BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042370
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]   177   1e-42
emb|CBI35592.3| unnamed protein product [Vitis vinifera]              151   9e-35
ref|NP_187385.1| pentatricopeptide repeat-containing protein [Ar...   105   5e-21
ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp....   101   8e-20

>ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
            mitochondrial [Vitis vinifera]
          Length = 876

 Score =  177 bits (449), Expect = 1e-42
 Identities = 92/190 (48%), Positives = 121/190 (63%)
 Frame = +2

Query: 2    YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
            YTYT++INGLC  GR++EAE +L SM  +GV PNH TY V+VKAHVK GRLDRAF I+S 
Sbjct: 593  YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVST 652

Query: 182  MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
            MVKNGCQPN  IY ALL G ++SN    A  +SS                   + D D  
Sbjct: 653  MVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS-------------------TGDLDAR 693

Query: 362  LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
               + E+ +N  S  +F   D++HAL++RDE++KC     + D+YN L++G CKEGR+ E
Sbjct: 694  SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVP--TEDLYNFLVVGLCKEGRIIE 751

Query: 542  ADHLVQEMLK 571
            AD L Q+M+K
Sbjct: 752  ADQLTQDMVK 761



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 55/191 (28%), Positives = 92/191 (48%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +TYT+LI+ LC+ G+++EA  +   M  +G+ P  +T+  ++  + K G +  AF +LSV
Sbjct: 313 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 372

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           M K  C+PN R Y  L++GL   +K+            Y   L +  +V + +  D    
Sbjct: 373 MEKGNCKPNIRTYNELMEGLCRVSKS------------YKAFLLLRRVVDNGLLPD---- 416

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
                  T N   D    E  +N A  + + +   +G       +  LI G CK GRL +
Sbjct: 417 -----RVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALIDGLCKLGRLEQ 470

Query: 542 ADHLVQEMLKK 574
           A+ ++  M+KK
Sbjct: 471 ANGILGSMVKK 481



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY++LI+GLC+ GRL+EA  L   M + G  P+  TYTV++KA   IG  D+A  +L  M
Sbjct: 244 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 303

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVV---SSMESLYSEPLPIHELVSSSVSTD-- 349
               C PN   Y  L+  L    K  +A  V        L    +  + L++        
Sbjct: 304 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 363

Query: 350 -EDRHLTKALESTD-----NWYSDRIFGEADINHA----LRLRDEVEKCSGSSWSWDMYN 499
                L   +E  +       Y++ + G   ++ +    L LR  V+  +G       YN
Sbjct: 364 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD--NGLLPDRVTYN 421

Query: 500 ILIMGFCKEGRLFEADHLVQEM 565
           IL+ GFCKEG+L  A ++   M
Sbjct: 422 ILVDGFCKEGQLNMAFNIFNSM 443



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 53/188 (28%), Positives = 86/188 (45%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +T+T LI+GLC++GRL++A  +L SM   G+  + VT+T ++  H KIG+      +   
Sbjct: 453 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 512

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           MV+N C      +   L  L    K N+A  +      Y        LV S V+      
Sbjct: 513 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG-------LVPSVVTH----- 560

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
            T  +E           GE  ++  +  R +   CS + ++   Y I+I G C  GR+ E
Sbjct: 561 -TILIEGHCR------AGETALSLKMLERMKQAGCSPNVYT---YTIIINGLCNNGRVEE 610

Query: 542 ADHLVQEM 565
           A+ ++  M
Sbjct: 611 AETILFSM 618



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 51/175 (29%), Positives = 83/175 (47%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY +L++G C+ G+L+ A  + +SM   G+ P+  T+T ++    K+GRL++A GIL  M
Sbjct: 419 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 478

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHL 364
           VK G   +   + AL+ G     K    +V    E++                  E+R L
Sbjct: 479 VKKGISLDEVTFTALIDGHCKIGKAK--DVCFLFENMV-----------------ENRCL 519

