BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042384
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]           121   5e-26
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...   117   1e-24
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   116   2e-24
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...   108   6e-22
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]   107   8e-22

>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score =  121 bits (304), Expect = 5e-26
 Identities = 52/97 (53%), Positives = 70/97 (72%)
 Frame = +3

Query: 48  CDLWGSAPISSVQWFQY*VSFVDDYSKYCWFYPLVKKSDFYCIFIKFKNTIEKLLNFPIK 227
           CDLWG +P+ S Q F+Y V FVDDYS+Y WFYPL  KSDF+ +F+ F+N +E   N  IK
Sbjct: 520 CDLWGPSPVVSKQGFKYYVVFVDDYSRYSWFYPLKAKSDFFAVFVAFQNLVENQFNTKIK 579

Query: 228 ILSTDQGGEFTSNLLENFLSQHGITYQFSCAHTPEQN 338
           +  +D GGEFTSNL++  L+  GI ++ SC +TP+QN
Sbjct: 580 VFQSDGGGEFTSNLMKKHLTDCGIQHRISCPYTPQQN 616


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score =  117 bits (292), Expect = 1e-24
 Identities = 52/97 (53%), Positives = 67/97 (69%)
 Frame = +3

Query: 48  CDLWGSAPISSVQWFQY*VSFVDDYSKYCWFYPLVKKSDFYCIFIKFKNTIEKLLNFPIK 227
           CDLWG AP+SS+Q FQY V F+D+ S++CWFYPL  KSDF  +F+KF++ +E LL   I 
Sbjct: 509 CDLWGPAPVSSIQGFQYYVIFIDNRSRFCWFYPLKHKSDFCSLFMKFQSFVENLLQTKIG 568

Query: 228 ILSTDQGGEFTSNLLENFLSQHGITYQFSCAHTPEQN 338
              +D GGEFTSN     L + GI +  SC HTP+QN
Sbjct: 569 TFQSDGGGEFTSNRFLQHLQESGIQHYISCPHTPQQN 605


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
           Arabidopsis thaliana BAC gb|AF080119 and is a member of
           the reverse transcriptase family PF|00078 [Arabidopsis
           thaliana]
          Length = 1415

 Score =  116 bits (290), Expect = 2e-24
 Identities = 51/97 (52%), Positives = 67/97 (69%)
 Frame = +3

Query: 48  CDLWGSAPISSVQWFQY*VSFVDDYSKYCWFYPLVKKSDFYCIFIKFKNTIEKLLNFPIK 227
           CDLWG +P+ S Q  +Y   FVDDYS+Y WFYPL  KS+F  +FI F+  +E  LN  IK
Sbjct: 517 CDLWGPSPVVSNQGLKYYAIFVDDYSRYSWFYPLHNKSEFLSVFISFQKLVENQLNTKIK 576

Query: 228 ILSTDQGGEFTSNLLENFLSQHGITYQFSCAHTPEQN 338
           +  +D GGEF SN L+  LS+HGI ++ SC +TP+QN
Sbjct: 577 VFQSDGGGEFVSNKLKTHLSEHGIHHRISCPYTPQQN 613


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score =  108 bits (269), Expect = 6e-22
 Identities = 49/97 (50%), Positives = 61/97 (62%)
 Frame = +3

Query: 48  CDLWGSAPISSVQWFQY*VSFVDDYSKYCWFYPLVKKSDFYCIFIKFKNTIEKLLNFPIK 227
           CDLWG +P SSVQ F+Y V F+D YS++ WFYPL  KSDF+  F+ F+  +E  L   IK
Sbjct: 521 CDLWGPSPTSSVQGFRYYVVFIDHYSRFTWFYPLKLKSDFFSTFVMFQKLVENQLGHKIK 580

Query: 228 ILSTDQGGEFTSNLLENFLSQHGITYQFSCAHTPEQN 338
           I   D GGEF S+     L  HGI    SC +TP+QN
Sbjct: 581 IFQCDGGGEFISSQFLKHLQDHGIQQNMSCPYTPQQN 617


>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
          Length = 1453

 Score =  107 bits (268), Expect = 8e-22
 Identities = 48/97 (49%), Positives = 64/97 (65%)
 Frame = +3

Query: 48  CDLWGSAPISSVQWFQY*VSFVDDYSKYCWFYPLVKKSDFYCIFIKFKNTIEKLLNFPIK 227
           CD+WG AP+ S   F Y V F+DDYS++ W YPL  KSDF+ IF++F+  +E   +  IK
Sbjct: 474 CDIWGLAPVKSNLGFNYYVLFIDDYSRFTWLYPLKLKSDFFDIFLQFQKLVENQYSTKIK 533

Query: 228 ILSTDQGGEFTSNLLENFLSQHGITYQFSCAHTPEQN 338
           I  +D G EFTSN  ++ L Q GI +Q SC +TP QN
Sbjct: 534 IFQSDGGAEFTSNRFQSHLQQFGIHHQMSCPYTPSQN 570