BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042481
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24229.3| unnamed protein product [Vitis vinifera]              130   1e-28
ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28
emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]   130   1e-28
ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containi...   117   1e-24
ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containi...   113   1e-23

>emb|CBI24229.3| unnamed protein product [Vitis vinifera]
          Length = 547

 Score =  130 bits (326), Expect = 1e-28
 Identities = 56/86 (65%), Positives = 74/86 (86%)
 Frame = -2

Query: 277 KDPDDPATYIVLSNLYASVGKWGDVRKTRLKMKELGLKKNPGCSWIEVDKRLNSFFVEDK 98
           KDPDDP+TYI+LSN+YASV KW +VRK RLK+KELGLKKNPGCSWIEV KR++ F VEDK
Sbjct: 461 KDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDK 520

Query: 97  SHPEVELIHECLANFIRHMDEEELLS 20
           SHP+ ++I+EC++    H+++ ++LS
Sbjct: 521 SHPQADMIYECMSILASHVEKYQVLS 546


>ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  130 bits (326), Expect = 1e-28
 Identities = 56/86 (65%), Positives = 74/86 (86%)
 Frame = -2

Query: 277 KDPDDPATYIVLSNLYASVGKWGDVRKTRLKMKELGLKKNPGCSWIEVDKRLNSFFVEDK 98
           KDPDDP+TYI+LSN+YASV KW +VRK RLK+KELGLKKNPGCSWIEV KR++ F VEDK
Sbjct: 608 KDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDK 667

Query: 97  SHPEVELIHECLANFIRHMDEEELLS 20
           SHP+ ++I+EC++    H+++ ++LS
Sbjct: 668 SHPQADMIYECMSILASHVEKYQVLS 693


>emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  130 bits (326), Expect = 1e-28
 Identities = 56/86 (65%), Positives = 74/86 (86%)
 Frame = -2

Query: 277  KDPDDPATYIVLSNLYASVGKWGDVRKTRLKMKELGLKKNPGCSWIEVDKRLNSFFVEDK 98
            KDPDDP+TYI+LSN+YASV KW +VRK RLK+KELGLKKNPGCSWIEV KR++ F VEDK
Sbjct: 800  KDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGCSWIEVGKRIHPFVVEDK 859

Query: 97   SHPEVELIHECLANFIRHMDEEELLS 20
            SHP+ ++I+EC++    H+++ ++LS
Sbjct: 860  SHPQADMIYECMSILASHVEKYQVLS 885


>ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
           gi|449481162|ref|XP_004156100.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  117 bits (293), Expect = 1e-24
 Identities = 52/83 (62%), Positives = 68/83 (81%)
 Frame = -2

Query: 274 DPDDPATYIVLSNLYASVGKWGDVRKTRLKMKELGLKKNPGCSWIEVDKRLNSFFVEDKS 95
           DPDDP+TYI+LSN+YASV KW +VRK R KMKELGLKK+PGCSWIE+++R++ FF EDKS
Sbjct: 609 DPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQRIHPFFAEDKS 668

Query: 94  HPEVELIHECLANFIRHMDEEEL 26
           +P  + ++ECL     HM++ EL
Sbjct: 669 NPLADGVYECLNILGCHMEKNEL 691


>ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  113 bits (283), Expect = 1e-23
 Identities = 50/82 (60%), Positives = 65/82 (79%)
 Frame = -2

Query: 277 KDPDDPATYIVLSNLYASVGKWGDVRKTRLKMKELGLKKNPGCSWIEVDKRLNSFFVEDK 98
           KDPDD +TYI+LSN+YAS  KW +VR  R KMKELGLKKNPGCSWIE+++++  FFVED 
Sbjct: 608 KDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWIEINQKILPFFVEDN 667

Query: 97  SHPEVELIHECLANFIRHMDEE 32
           SH  +EL+ +CL+    HM++E
Sbjct: 668 SHLHLELVFKCLSYLSDHMEDE 689