Query: 365 TKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEG 529
           T A   T N + D +  +  +N A  +  ++ K  G   S   + ILI G C+ G
Sbjct: 520 TTA--HTFNCFLDALGKDYKLNEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAG 571



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 7/194 (3%)
 Frame = +2

Query: 11  TVLINGLCQIGRLDEAEILLHSMY-DYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVMV 187
           T L+   C+   L EA  +   M  +    PN VTY++++    + GRL+ AF +   MV
Sbjct: 210 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 269

Query: 188 KNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHLT 367
           + GCQP+ R Y  L+K       T++A     M+ L                   D   T
Sbjct: 270 EKGCQPSTRTYTVLIKAKCDIGMTDKA-----MKML-------------------DEMAT 305

Query: 368 KALESTDNWYS---DRIFGEADINHALRLRDEVEK---CSGSSWSWDMYNILIMGFCKEG 529
           KA     + Y+   DR+  E  I  A  +  ++ K   C G       +N LI G+CKEG
Sbjct: 306 KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII----TFNALINGYCKEG 361

Query: 530 RLFEADHLVQEMLK 571
            +  A  L+  M K
Sbjct: 362 WVVSAFQLLSVMEK 375


>emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  177 bits (449), Expect = 1e-42
 Identities = 92/190 (48%), Positives = 121/190 (63%)
 Frame = +2

Query: 2    YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
            YTYT++INGLC  GR++EAE +L SM  +GV PNH TY V+VKAHVK GRLDRAF I+S 
Sbjct: 550  YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVST 609

Query: 182  MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
            MVKNGCQPN  IY ALL G ++SN    A  +SS                   + D D  
Sbjct: 610  MVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS-------------------TGDLDAR 650

Query: 362  LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
               + E+ +N  S  +F   D++HAL++RDE++KC     + D+YN L++G CKEGR+ E
Sbjct: 651  SLSSEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVP--TEDLYNFLVVGLCKEGRIIE 708

Query: 542  ADHLVQEMLK 571
            AD L Q+M+K
Sbjct: 709  ADQLTQDMVK 718



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 55/191 (28%), Positives = 92/191 (48%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +TYT+LI+ LC+ G+++EA  +   M  +G+ P  +T+  ++  + K G +  AF +LSV
Sbjct: 270 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 329

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           M K  C+PN R Y  L++GL   +K+            Y   L +  +V + +  D    
Sbjct: 330 MEKGNCKPNIRTYNELMEGLCRVSKS------------YKAFLLLRRVVDNGLLPD---- 373

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
                  T N   D    E  +N A  + + +   +G       +  LI G CK GRL +
Sbjct: 374 -----RVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALIDGLCKLGRLEQ 427

Query: 542 ADHLVQEMLKK 574
           A+ ++  M+KK
Sbjct: 428 ANGILGSMVKK 438



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY++LI+GLC+ GRL+EA  L   M + G  P+  TYTV++KA   IG  D+A  +L  M
Sbjct: 201 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 260

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVV---SSMESLYSEPLPIHELVSSSVSTD-- 349
               C PN   Y  L+  L    K  +A  V        L    +  + L++        
Sbjct: 261 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 320

Query: 350 -EDRHLTKALESTD-----NWYSDRIFGEADINHA----LRLRDEVEKCSGSSWSWDMYN 499
                L   +E  +       Y++ + G   ++ +    L LR  V+  +G       YN
Sbjct: 321 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD--NGLLPDRVTYN 378

Query: 500 ILIMGFCKEGRLFEADHLVQEM 565
           IL+ GFCKEG+L  A ++   M
Sbjct: 379 ILVDGFCKEGQLNMAFNIFNSM 400



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 53/188 (28%), Positives = 86/188 (45%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +T+T LI+GLC++GRL++A  +L SM   G+  + VT+T ++  H KIG+      +   
Sbjct: 410 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 469

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           MV+N C      +   L  L    K N+A  +      Y        LV S V+      
Sbjct: 470 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG-------LVPSVVTH----- 517

