BLASTX nr result

ID: Coptis23_contig00042342 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00042342
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318327.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_002270937.1| PREDICTED: glutamate decarboxylase 1 [Vitis ...   104   9e-21
ref|NP_001233822.1| glutamate decarboxylase isoform2 [Solanum ly...   103   2e-20
ref|XP_004165664.1| PREDICTED: glutamate decarboxylase-like [Cuc...   100   9e-20
ref|XP_004137382.1| PREDICTED: glutamate decarboxylase-like [Cuc...   100   9e-20

>ref|XP_002318327.1| predicted protein [Populus trichocarpa] gi|222859000|gb|EEE96547.1|
           predicted protein [Populus trichocarpa]
          Length = 501

 Score =  106 bits (264), Expect = 2e-21
 Identities = 51/86 (59%), Positives = 59/86 (68%)
 Frame = -3

Query: 262 GYKNVMHNCMENARQLREGLEKTGHFEIVSKVKGIPXXXXXXXXXXXXXXXXXXXXLRHY 83
           GYK +M NC+ENAR LREGLEKTG F+IVSK KG+P                    LR +
Sbjct: 339 GYKRIMENCLENARVLREGLEKTGRFDIVSKDKGVPLVAFSLKDSSKHTVFEIAESLRRF 398

Query: 82  GWIVPAYTMPANAQHVIILRVVVRED 5
           GWI+PAYTMPANAQH+ +LRVVVRED
Sbjct: 399 GWIIPAYTMPANAQHIAVLRVVVRED 424


>ref|XP_002270937.1| PREDICTED: glutamate decarboxylase 1 [Vitis vinifera]
           gi|297738155|emb|CBI27356.3| unnamed protein product
           [Vitis vinifera]
          Length = 488

 Score =  104 bits (259), Expect = 9e-21
 Identities = 50/86 (58%), Positives = 57/86 (66%)
 Frame = -3

Query: 262 GYKNVMHNCMENARQLREGLEKTGHFEIVSKVKGIPXXXXXXXXXXXXXXXXXXXXLRHY 83
           GY+N+M NC ENAR L+EGLEKTGHF IVSK  G+P                    LR Y
Sbjct: 339 GYRNIMENCQENARVLKEGLEKTGHFNIVSKENGVPLVAFSLKDNSCHNEFEVSDMLRRY 398

Query: 82  GWIVPAYTMPANAQHVIILRVVVRED 5
           GWIVPAYTMP +AQHV +LRVV+RED
Sbjct: 399 GWIVPAYTMPPDAQHVTVLRVVIRED 424


>ref|NP_001233822.1| glutamate decarboxylase isoform2 [Solanum lycopersicum]
           gi|171854579|dbj|BAG16480.1| glutamate decarboxylase
           isoform2 [Solanum lycopersicum]
          Length = 503

 Score =  103 bits (256), Expect = 2e-20
 Identities = 51/86 (59%), Positives = 57/86 (66%)
 Frame = -3

Query: 262 GYKNVMHNCMENARQLREGLEKTGHFEIVSKVKGIPXXXXXXXXXXXXXXXXXXXXLRHY 83
           GYKNVM NC ENAR LREGLEKTG FEIVSK  G+P                    LR +
Sbjct: 339 GYKNVMENCQENARVLREGLEKTGRFEIVSKEVGVPLVAFSLKDNSKHDEFEISETLRRF 398

Query: 82  GWIVPAYTMPANAQHVIILRVVVRED 5
           GWIVPAYTMP +AQH+ +LRVV+RED
Sbjct: 399 GWIVPAYTMPPDAQHITVLRVVIRED 424


>ref|XP_004165664.1| PREDICTED: glutamate decarboxylase-like [Cucumis sativus]
          Length = 496

 Score =  100 bits (250), Expect = 9e-20
 Identities = 49/86 (56%), Positives = 57/86 (66%)
 Frame = -3

Query: 262 GYKNVMHNCMENARQLREGLEKTGHFEIVSKVKGIPXXXXXXXXXXXXXXXXXXXXLRHY 83
           GYKNVM NC ENAR LREG+EK G FE+VSK  G+P                    LR +
Sbjct: 338 GYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRF 397

Query: 82  GWIVPAYTMPANAQHVIILRVVVRED 5
           GWIVPAYTMPA+AQH+ +LRVV+RED
Sbjct: 398 GWIVPAYTMPADAQHIAVLRVVIRED 423


>ref|XP_004137382.1| PREDICTED: glutamate decarboxylase-like [Cucumis sativus]
          Length = 496

 Score =  100 bits (250), Expect = 9e-20
 Identities = 49/86 (56%), Positives = 57/86 (66%)
 Frame = -3

Query: 262 GYKNVMHNCMENARQLREGLEKTGHFEIVSKVKGIPXXXXXXXXXXXXXXXXXXXXLRHY 83
           GYKNVM NC ENAR LREG+EK G FE+VSK  G+P                    LR +
Sbjct: 338 GYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRF 397

Query: 82  GWIVPAYTMPANAQHVIILRVVVRED 5
           GWIVPAYTMPA+AQH+ +LRVV+RED
Sbjct: 398 GWIVPAYTMPADAQHIAVLRVVIRED 423


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