BLASTX nr result
ID: Coptis23_contig00042362
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00042362
(349 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat... 164 9e-39
emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera] 163 1e-38
ref|XP_002529336.1| pentatricopeptide repeat-containing protein,... 137 9e-31
ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat... 135 3e-30
ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat... 135 3e-30
>ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 164 bits (414), Expect = 9e-39
Identities = 80/116 (68%), Positives = 95/116 (81%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
GLC+V E+ LAF++K+EMV L +DS +Y+TLI+ L GRK EV VLEEMR NGC
Sbjct: 228 GLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCK 286
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKVKE 348
PDTVTYN MI+GFCNEKDFE+A+G L+EMV KGCKPDVISYNVI+SGLCKEGK +E
Sbjct: 287 PDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWRE 342
Score = 80.5 bits (197), Expect = 1e-13
Identities = 44/115 (38%), Positives = 58/115 (50%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G C K+ + A+ V EEMV + D YN +ISGL G+ E N + E+M R GC
Sbjct: 298 GFCNEKDFEAAYGVLEEMVAK-GCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCT 356
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKVK 345
PD +Y ++ G C F A L EMV KG P S V LC+EG ++
Sbjct: 357 PDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLE 411
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +1
Query: 79 DSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCVPDTVTYNVMITGFCNEKDFESAFGGL 258
D YN LI+ SG G+ V +EM R P+ VT+ +I+G C + + AF
Sbjct: 147 DVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLK 206
Query: 259 KEMVEK-GCKPDVISYNVIVSGLCK 330
++MV+ KP+ Y ++ GLC+
Sbjct: 207 EDMVKVFNVKPNAFVYASLMKGLCR 231
>emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 163 bits (413), Expect = 1e-38
Identities = 80/116 (68%), Positives = 95/116 (81%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
GLC+V E+ LAF++K+EMV L +DS +Y+TLI+ L GRK EV VLEEMR NGC
Sbjct: 228 GLCRVNELSLAFELKKEMVAN-KLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCK 286
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKVKE 348
PDTVTYN MI+GFCNEKDFE+A+G L+EMV KGCKPDVISYNVI+SGLCKEGK +E
Sbjct: 287 PDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWRE 342
Score = 77.0 bits (188), Expect = 1e-12
Identities = 43/109 (39%), Positives = 54/109 (49%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G C K+ + A+ V EEMVV+ D YN +ISGL G+ E N + E+M R GC
Sbjct: 298 GFCNEKDFEAAYGVLEEMVVK-GCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCT 356
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLC 327
PD +Y ++ G C F A L EMV KG P S V LC
Sbjct: 357 PDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASXTKFVEALC 405
>ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531207|gb|EEF33053.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 610
Score = 137 bits (345), Expect = 9e-31
Identities = 71/116 (61%), Positives = 84/116 (72%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
GLC V E+ A ++KEEM + + VDSA+Y+TLISGL GRK EV GVL EM GC
Sbjct: 232 GLCAVGELSFALRLKEEMERD-GVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCK 290
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKVKE 348
DTVTYNVMI GFC +KDFE+A+ L EM+E CKPDVISYNVI+ LCK+GK E
Sbjct: 291 ADTVTYNVMINGFCKDKDFETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSE 346
Score = 78.2 bits (191), Expect = 7e-13
Identities = 43/111 (38%), Positives = 61/111 (54%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
GLC ++ AFK+K+ MV L + VY TLI GL G + EEM R+G
Sbjct: 196 GLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGELSFALRLKEEMERDGVK 255
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKE 333
D+ Y+ +I+G + FG L EM KGCK D ++YNV+++G CK+
Sbjct: 256 VDSAIYSTLISGLFKVGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKD 306
Score = 71.6 bits (174), Expect = 6e-11
Identities = 38/112 (33%), Positives = 59/112 (52%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G CK K+ + A+K+ +EM+ E D YN ++ L G+ E + + E+M R GC
Sbjct: 302 GFCKDKDFETAYKILDEMM-ENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCA 360
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEG 336
PD V+Y ++ G + +F+ A L EMV KG P S ++ LC+ G
Sbjct: 361 PDVVSYRIVFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNG 412
>ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 135 bits (341), Expect = 3e-30
Identities = 68/114 (59%), Positives = 81/114 (71%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G C V E++ AFK+KEEMV N+ + SAVY+TLIS L GRK EV+ +L EM NGC
Sbjct: 167 GFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCK 225
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKV 342
PDTVTYN +I G C E D ESA + EMVEKGCKPDV S+N I+ LCKEGK+
Sbjct: 226 PDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKL 279
Score = 70.1 bits (170), Expect = 2e-10
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G CK +++ A +V +EMV E D +NT+I L G+ + +LE+M R GC
Sbjct: 237 GHCKENDLESAHRVMDEMV-EKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCP 295
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKE 333
PD ++Y ++ G C + A L EM+ KG P S N +V LC+E
Sbjct: 296 PDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQE 346
>ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 135 bits (341), Expect = 3e-30
Identities = 68/114 (59%), Positives = 81/114 (71%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G C V E++ AFK+KEEMV N+ + SAVY+TLIS L GRK EV+ +L EM NGC
Sbjct: 300 GFCGVGELNFAFKLKEEMVTS-NVKLVSAVYSTLISALFKHGRKEEVSDILREMGENGCK 358
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKEGKV 342
PDTVTYN +I G C E D ESA + EMVEKGCKPDV S+N I+ LCKEGK+
Sbjct: 359 PDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKL 412
Score = 70.1 bits (170), Expect = 2e-10
Identities = 39/111 (35%), Positives = 58/111 (52%)
Frame = +1
Query: 1 GLCKVKEMDLAFKVKEEMVVEMNLGVDSAVYNTLISGLLGSGRKGEVNGVLEEMRRNGCV 180
G CK +++ A +V +EMV E D +NT+I L G+ + +LE+M R GC
Sbjct: 370 GHCKENDLESAHRVMDEMV-EKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCP 428
Query: 181 PDTVTYNVMITGFCNEKDFESAFGGLKEMVEKGCKPDVISYNVIVSGLCKE 333
PD ++Y ++ G C + A L EM+ KG P S N +V LC+E
Sbjct: 429 PDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQE 479