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
            T  +E           GE  ++  +  R +   CS + ++   Y I+I G C  GR+ E
Sbjct: 518 -TILIEGHCR------AGETALSLKMLERMKQAGCSPNVYT---YTIIINGLCNNGRVEE 567

Query: 542 ADHLVQEM 565
           A+ ++  M
Sbjct: 568 AETILFSM 575



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 51/175 (29%), Positives = 83/175 (47%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY +L++G C+ G+L+ A  + +SM   G+ P+  T+T ++    K+GRL++A GIL  M
Sbjct: 376 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 435

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHL 364
           VK G   +   + AL+ G     K    +V    E++                  E+R L
Sbjct: 436 VKKGISLDEVTFTALIDGHCKIGKAK--DVCFLFENMV-----------------ENRCL 476

Query: 365 TKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEG 529
           T A   T N + D +  +  +N A  +  ++ K  G   S   + ILI G C+ G
Sbjct: 477 TTA--HTFNCFLDALGKDYKLNEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAG 528



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 7/194 (3%)
 Frame = +2

Query: 11  TVLINGLCQIGRLDEAEILLHSMY-DYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVMV 187
           T L+   C+   L EA  +   M  +    PN VTY++++    + GRL+ AF +   MV
Sbjct: 167 TSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 226

Query: 188 KNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHLT 367
           + GCQP+ R Y  L+K       T++A     M+ L                   D   T
Sbjct: 227 EKGCQPSTRTYTVLIKAKCDIGMTDKA-----MKML-------------------DEMAT 262

Query: 368 KALESTDNWYS---DRIFGEADINHALRLRDEVEK---CSGSSWSWDMYNILIMGFCKEG 529
           KA     + Y+   DR+  E  I  A  +  ++ K   C G       +N LI G+CKEG
Sbjct: 263 KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII----TFNALINGYCKEG 318

Query: 530 RLFEADHLVQEMLK 571
            +  A  L+  M K
Sbjct: 319 WVVSAFQLLSVMEK 332


>emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  151 bits (381), Expect = 9e-35
 Identities = 86/190 (45%), Positives = 112/190 (58%)
 Frame = +2

Query: 2    YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
            YTYT++INGLC  GR++EAE +L SM  +GV PNH TY V+VKAHVK GRLDRAF I+S 
Sbjct: 616  YTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVST 675

Query: 182  MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
            MVKNGCQPN  IY ALL G ++SN    A  +SS            +L + S+S++E   
Sbjct: 676  MVKNGCQPNSHIYSALLSGFVLSNTAIGARALSS----------TGDLDARSLSSEE--- 722

Query: 362  LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
                                  N    L +E++KC     + D+YN L++G CKEGR+ E
Sbjct: 723  ----------------------NDNNCLSNEIKKCGVP--TEDLYNFLVVGLCKEGRIIE 758

Query: 542  ADHLVQEMLK 571
            AD L Q+M+K
Sbjct: 759  ADQLTQDMVK 768



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 55/191 (28%), Positives = 92/191 (48%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +TYT+LI+ LC+ G+++EA  +   M  +G+ P  +T+  ++  + K G +  AF +LSV
Sbjct: 336 HTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSV 395

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           M K  C+PN R Y  L++GL   +K+            Y   L +  +V + +  D    
Sbjct: 396 MEKGNCKPNIRTYNELMEGLCRVSKS------------YKAFLLLRRVVDNGLLPD---- 439

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
                  T N   D    E  +N A  + + +   +G       +  LI G CK GRL +
Sbjct: 440 -----RVTYNILVDGFCKEGQLNMAFNIFNSMNS-AGLEPDGFTFTALIDGLCKLGRLEQ 493

Query: 542 ADHLVQEMLKK 574
           A+ ++  M+KK
Sbjct: 494 ANGILGSMVKK 504



 Score = 72.8 bits (177), Expect = 4e-11
 Identities = 61/202 (30%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY++LI+GLC+ GRL+EA  L   M + G  P+  TYTV++KA   IG  D+A  +L  M
Sbjct: 267 TYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEM 326

