAPNTSSVLVDLDEEEKKEVI 181
           RI+ NG+ HEFL+ DK HKQ++EIY KLDEVVSKLK+ GY P+  SVLVD++EEEKK+++
Sbjct: 586 RIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLV 645

Query: 182 LWHSEKLALCYGLMN----LGNDSC--IHIVKNLRVCEDCHTFFKLVSKVFEREIVVR 337
           LWHSEKLALC+GLMN       DSC  I IVKNLRVCEDCH FFKLVSKV+EREI+VR
Sbjct: 646 LWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVR 703