BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042788
         (249 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28135.3| unnamed protein product [Vitis vinifera]              132   2e-29
ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containi...   132   2e-29
gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]        128   4e-28
gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarab...   125   4e-27
ref|XP_002866111.1| pentatricopeptide repeat-containing protein ...   125   5e-27

>emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  132 bits (333), Expect = 2e-29
 Identities = 60/82 (73%), Positives = 72/82 (87%)
 Frame = +3

Query: 3    LKLIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSM 182
            L+LI  GK VHGY LK GF  CVFV+SSLVDMYGKCGVLEDA+++FD + ++NVVTWNSM
Sbjct: 1290 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 1349

Query: 183  VVGYVQNGMNEEAIRMFYDMRV 248
            +VGYVQNG+N+EAI +FYDMRV
Sbjct: 1350 IVGYVQNGLNQEAIDVFYDMRV 1371



 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 30/78 (38%), Positives = 56/78 (71%)
 Frame = +3

Query: 12   IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
            I+ GK  H Y +++  +  V VA+S++DMY KC  ++DA+++FD  ++R++V WN+++  
Sbjct: 1495 IKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAA 1554

Query: 192  YVQNGMNEEAIRMFYDMR 245
            Y Q G++ EA+++FY M+
Sbjct: 1555 YAQVGLSGEALKLFYQMQ 1572



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 27/72 (37%), Positives = 47/72 (65%)
 Frame = +3

Query: 18   FGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVGYV 197
            +G+ +HG+  +  F   V VA+SLVDMY KCG +++AK++F  +S + +  +N+M+  Y 
Sbjct: 1668 YGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYA 1727

Query: 198  QNGMNEEAIRMF 233
             +G   EA+ +F
Sbjct: 1728 LHGQAVEALALF 1739



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = +3

Query: 9    LIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVV 188
            LIE GK  H  A+    D    + SS+++ Y K G++EDA+ +F  + +++VVTWN ++ 
Sbjct: 1394 LIE-GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLIS 1452

Query: 189  GYVQNGMNEEAIRMFYDMR 245
             YVQ+    +A+ M + MR
Sbjct: 1453 SYVQHHQVGKALNMCHLMR 1471


>ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  132 bits (333), Expect = 2e-29
 Identities = 60/82 (73%), Positives = 72/82 (87%)
 Frame = +3

Query: 3   LKLIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSM 182
           L+LI  GK VHGY LK GF  CVFV+SSLVDMYGKCGVLEDA+++FD + ++NVVTWNSM
Sbjct: 195 LQLIGLGKGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSM 254

Query: 183 VVGYVQNGMNEEAIRMFYDMRV 248
           +VGYVQNG+N+EAI +FYDMRV
Sbjct: 255 IVGYVQNGLNQEAIDVFYDMRV 276



 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 30/78 (38%), Positives = 56/78 (71%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           I+ GK  H Y +++  +  V VA+S++DMY KC  ++DA+++FD  ++R++V WN+++  
Sbjct: 400 IKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKVFDSTTERDLVLWNTLLAA 459

Query: 192 YVQNGMNEEAIRMFYDMR 245
           Y Q G++ EA+++FY M+
Sbjct: 460 YAQVGLSGEALKLFYQMQ 477



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 27/72 (37%), Positives = 47/72 (65%)
 Frame = +3

Query: 18  FGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVGYV 197
           +G+ +HG+  +  F   V VA+SLVDMY KCG +++AK++F  +S + +  +N+M+  Y 
Sbjct: 573 YGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKELPIYNAMISAYA 632

Query: 198 QNGMNEEAIRMF 233
            +G   EA+ +F
Sbjct: 633 LHGQAVEALALF 644



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 29/79 (36%), Positives = 48/79 (60%)
 Frame = +3

Query: 9   LIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVV 188
           LIE GK  H  A+    D    + SS+++ Y K G++EDA+ +F  + +++VVTWN ++ 
Sbjct: 299 LIE-GKQGHAIAILNSLDLDNILGSSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLIS 357

Query: 189 GYVQNGMNEEAIRMFYDMR 245
            YVQ+    +A+ M + MR
Sbjct: 358 SYVQHHQVGKALNMCHLMR 376


>gb|AEP33742.1| chlororespiratory reduction 21 [Barbarea verna]
          Length = 607

 Score =  128 bits (322), Expect = 4e-28
 Identities = 57/81 (70%), Positives = 70/81 (86%)
 Frame = +3