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVV---SSMESLYSEPLPIHELVSSSVSTD-- 349
               C PN   Y  L+  L    K  +A  V        L    +  + L++        
Sbjct: 327 ATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWV 386

Query: 350 -EDRHLTKALESTD-----NWYSDRIFGEADINHA----LRLRDEVEKCSGSSWSWDMYN 499
                L   +E  +       Y++ + G   ++ +    L LR  V+  +G       YN
Sbjct: 387 VSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD--NGLLPDRVTYN 444

Query: 500 ILIMGFCKEGRLFEADHLVQEM 565
           IL+ GFCKEG+L  A ++   M
Sbjct: 445 ILVDGFCKEGQLNMAFNIFNSM 466



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 53/188 (28%), Positives = 86/188 (45%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +T+T LI+GLC++GRL++A  +L SM   G+  + VT+T ++  H KIG+      +   
Sbjct: 476 FTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFEN 535

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           MV+N C      +   L  L    K N+A  +      Y        LV S V+      
Sbjct: 536 MVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYG-------LVPSVVTH----- 583

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
            T  +E           GE  ++  +  R +   CS + ++   Y I+I G C  GR+ E
Sbjct: 584 -TILIEGHCR------AGETALSLKMLERMKQAGCSPNVYT---YTIIINGLCNNGRVEE 633

Query: 542 ADHLVQEM 565
           A+ ++  M
Sbjct: 634 AETILFSM 641



 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 51/175 (29%), Positives = 83/175 (47%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           TY +L++G C+ G+L+ A  + +SM   G+ P+  T+T ++    K+GRL++A GIL  M
Sbjct: 442 TYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSM 501

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHL 364
           VK G   +   + AL+ G     K    +V    E++                  E+R L
Sbjct: 502 VKKGISLDEVTFTALIDGHCKIGKAK--DVCFLFENMV-----------------ENRCL 542

Query: 365 TKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEG 529
           T A   T N + D +  +  +N A  +  ++ K  G   S   + ILI G C+ G
Sbjct: 543 TTA--HTFNCFLDALGKDYKLNEANAMLGKMMK-YGLVPSVVTHTILIEGHCRAG 594



 Score = 55.8 bits (133), Expect = 5e-06
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 7/194 (3%)
 Frame = +2

Query: 11  TVLINGLCQIGRLDEAEILLHSMY-DYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVMV 187
           T L+   C+   L EA  +   M  +    PN VTY++++    + GRL+ AF +   MV
Sbjct: 233 TSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 292

Query: 188 KNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRHLT 367
           + GCQP+ R Y  L+K       T++A     M+ L                   D   T
Sbjct: 293 EKGCQPSTRTYTVLIKAKCDIGMTDKA-----MKML-------------------DEMAT 328

Query: 368 KALESTDNWYS---DRIFGEADINHALRLRDEVEK---CSGSSWSWDMYNILIMGFCKEG 529
           KA     + Y+   DR+  E  I  A  +  ++ K   C G       +N LI G+CKEG
Sbjct: 329 KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGII----TFNALINGYCKEG 384

Query: 530 RLFEADHLVQEMLK 571
            +  A  L+  M K
Sbjct: 385 WVVSAFQLLSVMEK 398


>ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
           gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein
           [Arabidopsis thaliana] gi|332641002|gb|AEE74523.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 880

 Score =  105 bits (262), Expect = 5e-21
 Identities = 55/113 (48%), Positives = 77/113 (68%), Gaps = 3/113 (2%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           Y YT++INGLCQ GR++EAE LL +M D GV PNHVTYTV+VK +V  G+LDRA   +  
Sbjct: 617 YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNK---TNQAEVVSSMESLYSEPLPIHELVS 331
           MV+ G + N RIY +LL+G ++S K    ++   VS +    ++P  I+EL+S
Sbjct: 677 MVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDIALRETDPECINELIS 729



