BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042712
         (394 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containi...   212   2e-53
emb|CBI36294.3| unnamed protein product [Vitis vinifera]              212   2e-53
ref|NP_175673.1| pentatricopeptide repeat-containing protein [Ar...   197   9e-49
ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containi...   197   9e-49
ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containi...   196   2e-48

>ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score =  212 bits (540), Expect = 2e-53
 Identities = 94/131 (71%), Positives = 113/131 (86%)
 Frame = +2

Query: 2   DDVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSY 181
           +D+HSA +VLDRMRRY+L PNVFTYNCI+K   K + VD+ Y LLDEMIERGV+PD+WSY
Sbjct: 303 NDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY 362

Query: 182 NAIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQ 361
           NAI+AFHCDHCEVN AL+LI+RME + CMPDRHTYNMVLK+L+RVGRF+R T+VW  ME+
Sbjct: 363 NAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEE 422

Query: 362 RGYYAPVSTYA 394
           RG+Y   STYA
Sbjct: 423 RGFYPAASTYA 433



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           D   A K+ + MR    A +V  YN +L+   K   VD+ Y L  EM   G+ PD  SY+
Sbjct: 234 DSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYS 293

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
                +C+  +++ A +++ RM     +P+  TYN ++K L +  + + A ++ + M +R
Sbjct: 294 IFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER 353

Query: 365 GYYAPVSTY 391
           G    + +Y
Sbjct: 354 GVSPDLWSY 362


>emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score =  212 bits (540), Expect = 2e-53
 Identities = 94/131 (71%), Positives = 113/131 (86%)
 Frame = +2

Query: 2   DDVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSY 181
           +D+HSA +VLDRMRRY+L PNVFTYNCI+K   K + VD+ Y LLDEMIERGV+PD+WSY
Sbjct: 276 NDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLWSY 335

Query: 182 NAIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQ 361
           NAI+AFHCDHCEVN AL+LI+RME + CMPDRHTYNMVLK+L+RVGRF+R T+VW  ME+
Sbjct: 336 NAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEE 395

Query: 362 RGYYAPVSTYA 394
           RG+Y   STYA
Sbjct: 396 RGFYPAASTYA 406



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           D   A K+ + MR    A +V  YN +L+   K   VD+ Y L  EM   G+ PD  SY+
Sbjct: 207 DSSEARKLFEEMRERGCAVDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYS 266

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
                +C+  +++ A +++ RM     +P+  TYN ++K L +  + + A ++ + M +R
Sbjct: 267 IFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIER 326

Query: 365 GYYAPVSTY 391
           G    + +Y
Sbjct: 327 GVSPDLWSY 335


>ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g52640, mitochondrial; Flags: Precursor
           gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535
           DUF domains [Arabidopsis thaliana]
           gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis
           thaliana] gi|62320530|dbj|BAD95108.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332194712|gb|AEE32833.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  197 bits (500), Expect = 9e-49
 Identities = 86/129 (66%), Positives = 107/129 (82%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           DVHSA KVLDRM+RYDL PNV+T+N I+K   K + VDD YLLLDEMI++G NPD W+YN
Sbjct: 293 DVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYN 352

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
           +I A+HCDHCEVN A KL++RM+   C+PDRHTYNMVLK+LIR+GRF+RATE+WE M +R
Sbjct: 353 SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSER 412

Query: 365 GYYAPVSTY 391
            +Y  V+TY
Sbjct: 413 KFYPTVATY 421



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 37/129 (28%), Positives = 63/129 (48%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           D   A KV D M   +   ++  YN +L    K   VD  Y +  EM   G+ PD +S+ 
Sbjct: 223 DASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFA 282

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
                +CD  +V+ A K++ RM+    +P+ +T+N ++K L +  + + A  + + M Q+
Sbjct: 283 IFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQK 342

Query: 365 GYYAPVSTY 391
           G      TY
Sbjct: 343 GANPDTWTY 351


>ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  197 bits (500), Expect = 9e-49
 Identities = 88/131 (67%), Positives = 108/131 (82%)
 Frame = +2

Query: 2   DDVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSY 181
           DDV SA +VLD+MRRY+L PNVFTYNCI+K   K + V++ Y LLDEMI RGV PD WSY
Sbjct: 300 DDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISRGVKPDTWSY 359

Query: 182 NAIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQ 361
           NAI+A+HCDHCEVN AL+L+ RME D C+PDRHTYNMVLK+LIR+GRF++ TEVWE+M  
Sbjct: 360 NAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDKVTEVWENMVD 419

Query: 362 RGYYAPVSTYA 394
           + +Y  VSTY+
Sbjct: 420 KKFYPSVSTYS 430



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/121 (23%), Positives = 56/121 (46%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           D   A  +   M       ++  YN +L+   K   VD+   +  +M+ + V PD ++Y+
Sbjct: 231 DSEKACDLFQAMLEQGCPVDLLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYS 290

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
                +CD  +V  A +++ +M     +P+  TYN ++K L +      A ++ + M  R
Sbjct: 291 IFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMISR 350

Query: 365 G 367
           G
Sbjct: 351 G 351


>ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Glycine max]
          Length = 523

 Score =  196 bits (497), Expect = 2e-48
 Identities = 85/131 (64%), Positives = 109/131 (83%)
 Frame = +2

Query: 2   DDVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSY 181
           DDV SA++VLD+MRRY++ PNVFTYNCI+K   K + V++ YLLLDEMI RGV PD WSY
Sbjct: 300 DDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISRGVRPDTWSY 359

Query: 182 NAIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQ 361
           NAI+A+HCDHCEVN A++L+ RME D C+PDRHTYNMVLK+LIR+GRF++ T+VW +M  
Sbjct: 360 NAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDKVTKVWGNMGD 419

Query: 362 RGYYAPVSTYA 394
           + +Y  VSTY+
Sbjct: 420 KKFYPSVSTYS 430



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/121 (24%), Positives = 57/121 (47%)
 Frame = +2

Query: 5   DVHSAVKVLDRMRRYDLAPNVFTYNCILKLFLKKQMVDDTYLLLDEMIERGVNPDIWSYN 184
           D   A ++   M       ++  YN +L+   K   VD+   +  +M+ + V PD ++Y+
Sbjct: 231 DSEKAHELFQAMLEQGCPVDLLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYS 290

Query: 185 AIEAFHCDHCEVNMALKLITRMESDGCMPDRHTYNMVLKVLIRVGRFNRATEVWESMEQR 364
                +CD  +V  AL+++ +M     +P+  TYN ++K L +      A  + + M  R
Sbjct: 291 IFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMISR 350

Query: 365 G 367
           G
Sbjct: 351 G 351