Query: 3   LKLIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSM 182
           L+   FG+ VHGY +K G D CVFVASSL DMYGKCGVL+DA+++FDEI +RNVV WN++
Sbjct: 180 LQWSRFGRGVHGYVVKSGXDDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL 239

Query: 183 VVGYVQNGMNEEAIRMFYDMR 245
           +VGYVQNGMNEEAIR+F+DMR
Sbjct: 240 MVGYVQNGMNEEAIRLFFDMR 260



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 27/79 (34%), Positives = 55/79 (69%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           ++ GK V  Y ++   +  + +AS+ +DMY KCG + DA++ FD I +++++ WN+++  
Sbjct: 385 LKLGKEVQCYCIRHSLESDIVLASTAIDMYAKCGSIVDARKAFDSIVEKDLILWNTLLAA 444

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           Y + G++ EA+R+FY+M++
Sbjct: 445 YAEPGLSGEALRLFYEMQL 463



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           IE GK  H  A+  G +    + +S+++ Y K G++E A+ IFD + +++VVTWN ++ G
Sbjct: 284 IEEGKQSHAIAIVHGLELDNILGTSILNFYCKVGLIEYAEMIFDRMIEKDVVTWNLLISG 343

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           YVQ G+ E+AI M   MR+
Sbjct: 344 YVQQGLVEDAIHMCQLMRL 362


>gb|AEP33735.1| chlororespiratory reduction 21, partial [Olimarabidopsis pumila]
          Length = 811

 Score =  125 bits (314), Expect = 4e-27
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = +3

Query: 3   LKLIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSM 182
           L+   FG+ VHGY +K G + CVFVASSL DMYGKCGVL+DA+++FDEI +RNVV WN++
Sbjct: 166 LQWSRFGRGVHGYVIKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL 225

Query: 183 VVGYVQNGMNEEAIRMFYDMR 245
           +VGYVQNGMNEEAIR+F DMR
Sbjct: 226 MVGYVQNGMNEEAIRLFSDMR 246



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 30/79 (37%), Positives = 57/79 (72%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           ++FGK V  Y ++   D  + +AS+ +DMY KCG + DAK++FD   +++++ WN+++  
Sbjct: 371 LKFGKEVQCYCIRHSLDTDIVLASTTMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAA 430

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           Y Q+G++ EA+R+FY+M++
Sbjct: 431 YAQSGLSGEALRLFYEMQL 449



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 32/79 (40%), Positives = 51/79 (64%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           +E GK  H  A+  G +    + +SL++ Y K G++E A+ +FD + D++VVTWN ++ G
Sbjct: 270 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMFDKDVVTWNLLISG 329

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           YVQ G+ E+AI M   MR+
Sbjct: 330 YVQQGLVEDAIYMSQLMRL 348


>ref|XP_002866111.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311946|gb|EFH42370.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 829

 Score =  125 bits (313), Expect = 5e-27
 Identities = 56/81 (69%), Positives = 69/81 (85%)
 Frame = +3

Query: 3   LKLIEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSM 182
           L+   FG+ VHGY +K G + CVFVASSL DMYGKCGVL+DA+++FDEI +RNVV WN++
Sbjct: 186 LQWSRFGRGVHGYVVKAGLEDCVFVASSLADMYGKCGVLDDARKVFDEIPERNVVAWNAL 245

Query: 183 VVGYVQNGMNEEAIRMFYDMR 245
           +VGYVQNGMNEEAIR+F DMR
Sbjct: 246 MVGYVQNGMNEEAIRLFSDMR 266



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 27/79 (34%), Positives = 57/79 (72%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           ++ GK V  Y ++  F+  + +AS+++DMY KCG + DAK++FD  ++++++ WN+++  
Sbjct: 391 LKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTAEKDLILWNTLLAA 450

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           Y ++G++ E +R+FY M++
Sbjct: 451 YAESGLSGEGLRLFYGMQL 469



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 32/79 (40%), Positives = 50/79 (63%)
 Frame = +3

Query: 12  IEFGKVVHGYALKKGFDCCVFVASSLVDMYGKCGVLEDAKRIFDEISDRNVVTWNSMVVG 191
           +E GK  H  A+  G +    + +SL++ Y K G++E A+ +FD + D++VVTWN ++ G
Sbjct: 290 VEEGKQSHAIAIVNGLELDNILGTSLLNFYCKVGLIEYAEMVFDRMIDKDVVTWNLIISG 349

Query: 192 YVQNGMNEEAIRMFYDMRV 248
           YVQ G+ E AI M   MR+
Sbjct: 350 YVQQGLVENAIYMCQLMRL 368