 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           +Y++LI+GLC++GRL+EA  L   M + G  P+  TYTV++KA    G +D+AF +   M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSS---MESLYSEPLPIHELVSSSVSTDED 355
           +  GC+PN   Y  L+ GL    K  +A  V      + ++   +  + L++      +D
Sbjct: 328 IPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYC---KD 384

Query: 356 RHLTKALE-----------STDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDM--Y 496
             +  A E                +++ + G   +    +    +++   +  S D+  Y
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444

Query: 497 NILIMGFCKEGRLFEADHLVQEM 565
           N+LI G C+EG +  A  L+  M
Sbjct: 445 NVLIDGLCREGHMNTAYKLLSSM 467



 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 52/191 (27%), Positives = 90/191 (47%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +TYTVLI+GLC+ G+++EA  +   M    + P+ +TY  ++  + K GR+  AF +L+V
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTV 396

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           M K  C+PN R +  L++GL    K  +A  +            +  ++ + +S D   +
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHL------------LKRMLDNGLSPDIVSY 444

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEGRLFE 541
                    N   D +  E  +N A +L   +  C         +  +I  FCK+G+   
Sbjct: 445 ---------NVLIDGLCREGHMNTAYKLLSSM-NCFDIEPDCLTFTAIINAFCKQGKADV 494

Query: 542 ADHLVQEMLKK 574
           A   +  ML+K
Sbjct: 495 ASAFLGLMLRK 505



 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 14/201 (6%)
 Frame = +2

Query: 5    TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
            +Y VLI+GLC+ G ++ A  LL SM  + + P+ +T+T ++ A  K G+ D A   L +M
Sbjct: 443  SYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLM 502

Query: 185  VKNGCQPNYRIYCALLKGLLVSNKTNQA----EVVSSMESLYSEPL--PIHELVSSSVST 346
            ++ G   +      L+ G+    KT  A    E +  M  L +      I +++S     
Sbjct: 503  LRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKV 562

Query: 347  DEDRHLTKALES--------TDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNI 502
             E+  +   +          T     D +    DI  + R+  E+ K SG   +   Y I
Sbjct: 563  KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRIL-ELMKLSGCLPNVYPYTI 621

Query: 503  LIMGFCKEGRLFEADHLVQEM 565
            +I G C+ GR+ EA+ L+  M
Sbjct: 622  IINGLCQFGRVEEAEKLLSAM 642



 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 7/195 (3%)
 Frame = +2

Query: 11  TVLINGLCQIGRLDEAEILLHSMY-DYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVMV 187
           T L+ G C+   L +A  +   M  +    PN V+Y++++    ++GRL+ AFG+   M 
Sbjct: 234 TSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMG 293

Query: 188 KNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLP------IHELVSSSVSTD 349
           + GCQP+ R Y  L+K L          ++    +L+ E +P      +H          
Sbjct: 294 EKGCQPSTRTYTVLIKALC------DRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLC 347

Query: 350 EDRHLTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNILIMGFCKEG 529
            D  + +A         DRIF                       S   YN LI G+CK+G
Sbjct: 348 RDGKIEEANGVCRKMVKDRIFP----------------------SVITYNALINGYCKDG 385

Query: 530 RLFEADHLVQEMLKK 574
           R+  A  L+  M K+
Sbjct: 386 RVVPAFELLTVMEKR 400


>ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297330479|gb|EFH60898.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  101 bits (252), Expect = 8e-20
 Identities = 74/207 (35%), Positives = 107/207 (51%), Gaps = 18/207 (8%)
 Frame = +2

Query: 2    YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
            Y YT++INGLCQ GR++EAE LL +M D GV PNHVTYTV+VK +V  G+LDRA   +  
Sbjct: 617  YPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRA 676

Query: 182  MVKNGCQPNYRIYCALLKGLLVSNKTNQ-------AEVVSSMESLYSEPLPIHELVSSSV 340
            MV+ G + N RIY +LL+G ++S K  +        E++S +E L      +   + + +
Sbjct: 677  MVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKELISVVEQLGGSTSGLCIFLVTRL 736

