BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042398
         (297 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_671841.1| uncharacterized protein [Arabidopsis thaliana] ...    59   4e-15
gb|AFK44984.1| unknown [Medicago truncatula]                           52   4e-11
ref|XP_002886888.1| hypothetical protein ARALYDRAFT_475597 [Arab...    49   3e-09
ref|NP_042462.1| ORF54b [Pinus thunbergii] gi|1262702|dbj|BAA044...    52   2e-07
ref|XP_003618685.1| Photosystem I assembly protein ycf3 [Medicag...    58   9e-07

>ref|NP_671841.1| uncharacterized protein [Arabidopsis thaliana]
           gi|330251116|gb|AEC06210.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 72

 Score = 59.3 bits (142), Expect(2) = 4e-15
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +3

Query: 186 FLIGIGITKNGWDNKHPSRSYFGYPYNH 269
           F +GIG  +NGW+NKHPSRSYFGYPYNH
Sbjct: 45  FFVGIGTNQNGWNNKHPSRSYFGYPYNH 72



 Score = 46.6 bits (109), Expect(2) = 4e-15
 Identities = 19/21 (90%), Positives = 21/21 (100%)
 Frame = +1

Query: 103 TNRRHRGRSTTPRNQQHENFV 165
           TNRRHRGRSTTPRNQQH+NF+
Sbjct: 16  TNRRHRGRSTTPRNQQHKNFL 36


>gb|AFK44984.1| unknown [Medicago truncatula]
          Length = 63

 Score = 51.6 bits (122), Expect(2) = 4e-11
 Identities = 24/33 (72%), Positives = 29/33 (87%), Gaps = 1/33 (3%)
 Frame = -2

Query: 269 MVIRVSKVRTRWMFVVPTILGNPDPDKE-RVYF 174
           MVI VSK+RTRWMF+VPTIL +PDP K+ R+YF
Sbjct: 1   MVIWVSKIRTRWMFIVPTILVSPDPHKKGRIYF 33



 Score = 40.8 bits (94), Expect(2) = 4e-11
 Identities = 24/36 (66%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = -1

Query: 186 KGILYNNNKVF-VLLIPRCSASSPMPPISTSGVVLT 82
           KG +Y   + F VLLIP+ SASSPMPPI TSGV LT
Sbjct: 28  KGRIYFFLQSFLVLLIPKRSASSPMPPIGTSGVGLT 63


>ref|XP_002886888.1| hypothetical protein ARALYDRAFT_475597 [Arabidopsis lyrata subsp.
           lyrata] gi|297332729|gb|EFH63147.1| hypothetical protein
           ARALYDRAFT_475597 [Arabidopsis lyrata subsp. lyrata]
          Length = 60

 Score = 48.9 bits (115), Expect(2) = 3e-09
 Identities = 21/28 (75%), Positives = 27/28 (96%)
 Frame = -2

Query: 269 MVIRVSKVRTRWMFVVPTILGNPDPDKE 186
           MVIRVSKVRTRWMF+VPT+L +P+P++E
Sbjct: 1   MVIRVSKVRTRWMFIVPTMLISPNPNEE 28



 Score = 37.4 bits (85), Expect(2) = 3e-09
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = -1

Query: 186 KGILYNNNKVFVLLIPRCSASSPMPPI 106
           KGI++   KVFVLLI R SASSPMPPI
Sbjct: 32  KGIIFK--KVFVLLISRRSASSPMPPI 56


>ref|NP_042462.1| ORF54b [Pinus thunbergii] gi|1262702|dbj|BAA04417.1| ORF54b [Pinus
           thunbergii] gi|145048796|gb|ABP35414.1| ORF54e [Pinus
           koraiensis]
          Length = 54

 Score = 52.0 bits (123), Expect(2) = 2e-07
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = +3

Query: 180 YPFLIGIGITKNGWDNKHPSRSYFGYPYN 266
           YPFL G   ++NGWDNKHPSR YFGYPYN
Sbjct: 23  YPFLKG---SENGWDNKHPSRLYFGYPYN 48



 Score = 28.1 bits (61), Expect(2) = 2e-07
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +1

Query: 118 RGRSTTPRNQQHENFVIVIKYTLSLSGS 201
           RG STT  N+QH++FVI   +   L GS
Sbjct: 2   RGESTTYGNRQHKSFVIAHMHYPFLKGS 29


>ref|XP_003618685.1| Photosystem I assembly protein ycf3 [Medicago truncatula]
           gi|358344504|ref|XP_003636329.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|358349399|ref|XP_003638725.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355493700|gb|AES74903.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355502264|gb|AES83467.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
           gi|355504660|gb|AES85863.1| Photosystem I assembly
           protein ycf3 [Medicago truncatula]
          Length = 66

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +3

Query: 213 NGWDNKHPSRSYFGYPYNHRRPLK 284
           NGWDNKHPSRSYFGYPYNHRR LK
Sbjct: 43  NGWDNKHPSRSYFGYPYNHRRLLK 66