BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042805
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   128   5e-28
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...   124   1e-26
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...   116   2e-24
ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  128 bits (321), Expect = 5e-28
 Identities = 59/89 (66%), Positives = 71/89 (79%)
 Frame = -3

Query: 269 KTTQLHLNHLCRNGQLKEAVNALDTIAKQGNKLTPNAYISLLQHCIDSNSIEQGRKVHSR 90
           K T  HLNHLC+NG+L +A+  LD IA+ G+ + PN Y+ LLQ CID  S E GRK+H+R
Sbjct: 51  KVTDAHLNHLCKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHAR 110

Query: 89  ISLVDEMNPFVETKLVSMYAKCGSLGEAR 3
           I L++EMNPFVETKLVSMYAKCGSLGEAR
Sbjct: 111 IGLLEEMNPFVETKLVSMYAKCGSLGEAR 139


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score =  124 bits (310), Expect = 1e-26
 Identities = 58/92 (63%), Positives = 72/92 (78%)
 Frame = -3

Query: 278 FTSKTTQLHLNHLCRNGQLKEAVNALDTIAKQGNKLTPNAYISLLQHCIDSNSIEQGRKV 99
           FT K T  HLN+LC+ G+L EAV+AL+ IA+ G+K++P  +ISLLQ CID NS+  GRKV
Sbjct: 37  FTKKITDSHLNYLCKKGRLNEAVSALELIAQHGSKVSPKTFISLLQSCIDCNSVTLGRKV 96

Query: 98  HSRISLVDEMNPFVETKLVSMYAKCGSLGEAR 3
           H+   LV E NPF+ETKLVSMYAKCGSL +AR
Sbjct: 97  HAHFHLVQEKNPFLETKLVSMYAKCGSLSDAR 128


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/91 (61%), Positives = 72/91 (79%)
 Frame = -3

Query: 275 TSKTTQLHLNHLCRNGQLKEAVNALDTIAKQGNKLTPNAYISLLQHCIDSNSIEQGRKVH 96
           TSK    HL++LC NG L+EA+ A+D+I+K+G+KL+ N YI+LLQ CID  SIE GR++H
Sbjct: 44  TSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH 103

Query: 95  SRISLVDEMNPFVETKLVSMYAKCGSLGEAR 3
            R+ LV  +NPFVETKLVSMYAKCG L +AR
Sbjct: 104 VRMGLVHRVNPFVETKLVSMYAKCGCLKDAR 134


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score =  116 bits (291), Expect = 2e-24
 Identities = 56/91 (61%), Positives = 72/91 (79%)
 Frame = -3

Query: 275 TSKTTQLHLNHLCRNGQLKEAVNALDTIAKQGNKLTPNAYISLLQHCIDSNSIEQGRKVH 96
           TSK    HL++LC NG L+EA+ A+D+I+K+G+KL+ N YI+LLQ CID  SIE GR++H
Sbjct: 44  TSKFNDDHLSYLCSNGLLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELH 103

Query: 95  SRISLVDEMNPFVETKLVSMYAKCGSLGEAR 3
            R+ LV  +NPFVETKLVSMYAKCG L +AR
Sbjct: 104 VRMGLVHRVNPFVETKLVSMYAKCGCLKDAR 134


>ref|XP_003544296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Glycine max]
          Length = 945

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/89 (58%), Positives = 66/89 (74%)
 Frame = -3

Query: 269 KTTQLHLNHLCRNGQLKEAVNALDTIAKQGNKLTPNAYISLLQHCIDSNSIEQGRKVHSR 90
           K     LN LC NG L EAV  LD++A+QG+K+ P  +++LLQ CID + I  GR++H+R
Sbjct: 50  KLVDTQLNQLCANGSLSEAVAILDSLAQQGSKVRPITFMNLLQACIDKDCILVGRELHTR 109

Query: 89  ISLVDEMNPFVETKLVSMYAKCGSLGEAR 3
           I LV ++NPFVETKLVSMYAKCG L EAR
Sbjct: 110 IGLVRKVNPFVETKLVSMYAKCGHLDEAR 138