Query: 341  ----STDEDRHLTKA-------LESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSW 487
                 TDE   L +        LE   +   +    +      + L   V K SG   S+
Sbjct: 737  CKEGRTDESNGLVQTILKSGVFLEKAIDIIMESYCSKKKHTKCVELITLVLK-SGFVPSF 795

Query: 488  DMYNILIMGFCKEGRLFEADHLVQEML 568
              + ++I G  KEG    A  LV E+L
Sbjct: 796  KSFCLVIQGLKKEGDTERARELVMELL 822



 Score = 79.0 bits (193), Expect = 5e-13
 Identities = 55/203 (27%), Positives = 97/203 (47%), Gaps = 16/203 (7%)
 Frame = +2

Query: 5   TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
           +Y++LI+GLC++GRL+EA  L   M + G  P+  TYTV++KA    G +D+AF +   M
Sbjct: 268 SYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEM 327

Query: 185 VKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSS---MESLYSEPLPIHELVSSSVSTDED 355
           +  GC+PN   Y  L+ GL    K  +A  V      + ++   +  + L++      +D
Sbjct: 328 IARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYC---KD 384

Query: 356 RHLTKALE-----------STDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDM--Y 496
             +  A E                +++ + G   +    +    +++   +  S D+  Y
Sbjct: 385 GRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSY 444

Query: 497 NILIMGFCKEGRLFEADHLVQEM 565
           N+LI G C+EG +  A  L+  M
Sbjct: 445 NVLIDGLCREGHMNVAYKLLTSM 467



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 6/197 (3%)
 Frame = +2

Query: 2   YTYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSV 181
           +TYTVLI+GLC+ G+++EA  +   M   G+ P+ +TY  ++  + K GR+  AF +L+V
Sbjct: 337 HTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTV 396

Query: 182 MVKNGCQPNYRIYCALLKGLLVSNKTNQAEVVSSMESLYSEPLPIHELVSSSVSTDEDRH 361
           M K  C+PN R +  L++GL    K  +A  +            +  ++ + +S D   +
Sbjct: 397 MEKRACKPNVRTFNELMEGLCRVGKPYKAVHL------------LKRMLDNGLSPDIVSY 444

Query: 362 LTKALESTDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDM------YNILIMGFCK 523
                    N   D +  E  +N A +L   +        S+D+      +  +I  FCK
Sbjct: 445 ---------NVLIDGLCREGHMNVAYKLLTSMN-------SFDLEPDCLTFTAIINAFCK 488

Query: 524 EGRLFEADHLVQEMLKK 574
           +G+   A   +  ML+K
Sbjct: 489 QGKADVASAFLGLMLRK 505



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 14/201 (6%)
 Frame = +2

Query: 5    TYTVLINGLCQIGRLDEAEILLHSMYDYGVIPNHVTYTVVVKAHVKIGRLDRAFGILSVM 184
            +Y VLI+GLC+ G ++ A  LL SM  + + P+ +T+T ++ A  K G+ D A   L +M
Sbjct: 443  SYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLM 502

Query: 185  VKNGCQPNYRIYCALLKGLLVSNKTNQA----EVVSSMESLYSEPL--PIHELVSSSVST 346
            ++ G   +      L+ G+    KT  A    E +  M  L +      I +++S     
Sbjct: 503  LRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKL 562

Query: 347  DEDRHLTKALES--------TDNWYSDRIFGEADINHALRLRDEVEKCSGSSWSWDMYNI 502
             E+  +   +          T     D +    DI+ + R+  E+ K SG   +   Y I
Sbjct: 563  KEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRML-ELMKLSGCLPNVYPYTI 621

Query: 503  LIMGFCKEGRLFEADHLVQEM 565
            +I G C+ GR+ EA+ L+  M
Sbjct: 622  IINGLCQFGRVEEAEKLLSAM 642