BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042920
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...    70   2e-10
ref|XP_002871739.1| pentatricopeptide repeat-containing protein ...    68   9e-10
ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containi...    64   1e-08
ref|NP_197188.1| pentatricopeptide repeat-containing protein [Ar...    64   2e-08
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-08

>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/109 (35%), Positives = 63/109 (57%)
 Frame = +2

Query: 17  TSTSRKLITTIDFSPIIKKLNQCKFLFDIRDIHQQLLLKQDYLTENIAIQIIKTYVNFHA 196
           TS S  L +T   SP +  L QCK +F    IHQQ +++   L  + ++ +I TY+  +A
Sbjct: 31  TSGSIALTSTPVISPTL--LKQCKSIFQSHLIHQQAIVQG--LLSHFSLNLISTYLALNA 86

Query: 197 YIYSVDLLKTIPPSSNAVYWWNQIIKADVSNGYQDNAFNLYCLMLSLNW 343
             +++ LL+ + PS +AVYWWN +I+  V  G   ++ +L+  M  LNW
Sbjct: 87  PSHALSLLQCLTPSPSAVYWWNALIRRAVRLGLLQHSLSLFRTMRRLNW 135


>ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297317576|gb|EFH47998.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 850

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/90 (35%), Positives = 54/90 (60%)
 Frame = +2

Query: 74  LNQCKFLFDIRDIHQQLLLKQDYLTENIAIQIIKTYVNFHAYIYSVDLLKTIPPSSNAVY 253
           +++CK +  ++ IHQ+LL     LT N+   +I TY++     ++V LL+  PPS   VY
Sbjct: 35  IHKCKTISQVKLIHQKLL-SFGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVY 93

Query: 254 WWNQIIKADVSNGYQDNAFNLYCLMLSLNW 343
            WN +I++  +NG  +   + +CLM SL+W
Sbjct: 94  HWNSLIRSYGNNGRANKCLSSFCLMHSLSW 123


>ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 32/93 (34%), Positives = 55/93 (59%)
 Frame = +2

Query: 65  IKKLNQCKFLFDIRDIHQQLLLKQDYLTENIAIQIIKTYVNFHAYIYSVDLLKTIPPSSN 244
           I  L +C  L   + +HQQ +++   L  ++A  +I TY+  ++  Y++ LL+ +PPS +
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQG--LLFHLATNLIGTYIASNSTAYAILLLERLPPSPS 222

Query: 245 AVYWWNQIIKADVSNGYQDNAFNLYCLMLSLNW 343
           +V+WWNQ+I+  +  G   + F LY  M SL W
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGW 255


>ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g16860 gi|9755687|emb|CAC01699.1| putative protein
           [Arabidopsis thaliana] gi|332004967|gb|AED92350.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 850

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 32/90 (35%), Positives = 52/90 (57%)
 Frame = +2

Query: 74  LNQCKFLFDIRDIHQQLLLKQDYLTENIAIQIIKTYVNFHAYIYSVDLLKTIPPSSNAVY 253
           +++CK +  ++ IHQ+LL     LT N+   +I TY++     ++V LL+  PPS   VY
Sbjct: 35  IHKCKTISQVKLIHQKLL-SFGILTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVY 93

Query: 254 WWNQIIKADVSNGYQDNAFNLYCLMLSLNW 343
            WN +I++   NG  +    L+ LM SL+W
Sbjct: 94  HWNSLIRSYGDNGCANKCLYLFGLMHSLSW 123


>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
           gi|449479088|ref|XP_004155501.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 10/116 (8%)
 Frame = +2

Query: 26  SRKLITTIDFS----------PIIKKLNQCKFLFDIRDIHQQLLLKQDYLTENIAIQIIK 175
           SR LIT++ F           P+I  L QCK L + +  HQQ+ +     TE  +  +  
Sbjct: 11  SRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHG--FTEMFSYAV-G 67

Query: 176 TYVNFHAYIYSVDLLKTIPPSSNAVYWWNQIIKADVSNGYQDNAFNLYCLMLSLNW 343
            Y+   A   +V LL+ + PS + V+WWN +I+  V  G  D+    YC M  L W
Sbjct: 68  AYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGW 123