BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042363
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI37903.3| unnamed protein product [Vitis vinifera]              133   1e-29
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   133   1e-29
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   130   1e-28
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   125   5e-27
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   124   6e-27

>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  133 bits (335), Expect = 1e-29
 Identities = 60/91 (65%), Positives = 76/91 (83%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDM 100
           HGQ+   G+LSN+V+SSS++DAY K G++GD +K+FDEM  RDVLAWTT+VSGYAK GDM
Sbjct: 215 HGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDM 274

Query: 99  EMARRLFDEIPEPNPVSWTSLISGYVRSGLG 7
           + A  LF E+PE NPVSWT+LISGY R+G+G
Sbjct: 275 KSANELFVEMPEKNPVSWTALISGYARNGMG 305



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 29/79 (36%), Positives = 55/79 (69%)
 Frame = -3

Query: 237 ISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEMARRLFDEIPEPN 58
           +S+ +++ YAK G   + +K+FD+M  R++ +W  ++SGYAK+G ++ AR+LFD++PE +
Sbjct: 97  LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 57  PVSWTSLISGYVRSGLGPE 1
            VSW +++  + + G   E
Sbjct: 157 VVSWNTMVIAHAQCGYWDE 175



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVR-DVLAWTTLVSGYAKVGD 103
           H  + R  +  N ++ S+++D Y+K G +G G+K+FD M  + DV+ W T++S  A+ G 
Sbjct: 347 HAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGC 406

Query: 102 MEMARRLFDEI----PEPNPVSWTSLISGYVRSGL 10
            E A ++ D++     +P+ +++  +++    SGL
Sbjct: 407 GEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGL 441


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  133 bits (335), Expect = 1e-29
 Identities = 60/91 (65%), Positives = 76/91 (83%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDM 100
           HGQ+   G+LSN+V+SSS++DAY K G++GD +K+FDEM  RDVLAWTT+VSGYAK GDM
Sbjct: 215 HGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDM 274

Query: 99  EMARRLFDEIPEPNPVSWTSLISGYVRSGLG 7
           + A  LF E+PE NPVSWT+LISGY R+G+G
Sbjct: 275 KSANELFVEMPEKNPVSWTALISGYARNGMG 305



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 29/79 (36%), Positives = 55/79 (69%)
 Frame = -3

Query: 237 ISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEMARRLFDEIPEPN 58
           +S+ +++ YAK G   + +K+FD+M  R++ +W  ++SGYAK+G ++ AR+LFD++PE +
Sbjct: 97  LSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKD 156

Query: 57  PVSWTSLISGYVRSGLGPE 1
            VSW +++  + + G   E
Sbjct: 157 VVSWNTMVIAHAQCGYWDE 175



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVR-DVLAWTTLVSGYAKVGD 103
           H  + R  +  N ++ S+++D Y+K G +G G+K+FD M  + DV+ W T++S  A+ G 
Sbjct: 347 HAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQHGC 406

Query: 102 MEMARRLFDEI----PEPNPVSWTSLISGYVRSGL 10
            E A ++ D++     +P+ +++  +++    SGL
Sbjct: 407 GEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGL 441


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  130 bits (326), Expect = 1e-28
 Identities = 61/91 (67%), Positives = 75/91 (82%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDM 100
           HGQV   G+LSNLVISSS++DAYAK   +GD +++FDEM +RDVLAWTT+VSGYA+ GD+
Sbjct: 206 HGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDV 265

Query: 99  EMARRLFDEIPEPNPVSWTSLISGYVRSGLG 7
           E AR LFD +PE NPV+WTSLI+GY R  LG
Sbjct: 266 EAARELFDLMPEKNPVAWTSLIAGYARHDLG 296



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 30/78 (38%), Positives = 54/78 (69%)
 Frame = -3

Query: 246 NLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEMARRLFDEIP 67
           N  +++ +++ Y+K G      K+FDEM  R++ +W  ++SGYAK+G ++ AR+LFD++P
Sbjct: 85  NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMP 144

Query: 66  EPNPVSWTSLISGYVRSG 13
           E + VSW +++  Y +SG
Sbjct: 145 EKDVVSWNTMVIAYAKSG 162


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score =  125 bits (313), Expect = 5e-27
 Identities = 58/91 (63%), Positives = 72/91 (79%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDM 100
           HGQV   G+LSN+V+S SI+DAYAK G +   K+ FDEM V+D+  WTTL+SGYAK+GDM
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDM 261

Query: 99  EMARRLFDEIPEPNPVSWTSLISGYVRSGLG 7
           E A +LF E+PE NPVSWT+LI+GYVR G G
Sbjct: 262 EAAEKLFCEMPEKNPVSWTALIAGYVRQGSG 292



 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 30/78 (38%), Positives = 50/78 (64%)
 Frame = -3

Query: 246 NLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEMARRLFDEIP 67
           N ++S+ ++  Y K G   D  K+FD+M +R++ +W  +VSGY K G +  AR +FD +P
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 66  EPNPVSWTSLISGYVRSG 13
           E + VSW +++ GY + G
Sbjct: 141 ERDVVSWNTMVIGYAQDG 158



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
 Frame = -3

Query: 273 QVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEM 94
           +VF   +L NL   +++V  Y KSG++   + +FD MP RDV++W T+V GYA+ G++  
Sbjct: 103 KVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHE 162

Query: 93  ARRLFDEIPEP----NPVSWTSLISGYVRS 16
           A   + E        N  S+  L++  V+S
Sbjct: 163 ALWFYKEFRRSGIKFNEFSFAGLLTACVKS 192


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/91 (63%), Positives = 72/91 (79%)
 Frame = -3

Query: 279 HGQVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDM 100
           HGQV   G+LSN+V+S SI+DAYAK G +   K+ FDEM V+D+  WTTL+SGYAK+GDM
Sbjct: 202 HGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDM 261

Query: 99  EMARRLFDEIPEPNPVSWTSLISGYVRSGLG 7
           E A +LF E+PE NPVSWT+LI+GYVR G G
Sbjct: 262 EAADKLFREMPEKNPVSWTALIAGYVRQGSG 292



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 29/78 (37%), Positives = 50/78 (64%)
 Frame = -3

Query: 246 NLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEMARRLFDEIP 67
           N ++S+ ++  Y K G   D  K+FD+M +R++ +W  +VSG+ K G +  AR +FD +P
Sbjct: 81  NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMP 140

Query: 66  EPNPVSWTSLISGYVRSG 13
           E + VSW +++ GY + G
Sbjct: 141 ERDVVSWNTMVIGYAQDG 158



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
 Frame = -3

Query: 273 QVFRFGYLSNLVISSSIVDAYAKSGVIGDGKKMFDEMPVRDVLAWTTLVSGYAKVGDMEM 94
           +VF   +L NL   +++V  + KSG++   + +FD MP RDV++W T+V GYA+ G++  
Sbjct: 103 KVFDQMHLRNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHE 162

Query: 93  ARRLFDEIPEP----NPVSWTSLISGYVRS 16
           A   F E+       N  S+  L++  V+S
Sbjct: 163 ALWFFKELRRSGIKFNEFSFAGLLTACVKS 192